Wall clock time and date at job start Thu Apr 9 2020 13:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00448 * 2 1 4 4 H 1.48500 * 109.46831 * 269.99923 * 3 2 1 5 5 H 1.48507 * 109.46949 * 29.99669 * 3 2 1 6 6 H 1.48497 * 109.47366 * 149.99819 * 3 2 1 7 7 C 1.37880 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00023 * 183.05623 * 7 2 1 9 9 C 1.50700 * 120.00219 * 3.06387 * 7 2 1 10 10 C 1.53003 * 115.54875 * 84.67812 * 9 7 2 11 11 N 1.46504 * 109.46574 * 53.73040 * 10 9 7 12 12 C 1.29529 * 119.99977 * 129.70486 * 11 10 9 13 13 C 1.47213 * 119.99949 * 18.53322 * 12 11 10 14 14 C 1.39861 * 120.11943 * 27.54551 * 13 12 11 15 15 C 1.37669 * 120.02778 * 179.97438 * 14 13 12 16 16 C 1.39013 * 120.27801 * 359.97438 * 15 14 13 17 17 O 1.35855 * 119.88029 * 180.02562 * 16 15 14 18 18 C 1.39020 * 120.23829 * 0.02562 * 16 15 14 19 19 O 1.36110 * 120.01606 * 180.02562 * 18 16 15 20 20 C 1.38781 * 119.97301 * 359.69999 * 18 16 15 21 21 O 1.35814 * 120.14334 * 180.31785 * 20 18 16 22 22 C 1.52998 * 117.49991 * 230.35336 * 9 7 2 23 23 C 1.52995 * 117.49497 * 299.01502 * 9 7 2 24 24 H 0.97002 * 119.99502 * 0.02562 * 1 2 3 25 25 H 1.08989 * 109.47538 * 293.72841 * 10 9 7 26 26 H 1.09004 * 109.46513 * 173.71986 * 10 9 7 27 27 H 1.08002 * 119.99933 * 198.53724 * 12 11 10 28 28 H 1.08006 * 119.99050 * 359.97438 * 14 13 12 29 29 H 1.08005 * 119.86427 * 180.02562 * 15 14 13 30 30 H 0.96696 * 114.00002 * 90.00546 * 17 16 15 31 31 H 0.96695 * 113.99769 * 90.00289 * 19 18 16 32 32 H 0.96698 * 113.99757 * 275.12422 * 21 20 18 33 33 H 1.08993 * 117.50072 * 214.99708 * 22 9 7 34 34 H 1.09007 * 117.49673 * 0.02592 * 22 9 7 35 35 H 1.08999 * 117.50221 * 359.97350 * 23 9 7 36 36 H 1.09009 * 117.49962 * 144.97256 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0833 -1.1948 0.0504 9 6 1.2526 -2.4983 -0.0686 10 6 0.8762 -2.9692 -1.4749 11 7 2.0763 -3.0079 -2.3143 12 6 2.3515 -4.0704 -3.0021 13 6 1.2995 -5.0632 -3.2756 14 6 -0.0407 -4.6675 -3.3346 15 6 -1.0230 -5.5974 -3.5910 16 6 -0.6894 -6.9318 -3.7928 17 8 -1.6652 -7.8425 -4.0458 18 6 0.6391 -7.3375 -3.7367 19 8 0.9606 -8.6451 -3.9355 20 6 1.6380 -6.4077 -3.4846 21 8 2.9375 -6.7992 -3.4354 22 6 1.6011 -3.5704 0.9658 23 6 0.2756 -2.8114 1.0663 24 1 -0.4849 0.8401 -0.0004 25 1 0.1522 -2.2789 -1.9076 26 1 0.4394 -3.9663 -1.4193 27 1 3.3528 -4.2281 -3.3750 28 1 -0.3052 -3.6320 -3.1790 29 1 -2.0570 -5.2889 -3.6364 30 1 -1.8647 -7.9545 -4.9853 31 1 1.1366 -8.8707 -4.8592 32 1 3.2141 -7.1372 -2.5727 33 1 1.5622 -4.6112 0.6445 34 1 2.3740 -3.3322 1.6966 35 1 0.1769 -2.0743 1.8633 36 1 -0.6356 -3.3527 0.8112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797398691.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:56 Heat of formation + Delta-G solvation = -43.147882 kcal Electronic energy + Delta-G solvation = -21226.260474 eV Core-core repulsion = 17870.938006 eV Total energy + Delta-G solvation = -3355.322469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.59419 -38.13436 -37.61807 -36.66128 -35.93184 -34.30359 -31.84978 -29.66494 -29.04431 -26.97382 -25.28986 -23.09179 -22.74781 -21.09858 -20.14410 -19.41888 -18.69921 -18.11604 -17.42488 -16.68541 -16.12441 -15.52463 -15.24748 -14.83280 -14.62857 -14.15968 -14.06274 -13.69476 -13.16919 -13.04008 -12.68156 -12.35530 -12.02749 -11.66496 -11.50134 -11.05567 -10.93438 -10.87138 -10.46434 -10.31443 -10.20824 -9.97160 -9.51122 -8.99390 -8.78388 -8.52390 -8.41395 -8.14223 -7.92447 -5.97695 -3.99651 0.73926 1.01240 2.63171 3.34604 3.40576 3.44512 3.47693 3.72941 3.95630 4.32767 4.46796 4.83264 4.92918 5.05369 5.16535 5.33129 5.44163 5.54949 5.58439 5.96479 5.98996 6.02766 6.19167 6.24627 6.37625 6.44026 6.54677 6.68666 6.77240 6.97467 7.09793 7.17767 7.39654 7.43943 7.54657 7.67840 7.95253 8.40292 8.58244 8.99474 9.63548 11.11742 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026997 B = 0.004496 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.895839 B = 6225.738734 C = 6472.137573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.467 4.467 8 H 0.059 0.941 9 C 0.053 3.947 10 C 0.069 3.931 11 N -0.442 5.442 12 C 0.130 3.870 13 C -0.112 4.112 14 C -0.078 4.078 15 C -0.140 4.140 16 C 0.096 3.904 17 O -0.486 6.486 18 C 0.044 3.956 19 O -0.482 6.482 20 C 0.118 3.882 21 O -0.486 6.486 22 C -0.214 4.214 23 C -0.149 4.149 24 H 0.258 0.742 25 H 0.084 0.916 26 H 0.033 0.967 27 H 0.157 0.843 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.386 0.614 31 H 0.385 0.615 32 H 0.396 0.604 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -14.191 -10.161 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.505 4.505 8 H 0.078 0.922 9 C 0.052 3.948 10 C -0.060 4.060 11 N -0.146 5.146 12 C -0.081 4.081 13 C -0.115 4.115 14 C -0.098 4.098 15 C -0.159 4.159 16 C 0.049 3.951 17 O -0.296 6.296 18 C -0.002 4.002 19 O -0.291 6.291 20 C 0.070 3.930 21 O -0.296 6.296 22 C -0.251 4.251 23 C -0.187 4.187 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.051 0.949 27 H 0.174 0.826 28 H 0.160 0.840 29 H 0.155 0.845 30 H 0.242 0.758 31 H 0.240 0.760 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.800 -13.014 -9.216 15.967 hybrid contribution -0.223 0.052 -0.678 0.716 sum -1.023 -12.962 -9.894 16.339 Atomic orbital electron populations 1.70002 1.05811 1.26246 1.50572 1.24953 0.94825 0.98853 0.94916 0.86606 0.79879 0.83474 0.78087 1.20688 1.21490 1.19923 1.20306 0.92471 0.88221 1.49488 0.92234 1.18699 0.98121 0.93385 0.84583 1.22397 0.90771 0.97672 0.95134 1.72122 1.23021 1.17867 1.01628 1.24679 0.96814 0.87553 0.99074 1.20577 0.95357 0.94136 1.01427 1.21488 0.91088 1.00871 0.96303 1.21299 1.00645 0.91364 1.02542 1.18706 0.86523 0.88196 1.01633 1.84879 1.54669 1.59988 1.30067 1.19059 0.90815 0.84189 1.06157 1.84900 1.90874 1.21555 1.31775 1.18725 0.83500 0.90304 1.00513 1.84663 1.22462 1.84399 1.38088 1.23028 1.00209 0.95432 1.06426 1.22521 0.90825 1.01451 1.03901 0.93256 0.89768 0.94938 0.82589 0.83951 0.84500 0.75828 0.76031 0.74702 0.92271 0.90398 0.89525 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 12.70 55.43 0.70 -24.42 16 2 C 0.07 1.83 5.43 -17.82 -0.10 1.73 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.47 -12.88 8.50 -34.44 -0.29 -13.17 16 8 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 9 C 0.05 1.31 1.71 -155.66 -0.27 1.05 16 10 C 0.07 1.52 4.34 -4.04 -0.02 1.50 16 11 N -0.44 -9.23 10.24 -59.12 -0.61 -9.83 16 12 C 0.13 2.17 10.67 -14.88 -0.16 2.01 16 13 C -0.11 -1.67 5.20 -104.90 -0.55 -2.22 16 14 C -0.08 -1.15 7.52 -39.18 -0.29 -1.44 16 15 C -0.14 -1.80 9.96 -39.50 -0.39 -2.19 16 16 C 0.10 1.19 6.72 -39.00 -0.26 0.93 16 17 O -0.49 -5.28 13.26 -34.14 -0.45 -5.73 16 18 C 0.04 0.55 6.72 -39.09 -0.26 0.29 16 19 O -0.48 -5.40 13.06 -45.52 -0.59 -5.99 16 20 C 0.12 1.57 6.73 -38.64 -0.26 1.31 16 21 O -0.49 -5.69 12.63 -33.87 -0.43 -6.12 16 22 C -0.21 -4.79 9.92 -26.69 -0.26 -5.06 16 23 C -0.15 -3.54 9.23 -26.69 -0.25 -3.79 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.08 2.01 7.45 -51.94 -0.39 1.62 16 26 H 0.03 0.66 5.23 -51.93 -0.27 0.39 16 27 H 0.16 2.25 7.91 -52.49 -0.42 1.84 16 28 H 0.14 2.27 5.65 -52.48 -0.30 1.98 16 29 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.39 2.07 9.06 45.56 0.41 2.49 16 31 H 0.38 2.47 9.07 45.56 0.41 2.89 16 32 H 0.40 3.37 9.06 45.56 0.41 3.78 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 36 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -33.32 315.57 -6.79 -40.11 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -1.79 Total: 9.71 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -3.36 Total: -19.05 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.10 Total: -34.25 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -1.47 Total: -17.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.32 -6.79 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797398691.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.040 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds