Wall clock time and date at job start Thu Apr 9 2020 13:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33574 * 125.83809 * 2 1 4 4 C 1.34845 * 109.91477 * 180.15104 * 3 2 1 5 5 C 1.43205 * 125.64118 * 179.88218 * 4 3 2 6 6 N 4.69715 * 150.55222 * 359.76343 * 2 1 3 7 7 C 1.36050 * 108.71292 * 359.61677 * 4 3 2 8 8 C 1.37816 * 125.82886 * 179.73120 * 2 1 3 9 9 C 1.47336 * 126.78755 * 359.96338 * 8 2 1 10 10 O 1.21521 * 120.00140 * 0.02562 * 9 8 2 11 11 O 1.34764 * 119.99806 * 180.02562 * 9 8 2 12 12 C 1.45196 * 116.99853 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47205 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46809 * 300.00244 * 13 12 11 15 15 C 1.52997 * 109.46795 * 59.99738 * 13 12 11 16 16 C 1.50700 * 109.46970 * 180.02562 * 13 12 11 17 17 H 1.07991 * 120.00373 * 359.97438 * 16 13 12 18 18 C 1.37879 * 119.99638 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00199 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00059 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.46981 * 59.99696 * 20 18 16 22 22 H 1.48492 * 109.47183 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46875 * 300.00405 * 20 18 16 24 24 H 1.08997 * 109.47207 * 270.26878 * 1 2 3 25 25 H 1.09001 * 109.46885 * 30.27094 * 1 2 3 26 26 H 1.09000 * 109.47425 * 150.26816 * 1 2 3 27 27 H 1.07999 * 126.69516 * 180.20875 * 7 4 3 28 28 H 1.09006 * 109.47549 * 299.99964 * 12 11 9 29 29 H 1.09001 * 109.47195 * 60.00004 * 12 11 9 30 30 H 1.08998 * 109.47689 * 59.99814 * 14 13 12 31 31 H 1.09003 * 109.47202 * 180.02562 * 14 13 12 32 32 H 1.09001 * 109.47047 * 299.99661 * 14 13 12 33 33 H 1.09006 * 109.46886 * 60.00691 * 15 13 12 34 34 H 1.09001 * 109.46738 * 179.97438 * 15 13 12 35 35 H 1.08998 * 109.47721 * 300.00191 * 15 13 12 36 36 H 0.96997 * 120.00650 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2891 1.0829 0.0000 4 6 3.5858 0.7129 -0.0033 5 6 4.7075 1.6031 -0.0068 6 7 5.5973 2.3092 -0.0095 7 6 3.6520 -0.6460 0.0030 8 6 2.3138 -1.1174 0.0052 9 6 1.8736 -2.5234 0.0126 10 8 0.6877 -2.7889 0.0141 11 8 2.7861 -3.5151 0.0177 12 6 2.2804 -4.8761 0.0254 13 6 3.4549 -5.8566 0.0296 14 6 4.3076 -5.6364 -1.2215 15 6 4.3096 -5.6230 1.2769 16 6 2.9300 -7.2692 0.0370 17 1 1.8652 -7.4496 0.0389 18 6 3.8092 -8.3313 0.0423 19 7 5.1058 -8.1116 0.0405 20 14 3.1586 -10.0823 0.0522 21 1 2.3294 -10.3091 -1.1587 22 1 4.2986 -11.0339 0.0562 23 1 2.3306 -10.2958 1.2662 24 1 -0.3633 0.0048 1.0276 25 1 -0.3633 0.8876 -0.5180 26 1 -0.3634 -0.8924 -0.5097 27 1 4.5484 -1.2484 0.0056 28 1 1.6725 -5.0329 0.9165 29 1 1.6718 -5.0426 -0.8635 30 1 4.6872 -4.6147 -1.2273 31 1 5.1441 -6.3352 -1.2188 32 1 3.6986 -5.8028 -2.1101 33 1 3.7021 -5.7799 2.1683 34 1 5.1462 -6.3218 1.2801 35 1 4.6893 -4.6013 1.2711 36 1 5.7244 -8.8587 0.0447 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797959465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:59 Heat of formation + Delta-G solvation = -60.487734 kcal Electronic energy + Delta-G solvation = -20872.114404 eV Core-core repulsion = 17516.040023 eV Total energy + Delta-G solvation = -3356.074381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.09252 -41.15382 -38.26215 -37.87848 -36.55707 -34.69672 -33.24669 -33.16197 -29.06539 -27.58025 -27.52355 -27.09922 -24.96616 -23.22442 -22.12235 -20.69229 -20.25608 -18.37061 -17.94521 -17.72171 -17.08665 -17.03148 -16.59390 -16.41314 -15.13386 -14.85547 -14.82381 -14.76331 -14.60690 -14.46591 -14.14589 -13.80471 -13.72430 -13.56470 -13.27694 -13.08257 -12.91254 -12.78366 -12.62279 -12.28941 -12.10936 -11.67184 -11.64807 -11.34008 -11.19397 -11.16054 -10.69875 -10.36361 -9.76207 -8.01043 -6.18989 -0.27464 0.22350 0.68462 1.47375 1.47736 1.54357 1.66524 1.77502 1.85805 2.14251 2.48004 2.80658 3.22696 3.44667 3.58457 3.92766 4.24703 4.32761 4.34848 4.45978 4.61361 4.65651 4.68890 4.90116 4.93090 5.10376 5.15911 5.24113 5.27724 5.40752 5.55861 5.63781 5.68350 5.70033 6.09606 6.12735 6.22463 6.40929 6.76852 6.87358 7.49101 8.98058 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.003906 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.998180 B = 7166.815792 C = 7993.451130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.146 3.854 3 O -0.138 6.138 4 C 0.022 3.978 5 C 0.316 3.684 6 N -0.410 5.410 7 C -0.054 4.054 8 C -0.250 4.250 9 C 0.531 3.469 10 O -0.531 6.531 11 O -0.346 6.346 12 C 0.099 3.901 13 C 0.060 3.940 14 C -0.119 4.119 15 C -0.119 4.119 16 C -0.534 4.534 17 H 0.052 0.948 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.950 3.050 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.186 0.814 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 15.959 -0.048 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.089 3.911 3 O -0.031 6.031 4 C -0.029 4.029 5 C 0.001 3.999 6 N -0.088 5.088 7 C -0.077 4.077 8 C -0.253 4.253 9 C 0.378 3.622 10 O -0.424 6.424 11 O -0.262 6.262 12 C 0.026 3.974 13 C 0.060 3.940 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.572 4.572 17 H 0.070 0.930 18 C -0.172 4.172 19 N -0.538 5.538 20 Si 0.776 3.224 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.122 0.878 27 H 0.204 0.796 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.795 17.132 -0.053 18.086 hybrid contribution -0.442 -1.698 0.013 1.755 sum -6.237 15.434 -0.039 16.647 Atomic orbital electron populations 1.21000 0.80279 1.06759 1.06562 1.23936 0.95106 0.81269 0.90758 1.83972 1.14884 1.34008 1.70277 1.15886 0.79511 0.89251 1.18260 1.23313 0.91591 0.91989 0.92989 1.81373 1.10421 1.06668 1.10326 1.22187 0.98464 0.91901 0.95135 1.19382 0.94479 0.90669 1.20730 1.20221 0.83815 0.85906 0.72252 1.90779 1.18424 1.85189 1.47971 1.86555 1.39525 1.17108 1.82996 1.23284 0.98019 0.75745 1.00338 1.18269 0.90861 0.90955 0.93913 1.21624 1.00631 0.98809 0.96615 1.21624 1.00633 0.98796 0.96631 1.21197 0.92904 0.90983 1.52072 0.92998 1.25490 0.95063 1.02132 0.94474 1.69934 1.01825 1.31840 1.50158 0.85742 0.77816 0.80202 0.78621 1.19980 1.20998 1.19969 0.86539 0.86477 0.87829 0.79650 0.92757 0.92764 0.94730 0.92087 0.96093 0.96092 0.92084 0.94724 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 9.89 71.24 0.70 -0.38 16 2 C 0.15 2.60 7.41 25.59 0.19 2.79 16 3 O -0.14 -2.38 10.61 -1.07 -0.01 -2.40 16 4 C 0.02 0.40 7.03 23.01 0.16 0.56 16 5 C 0.32 6.47 15.87 88.33 1.40 7.87 16 6 N -0.41 -9.92 18.54 19.00 0.35 -9.57 16 7 C -0.05 -1.11 10.67 22.66 0.24 -0.87 16 8 C -0.25 -5.89 6.16 -20.08 -0.12 -6.01 16 9 C 0.53 16.66 7.96 70.22 0.56 17.22 16 10 O -0.53 -18.02 14.62 19.77 0.29 -17.73 16 11 O -0.35 -12.55 8.75 -56.75 -0.50 -13.04 16 12 C 0.10 4.12 4.27 71.98 0.31 4.43 16 13 C 0.06 2.84 0.58 -52.93 -0.03 2.81 16 14 C -0.12 -5.51 8.11 71.98 0.58 -4.92 16 15 C -0.12 -5.51 8.11 71.98 0.58 -4.93 16 16 C -0.53 -27.75 8.01 25.60 0.21 -27.54 16 17 H 0.05 2.68 7.74 -2.92 -0.02 2.65 16 18 C 0.03 1.48 5.15 84.66 0.44 1.92 16 19 N -0.90 -48.14 9.35 21.45 0.20 -47.94 16 20 Si 0.95 41.71 29.54 68.60 2.03 43.74 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 1.65 6.48 -2.39 -0.02 1.63 16 27 H 0.19 3.50 8.06 -2.91 -0.02 3.47 16 28 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.03 1.43 7.68 -2.39 -0.02 1.41 16 31 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 35 H 0.03 1.43 7.68 -2.39 -0.02 1.41 16 36 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -59.06 318.88 8.69 -50.37 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.11 Total: 3.63 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 5.22 Total: -7.06 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.55 Total: -57.51 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.22 Total: -33.17 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -59.06 8.69 -50.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797959465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.116 kcal (2) G-P(sol) polarization free energy of solvation -59.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds