Wall clock time and date at job start Thu Apr 9 2020 13:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46836 * 103.99631 * 3 2 1 5 5 C 1.36858 * 120.00083 * 48.92018 * 4 3 2 6 6 H 1.08000 * 120.00192 * 312.21277 * 5 4 3 7 7 C 1.39061 * 119.99971 * 132.49992 * 5 4 3 8 8 N 1.31357 * 119.99962 * 4.67926 * 7 5 4 9 9 Si 1.86797 * 119.99903 * 184.68629 * 7 5 4 10 10 H 1.48496 * 109.47233 * 59.99705 * 9 7 5 11 11 H 1.48497 * 109.47074 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47240 * 299.99541 * 9 7 5 13 13 C 1.34776 * 119.99711 * 228.92113 * 4 3 2 14 14 O 1.21609 * 119.99844 * 173.13191 * 13 4 3 15 15 C 1.47574 * 120.00112 * 353.12968 * 13 4 3 16 16 C 1.34904 * 125.45761 * 229.26192 * 15 13 4 17 17 C 1.50700 * 126.64365 * 0.02562 * 16 15 13 18 18 C 1.51085 * 106.71706 * 179.90203 * 16 15 13 19 19 C 1.52992 * 110.28251 * 241.07059 * 18 16 15 20 20 C 1.53006 * 109.97629 * 119.47951 * 18 16 15 21 21 O 1.45442 * 106.23487 * 0.36122 * 18 16 15 22 22 C 1.34475 * 108.00746 * 359.78191 * 21 18 16 23 23 O 1.21482 * 125.02222 * 180.02562 * 22 21 18 24 24 H 4.40640 * 5.51356 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47669 * 343.99490 * 3 2 1 26 26 H 1.09000 * 109.46707 * 223.99211 * 3 2 1 27 27 H 0.96998 * 119.99662 * 184.99971 * 8 7 5 28 28 H 1.09001 * 109.47086 * 0.02803 * 17 16 15 29 29 H 1.08997 * 109.47094 * 120.02504 * 17 16 15 30 30 H 1.08998 * 109.47647 * 240.02865 * 17 16 15 31 31 H 1.08995 * 109.47440 * 178.37081 * 19 18 16 32 32 H 1.09008 * 109.46846 * 298.36585 * 19 18 16 33 33 H 1.09002 * 109.47381 * 58.36097 * 19 18 16 34 34 H 1.09001 * 109.47354 * 301.82267 * 20 18 16 35 35 H 1.09006 * 109.46642 * 61.81466 * 20 18 16 36 36 H 1.08992 * 109.47192 * 181.81524 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3349 -1.3402 5 6 2.6275 1.4204 -2.0021 6 1 1.5593 1.5711 -2.0538 7 6 3.4878 2.3262 -2.6130 8 7 4.7802 2.0924 -2.6345 9 14 2.8055 3.8753 -3.4030 10 1 2.1015 4.6854 -2.3768 11 1 3.9202 4.6687 -3.9803 12 1 1.8526 3.5035 -4.4796 13 6 4.0822 -0.4265 -1.9215 14 8 4.3981 -0.2262 -3.0786 15 6 4.7370 -1.5034 -1.1537 16 6 6.0681 -1.7044 -1.0665 17 6 7.1467 -0.8831 -1.7247 18 6 6.2684 -2.9104 -0.1788 19 6 7.0734 -2.5261 1.0642 20 6 6.9915 -4.0147 -0.9525 21 8 4.9389 -3.3578 0.2053 22 6 4.0420 -2.5341 -0.3652 23 8 2.8365 -2.6266 -0.2472 24 1 -1.0500 0.0001 0.0002 25 1 3.0099 -0.9870 0.2833 26 1 3.0090 0.7402 0.7138 27 1 5.3873 2.7571 -2.9957 28 1 6.6901 -0.0774 -2.2996 29 1 7.7985 -0.4599 -0.9605 30 1 7.7317 -1.5179 -2.3903 31 1 7.1852 -3.3981 1.7085 32 1 8.0581 -2.1683 0.7630 33 1 6.5508 -1.7381 1.6064 34 1 6.4109 -4.2791 -1.8363 35 1 7.9760 -3.6596 -1.2575 36 1 7.1030 -4.8917 -0.3151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798799252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:01 Heat of formation + Delta-G solvation = -25.505595 kcal Electronic energy + Delta-G solvation = -22395.986782 eV Core-core repulsion = 19041.429340 eV Total energy + Delta-G solvation = -3354.557442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.90542 -40.09147 -39.14058 -36.58588 -35.66832 -34.35163 -33.28421 -32.81529 -29.68266 -28.39465 -28.24353 -26.72788 -24.44592 -23.65661 -21.23284 -20.68073 -19.57179 -18.42426 -17.97173 -17.63095 -17.40094 -16.89705 -16.24977 -15.93636 -15.58450 -15.43575 -15.02820 -14.50332 -14.35419 -14.26262 -13.99379 -13.68690 -13.39741 -13.26199 -13.17756 -12.99133 -12.94318 -12.73666 -12.63145 -12.28918 -12.13835 -11.88508 -11.51480 -11.36376 -10.98284 -10.75640 -10.44494 -10.13630 -9.21024 -8.18593 -6.09778 -0.35157 1.37263 1.39362 1.44334 1.49233 1.78967 1.88706 2.01297 2.25608 2.44854 2.71510 3.02639 3.17744 3.34634 3.66021 3.69715 3.79145 4.06380 4.30468 4.49678 4.52816 4.62759 4.70664 4.71024 4.72344 4.77799 4.78795 4.97521 5.13037 5.15408 5.24016 5.40723 5.48204 5.54308 6.17105 6.21892 6.78463 6.97012 7.06479 7.55831 8.25260 8.86212 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.007474 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.657191 B = 3745.298022 C = 4806.514647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.205 4.205 3 C 0.183 3.817 4 N -0.457 5.457 5 C -0.356 4.356 6 H 0.068 0.932 7 C 0.007 3.993 8 N -0.851 5.851 9 Si 0.983 3.017 10 H -0.263 1.263 11 H -0.275 1.275 12 H -0.279 1.279 13 C 0.535 3.465 14 O -0.555 6.555 15 C -0.295 4.295 16 C 0.008 3.992 17 C -0.110 4.110 18 C 0.108 3.892 19 C -0.143 4.143 20 C -0.144 4.144 21 O -0.316 6.316 22 C 0.511 3.489 23 O -0.481 6.481 24 H 0.255 0.745 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.263 0.737 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.119 0.881 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 -8.417 7.870 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.206 4.206 3 C 0.061 3.939 4 N -0.178 5.178 5 C -0.484 4.484 6 H 0.086 0.914 7 C -0.200 4.200 8 N -0.485 5.485 9 Si 0.807 3.193 10 H -0.187 1.187 11 H -0.200 1.200 12 H -0.205 1.205 13 C 0.324 3.676 14 O -0.434 6.434 15 C -0.300 4.300 16 C 0.005 3.995 17 C -0.165 4.165 18 C 0.071 3.929 19 C -0.200 4.200 20 C -0.201 4.201 21 O -0.232 6.232 22 C 0.357 3.643 23 O -0.371 6.371 24 H 0.271 0.729 25 H 0.129 0.871 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.138 0.862 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.506 -8.509 7.366 14.732 hybrid contribution -1.063 1.012 -0.576 1.577 sum 8.444 -7.497 6.789 13.176 Atomic orbital electron populations 1.25587 0.96514 1.01502 0.98882 1.23666 0.95433 1.00066 1.01445 1.19137 0.85576 1.02312 0.86885 1.43276 1.36665 1.24763 1.13143 1.19216 0.92055 1.01775 1.35352 0.91446 1.26267 0.95453 1.00906 0.97331 1.70060 1.03006 1.33184 1.42279 0.85192 0.77816 0.77914 0.78406 1.18749 1.20002 1.20491 1.17443 0.83376 0.80908 0.85883 1.90562 1.65101 1.69856 1.17930 1.22618 0.97180 1.02339 1.07900 1.24449 0.94059 0.92298 0.88659 1.20817 0.95209 0.99118 1.01369 1.22602 0.80537 0.92814 0.96904 1.22115 1.00353 1.03822 0.93720 1.22120 1.01281 0.96894 0.99768 1.87352 1.18648 1.51011 1.66238 1.20943 0.86381 0.80344 0.76643 1.90836 1.12675 1.72280 1.61304 0.72929 0.87082 0.91511 0.92770 0.92205 0.86531 0.86488 0.88102 0.86275 0.92476 0.92869 0.86218 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.26 19.25 74.32 1.43 -6.83 16 2 C -0.21 -9.71 12.33 31.13 0.38 -9.33 16 3 C 0.18 9.03 5.73 84.57 0.48 9.51 16 4 N -0.46 -26.00 2.78 -648.99 -1.80 -27.81 16 5 C -0.36 -21.40 8.57 84.11 0.72 -20.67 16 6 H 0.07 4.07 7.33 -2.91 -0.02 4.05 16 7 C 0.01 0.40 5.05 84.96 0.43 0.83 16 8 N -0.85 -49.97 10.74 21.68 0.23 -49.74 16 9 Si 0.98 45.60 29.56 68.60 2.03 47.63 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 C 0.54 29.89 6.08 86.71 0.53 30.41 16 14 O -0.55 -34.69 13.71 -4.06 -0.06 -34.75 16 15 C -0.30 -12.91 5.33 -19.22 -0.10 -13.02 16 16 C 0.01 0.25 5.13 -17.09 -0.09 0.16 16 17 C -0.11 -3.08 10.29 71.24 0.73 -2.34 16 18 C 0.11 2.53 1.38 -11.42 -0.02 2.52 16 19 C -0.14 -2.20 8.94 71.98 0.64 -1.56 16 20 C -0.14 -2.28 8.91 71.98 0.64 -1.64 16 21 O -0.32 -10.22 10.58 -54.19 -0.57 -10.79 16 22 C 0.51 21.26 7.23 70.18 0.51 21.76 16 23 O -0.48 -22.94 15.20 19.57 0.30 -22.65 16 24 H 0.25 7.15 7.80 -4.42 -0.03 7.11 16 25 H 0.11 5.28 2.77 -21.54 -0.06 5.22 16 26 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.06 2.44 6.69 -2.39 -0.02 2.43 16 29 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -83.41 314.29 7.47 -75.94 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.04 Total: 12.35 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.30 Total: 9.82 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -1.57 Total: -77.54 kcal Atomic # 8 Polarization: -67.86 SS G_CDS: -0.33 Total: -68.19 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -83.41 7.47 -75.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798799252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.437 kcal (2) G-P(sol) polarization free energy of solvation -83.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds