Wall clock time and date at job start Thu Apr 9 2020 13:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99992 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46693 * 120.00362 * 3 2 1 6 6 H 1.48502 * 109.46931 * 240.00214 * 3 2 1 7 7 C 1.37875 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00188 * 187.12085 * 7 2 1 9 9 C 1.50695 * 120.00268 * 7.12364 * 7 2 1 10 10 C 1.53002 * 115.54910 * 275.21782 * 9 7 2 11 11 O 1.45201 * 109.46574 * 301.70265 * 10 9 7 12 12 C 1.34888 * 117.00107 * 184.74709 * 11 10 9 13 13 O 1.21618 * 119.99366 * 0.02562 * 12 11 10 14 14 C 1.46537 * 120.00243 * 179.97438 * 12 11 10 15 15 O 1.35357 * 126.65051 * 359.69345 * 14 12 11 16 16 C 1.33658 * 107.67854 * 179.83756 * 15 14 12 17 17 N 1.30638 * 109.17251 * 0.42995 * 16 15 14 18 18 C 1.33657 * 109.00623 * 359.73300 * 17 16 15 19 19 C 1.50700 * 126.27568 * 180.02562 * 18 17 16 20 20 C 1.52999 * 117.50137 * 8.74403 * 19 18 17 21 21 C 1.52999 * 117.49802 * 300.08084 * 19 18 17 22 22 C 1.52999 * 117.50478 * 129.54110 * 9 7 2 23 23 C 1.53005 * 117.49888 * 60.87863 * 9 7 2 24 24 H 0.96996 * 120.00187 * 175.39082 * 1 2 3 25 25 H 1.08995 * 109.47330 * 61.69951 * 10 9 7 26 26 H 1.09003 * 109.46933 * 181.70696 * 10 9 7 27 27 H 1.08004 * 125.41263 * 180.18322 * 16 15 14 28 28 H 1.08999 * 115.54708 * 154.41537 * 19 18 17 29 29 H 1.09001 * 117.49486 * 0.02562 * 20 19 18 30 30 H 1.08999 * 117.50006 * 145.01894 * 20 19 18 31 31 H 1.08990 * 117.50134 * 214.97779 * 21 19 18 32 32 H 1.08998 * 117.49784 * 359.97438 * 21 19 18 33 33 H 1.09000 * 117.49290 * 359.97438 * 22 9 7 34 34 H 1.08992 * 117.50412 * 145.02048 * 22 9 7 35 35 H 1.09000 * 117.49814 * 214.98081 * 23 9 7 36 36 H 1.08996 * 117.49568 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0782 -1.1977 0.1154 9 6 1.2598 -2.4940 -0.1630 10 6 0.6777 -3.0861 1.1222 11 8 1.7462 -3.3073 2.0802 12 6 1.4155 -3.9194 3.2359 13 8 0.2651 -4.2591 3.4364 14 6 2.4425 -4.1760 4.2491 15 8 3.7568 -3.8635 4.1646 16 6 4.3427 -4.2633 5.2975 17 7 3.4474 -4.8165 6.0714 18 6 2.2604 -4.7815 5.4581 19 6 0.9595 -5.3129 6.0025 20 6 0.9385 -5.7691 7.4627 21 6 0.8900 -6.8044 6.3362 22 6 1.7683 -3.4718 -1.2241 23 6 0.4682 -2.6979 -1.4563 24 1 -0.4850 -0.8373 -0.0675 25 1 -0.0507 -2.3936 1.5439 26 1 0.1897 -4.0343 0.8968 27 1 5.3906 -4.1507 5.5336 28 1 0.0583 -4.8426 5.6091 29 1 1.8655 -5.6846 8.0298 30 1 0.0233 -5.5994 8.0299 31 1 -0.0570 -7.3153 6.1628 32 1 1.7850 -7.4014 6.1615 33 1 2.6413 -3.1746 -1.8051 34 1 1.6880 -4.5369 -1.0069 35 1 -0.4669 -3.2542 -1.3917 36 1 0.4857 -1.8916 -2.1895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808987757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:06 Heat of formation + Delta-G solvation = -11.730392 kcal Electronic energy + Delta-G solvation = -21168.588574 eV Core-core repulsion = 17814.628470 eV Total energy + Delta-G solvation = -3353.960104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.54270 -39.80561 -37.62649 -37.06319 -35.52909 -34.48681 -31.94684 -30.79908 -27.27976 -25.00808 -24.45841 -23.76741 -22.46698 -21.51650 -21.15955 -20.38765 -19.60204 -18.01624 -17.14140 -16.94089 -16.86300 -16.02138 -15.52146 -15.38874 -14.79079 -14.20843 -13.76131 -13.75239 -13.25516 -12.71342 -12.43053 -12.16088 -11.99822 -11.96464 -11.60441 -11.08163 -11.03042 -10.84287 -10.75954 -10.57872 -10.56422 -10.24058 -10.15923 -10.11095 -9.68775 -8.95403 -8.62228 -8.54166 -8.39545 -6.40655 -4.14012 0.66426 2.23052 2.30373 2.92789 3.20260 3.41954 3.42841 3.62010 3.75096 3.88047 4.32144 4.47860 4.73524 4.87468 4.93999 5.12616 5.19315 5.26123 5.44560 5.46512 5.54240 5.68528 5.71093 5.97130 6.00897 6.02335 6.03152 6.12553 6.20728 6.32237 6.49320 6.73271 6.80628 7.08997 7.15502 7.38163 8.02006 8.17789 8.39200 8.81091 9.59413 10.98382 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021293 B = 0.004722 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.693719 B = 5928.250983 C = 6382.217269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.026 3.974 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.564 4.564 8 H 0.056 0.944 9 C 0.012 3.988 10 C 0.111 3.889 11 O -0.316 6.316 12 C 0.547 3.453 13 O -0.492 6.492 14 C -0.077 4.077 15 O -0.170 6.170 16 C 0.205 3.795 17 N -0.494 5.494 18 C 0.112 3.888 19 C -0.094 4.094 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.190 4.190 23 C -0.166 4.166 24 H 0.272 0.728 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.259 0.741 28 H 0.140 0.860 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.021 -10.382 10.478 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.896 3.104 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.602 4.602 8 H 0.075 0.925 9 C 0.011 3.989 10 C 0.038 3.962 11 O -0.230 6.230 12 C 0.390 3.610 13 O -0.384 6.384 14 C -0.131 4.131 15 O -0.054 6.054 16 C -0.020 4.020 17 N -0.223 5.223 18 C -0.011 4.011 19 C -0.113 4.113 20 C -0.197 4.197 21 C -0.195 4.195 22 C -0.227 4.227 23 C -0.204 4.204 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.274 0.726 28 H 0.157 0.843 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.644 -9.008 11.059 15.000 hybrid contribution 0.195 -1.370 -0.760 1.579 sum 4.838 -10.378 10.298 15.400 Atomic orbital electron populations 1.70773 1.06777 1.31320 1.45079 1.25838 0.96513 1.02421 0.93191 0.83556 0.74952 0.75250 0.76654 1.20749 1.21402 1.21304 1.21197 0.94549 0.89226 1.55200 0.92541 1.19061 0.99494 0.95976 0.84323 1.23045 0.86803 0.98220 0.88138 1.86733 1.42377 1.68579 1.25295 1.19014 0.84984 0.75625 0.81355 1.90869 1.18626 1.50265 1.78605 1.21727 0.82126 1.10778 0.98439 1.84649 1.19758 1.61948 1.39036 1.28371 1.00690 0.93393 0.79561 1.70255 0.99356 1.20779 1.31915 1.20995 0.93861 0.96742 0.89515 1.20569 0.93054 0.98304 0.99334 1.23001 1.03912 1.02525 0.90267 1.22971 1.03561 0.90417 1.02563 1.22924 0.97860 0.95567 1.06363 1.22799 0.93493 1.02300 1.01772 0.91681 0.91025 0.93501 0.72559 0.84256 0.87733 0.88196 0.87938 0.88668 0.89660 0.91271 0.91147 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.57 55.43 0.75 -25.60 16 2 C 0.03 0.72 5.39 -17.82 -0.10 0.62 16 3 Si 1.07 24.79 29.91 -169.99 -5.08 19.71 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.56 -15.56 8.64 -34.44 -0.30 -15.85 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.01 0.30 1.20 -155.66 -0.19 0.11 16 10 C 0.11 2.59 5.31 37.16 0.20 2.79 16 11 O -0.32 -7.22 10.05 -42.00 -0.42 -7.64 16 12 C 0.55 11.07 7.93 34.08 0.27 11.34 16 13 O -0.49 -10.15 14.61 -19.36 -0.28 -10.43 16 14 C -0.08 -1.34 7.25 -36.89 -0.27 -1.61 16 15 O -0.17 -2.65 10.79 4.38 0.05 -2.61 16 16 C 0.20 2.31 13.20 52.25 0.69 3.00 16 17 N -0.49 -6.66 10.89 -10.87 -0.12 -6.78 16 18 C 0.11 1.72 6.67 -82.45 -0.55 1.17 16 19 C -0.09 -1.28 5.60 -91.77 -0.51 -1.79 16 20 C -0.16 -1.71 10.16 -26.69 -0.27 -1.98 16 21 C -0.16 -1.74 10.24 -26.69 -0.27 -2.01 16 22 C -0.19 -4.08 9.94 -26.69 -0.27 -4.35 16 23 C -0.17 -3.71 8.75 -26.69 -0.23 -3.95 16 24 H 0.27 7.81 6.15 -40.82 -0.25 7.56 16 25 H 0.07 1.79 7.76 -51.93 -0.40 1.38 16 26 H 0.05 1.00 8.01 -51.93 -0.42 0.58 16 27 H 0.26 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.14 2.05 6.65 -51.93 -0.35 1.71 16 29 H 0.10 1.14 7.92 -51.93 -0.41 0.73 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -32.01 320.77 -6.49 -38.49 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.41 Total: 2.54 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.80 Total: -12.52 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.63 Total: -32.38 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.66 Total: -20.68 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.01 -6.49 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808987757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.764 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds