Wall clock time and date at job start Thu Apr 9 2020 13:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99992 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46693 * 120.00362 * 3 2 1 6 6 H 1.48502 * 109.46931 * 240.00214 * 3 2 1 7 7 C 1.37875 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00188 * 187.12085 * 7 2 1 9 9 C 1.50695 * 120.00268 * 7.12364 * 7 2 1 10 10 C 1.53002 * 115.54910 * 275.21782 * 9 7 2 11 11 O 1.45201 * 109.46574 * 301.70265 * 10 9 7 12 12 C 1.34888 * 117.00107 * 184.74709 * 11 10 9 13 13 O 1.21618 * 119.99366 * 0.02562 * 12 11 10 14 14 C 1.46537 * 120.00243 * 179.97438 * 12 11 10 15 15 O 1.35357 * 126.65051 * 359.69345 * 14 12 11 16 16 C 1.33658 * 107.67854 * 179.83756 * 15 14 12 17 17 N 1.30638 * 109.17251 * 0.42995 * 16 15 14 18 18 C 1.33657 * 109.00623 * 359.73300 * 17 16 15 19 19 C 1.50700 * 126.27568 * 180.02562 * 18 17 16 20 20 C 1.52999 * 117.50137 * 8.74403 * 19 18 17 21 21 C 1.52999 * 117.49802 * 300.08084 * 19 18 17 22 22 C 1.52999 * 117.50478 * 129.54110 * 9 7 2 23 23 C 1.53005 * 117.49888 * 60.87863 * 9 7 2 24 24 H 0.96996 * 120.00187 * 175.39082 * 1 2 3 25 25 H 1.08995 * 109.47330 * 61.69951 * 10 9 7 26 26 H 1.09003 * 109.46933 * 181.70696 * 10 9 7 27 27 H 1.08004 * 125.41263 * 180.18322 * 16 15 14 28 28 H 1.08999 * 115.54708 * 154.41537 * 19 18 17 29 29 H 1.09001 * 117.49486 * 0.02562 * 20 19 18 30 30 H 1.08999 * 117.50006 * 145.01894 * 20 19 18 31 31 H 1.08990 * 117.50134 * 214.97779 * 21 19 18 32 32 H 1.08998 * 117.49784 * 359.97438 * 21 19 18 33 33 H 1.09000 * 117.49290 * 359.97438 * 22 9 7 34 34 H 1.08992 * 117.50412 * 145.02048 * 22 9 7 35 35 H 1.09000 * 117.49814 * 214.98081 * 23 9 7 36 36 H 1.08996 * 117.49568 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0782 -1.1977 0.1154 9 6 1.2598 -2.4940 -0.1630 10 6 0.6777 -3.0861 1.1222 11 8 1.7462 -3.3073 2.0802 12 6 1.4155 -3.9194 3.2359 13 8 0.2651 -4.2591 3.4364 14 6 2.4425 -4.1760 4.2491 15 8 3.7568 -3.8635 4.1646 16 6 4.3427 -4.2633 5.2975 17 7 3.4474 -4.8165 6.0714 18 6 2.2604 -4.7815 5.4581 19 6 0.9595 -5.3129 6.0025 20 6 0.9385 -5.7691 7.4627 21 6 0.8900 -6.8044 6.3362 22 6 1.7683 -3.4718 -1.2241 23 6 0.4682 -2.6979 -1.4563 24 1 -0.4850 -0.8373 -0.0675 25 1 -0.0507 -2.3936 1.5439 26 1 0.1897 -4.0343 0.8968 27 1 5.3906 -4.1507 5.5336 28 1 0.0583 -4.8426 5.6091 29 1 1.8655 -5.6846 8.0298 30 1 0.0233 -5.5994 8.0299 31 1 -0.0570 -7.3153 6.1628 32 1 1.7850 -7.4014 6.1615 33 1 2.6413 -3.1746 -1.8051 34 1 1.6880 -4.5369 -1.0069 35 1 -0.4669 -3.2542 -1.3917 36 1 0.4857 -1.8916 -2.1895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808987757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:05 Heat of formation + Delta-G solvation = -32.036211 kcal Electronic energy + Delta-G solvation = -21169.469101 eV Core-core repulsion = 17814.628470 eV Total energy + Delta-G solvation = -3354.840631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.65761 -41.41762 -38.99629 -38.49141 -37.19480 -35.56519 -34.02440 -32.00270 -28.97637 -27.02381 -25.83523 -24.81656 -23.35942 -23.19634 -22.52120 -21.61844 -21.46467 -19.42999 -18.93646 -18.22949 -18.15449 -17.52435 -17.11218 -16.40837 -15.95400 -15.72627 -15.63966 -15.04842 -14.79416 -14.65799 -14.12956 -13.91756 -13.18489 -13.06308 -12.92179 -12.68112 -12.45183 -12.31377 -12.28433 -12.03291 -11.97557 -11.91399 -11.56381 -11.55137 -11.28698 -10.56901 -10.49821 -10.40882 -10.09844 -8.59100 -6.32451 -0.56555 1.04659 1.16352 1.52373 1.52948 1.59719 1.79493 1.85022 2.56144 2.81868 2.92610 3.14911 3.16934 3.29784 3.60256 3.87039 3.90036 4.04546 4.11573 4.13349 4.19762 4.31287 4.39307 4.42781 4.57476 4.71234 4.76186 4.87009 4.93083 5.01305 5.09816 5.14455 5.22748 5.34140 5.38238 6.09515 6.18839 6.25652 6.48607 6.65913 7.47571 8.81245 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021293 B = 0.004722 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.693719 B = 5928.250983 C = 6382.217269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.019 4.019 3 Si 1.109 2.891 4 H -0.284 1.284 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.574 4.574 8 H 0.042 0.958 9 C -0.026 4.026 10 C 0.123 3.877 11 O -0.337 6.337 12 C 0.544 3.456 13 O -0.508 6.508 14 C -0.128 4.128 15 O -0.190 6.190 16 C 0.242 3.758 17 N -0.511 5.511 18 C 0.136 3.864 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.167 4.167 23 C -0.159 4.159 24 H 0.264 0.736 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.318 0.682 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 -11.505 11.785 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.219 4.219 3 Si 0.931 3.069 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.612 4.612 8 H 0.060 0.940 9 C -0.027 4.027 10 C 0.049 3.951 11 O -0.252 6.252 12 C 0.389 3.611 13 O -0.400 6.400 14 C -0.181 4.181 15 O -0.076 6.076 16 C 0.019 3.981 17 N -0.240 5.240 18 C 0.012 3.988 19 C -0.150 4.150 20 C -0.175 4.175 21 C -0.181 4.181 22 C -0.204 4.204 23 C -0.197 4.197 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.333 0.667 28 H 0.139 0.861 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.239 -10.163 12.374 17.185 hybrid contribution -0.192 -1.115 -1.029 1.529 sum 6.047 -11.278 11.345 17.102 Atomic orbital electron populations 1.70868 1.07566 1.30920 1.47216 1.27089 0.96626 1.05681 0.92507 0.83034 0.74261 0.71816 0.77755 1.20924 1.20332 1.19313 1.21429 0.94113 0.90970 1.54690 0.93957 1.19163 1.01538 0.96315 0.85671 1.22723 0.86444 0.98150 0.87751 1.86714 1.42364 1.69663 1.26440 1.19393 0.85833 0.74848 0.80979 1.90834 1.19432 1.50960 1.78802 1.21316 0.82734 1.15117 0.98947 1.84633 1.19146 1.62948 1.40886 1.29860 1.02191 0.88902 0.77143 1.70354 0.98976 1.22399 1.32225 1.21311 0.94987 0.94095 0.88363 1.20639 0.91823 1.00516 1.02046 1.23099 1.04965 1.00657 0.88789 1.23080 1.04493 0.88849 1.01711 1.22952 0.97275 0.96372 1.03785 1.22744 0.94932 1.02149 0.99826 0.92573 0.93950 0.91761 0.66727 0.86097 0.87515 0.86211 0.86367 0.88456 0.89546 0.88677 0.89071 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.57 21.45 0.29 -55.17 16 2 C -0.02 -1.09 5.39 84.65 0.46 -0.63 16 3 Si 1.11 50.25 29.91 68.60 2.05 52.30 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.57 -32.30 8.64 25.60 0.22 -32.08 16 8 H 0.04 2.43 7.82 -2.91 -0.02 2.40 16 9 C -0.03 -1.31 1.20 -52.93 -0.06 -1.38 16 10 C 0.12 5.89 5.31 71.98 0.38 6.28 16 11 O -0.34 -15.93 10.05 -57.07 -0.57 -16.51 16 12 C 0.54 22.85 7.93 69.99 0.56 23.41 16 13 O -0.51 -21.83 14.61 19.45 0.28 -21.55 16 14 C -0.13 -4.53 7.25 24.01 0.17 -4.35 16 15 O -0.19 -5.77 10.79 -7.16 -0.08 -5.85 16 16 C 0.24 4.75 13.20 130.42 1.72 6.47 16 17 N -0.51 -12.60 10.89 -303.06 -3.30 -15.90 16 18 C 0.14 4.07 6.67 41.86 0.28 4.35 16 19 C -0.13 -3.50 5.60 -11.54 -0.06 -3.56 16 20 C -0.14 -2.65 10.16 30.62 0.31 -2.34 16 21 C -0.14 -2.89 10.24 30.62 0.31 -2.58 16 22 C -0.17 -7.01 9.94 30.62 0.30 -6.71 16 23 C -0.16 -7.09 8.75 30.62 0.27 -6.83 16 24 H 0.26 15.67 6.15 -92.71 -0.57 15.10 16 25 H 0.04 2.23 7.76 -2.39 -0.02 2.21 16 26 H 0.06 2.77 8.01 -2.39 -0.02 2.75 16 27 H 0.32 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.12 3.66 6.65 -2.39 -0.02 3.65 16 29 H 0.11 2.03 7.92 -2.39 -0.02 2.01 16 30 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.07 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -71.90 320.77 4.83 -67.06 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 1.30 Total: 15.57 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 4.86 Total: -19.95 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -3.01 Total: -71.07 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.37 Total: -43.90 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Total: -71.90 4.83 -67.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808987757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.028 kcal (2) G-P(sol) polarization free energy of solvation -71.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds