Wall clock time and date at job start Thu Apr 9 2020 13:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00180 * 2 1 4 4 H 1.48500 * 109.46999 * 239.99883 * 3 2 1 5 5 H 1.48497 * 109.46788 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47012 * 119.99965 * 3 2 1 7 7 C 1.37877 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00140 * 174.96311 * 7 2 1 9 9 C 1.50698 * 119.99938 * 354.95390 * 7 2 1 10 10 O 1.45203 * 112.84620 * 64.95938 * 9 7 2 11 11 C 1.34879 * 117.00263 * 54.49774 * 10 9 7 12 12 O 1.21607 * 119.99927 * 355.18463 * 11 10 9 13 13 C 1.46545 * 119.99866 * 175.19309 * 11 10 9 14 14 O 1.35365 * 126.65219 * 359.96945 * 13 11 10 15 15 C 1.33648 * 107.68043 * 180.02562 * 14 13 11 16 16 N 1.30643 * 109.17398 * 359.97438 * 15 14 13 17 17 C 1.33655 * 109.00446 * 0.02562 * 16 15 14 18 18 C 1.50701 * 126.27666 * 179.97438 * 17 16 15 19 19 C 1.52998 * 117.49907 * 8.74764 * 18 17 16 20 20 C 1.53007 * 117.49813 * 300.08901 * 18 17 16 21 21 C 1.53784 * 113.69282 * 196.22165 * 9 7 2 22 22 C 1.53780 * 87.08082 * 89.12965 * 21 9 7 23 23 C 1.53779 * 113.61954 * 293.76040 * 9 7 2 24 24 H 0.96998 * 120.00060 * 5.00016 * 1 2 3 25 25 H 1.07999 * 125.41392 * 179.73704 * 15 14 13 26 26 H 1.08994 * 115.55059 * 154.42064 * 18 17 16 27 27 H 1.08994 * 117.50219 * 359.97438 * 19 18 17 28 28 H 1.09003 * 117.50056 * 145.02677 * 19 18 17 29 29 H 1.09000 * 117.49668 * 214.98041 * 20 18 17 30 30 H 1.08997 * 117.49786 * 359.97438 * 20 18 17 31 31 H 1.09004 * 113.61600 * 203.67804 * 21 9 7 32 32 H 1.09002 * 113.61220 * 334.58088 * 21 9 7 33 33 H 1.08997 * 113.61647 * 270.88416 * 22 21 9 34 34 H 1.08997 * 113.68676 * 139.99067 * 22 21 9 35 35 H 1.08996 * 113.61264 * 25.34522 * 23 9 7 36 36 H 1.08995 * 113.61542 * 156.16561 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1958 -0.0827 9 6 1.2554 -2.4966 0.1137 10 8 0.3932 -2.7530 -1.0262 11 6 0.9661 -2.7205 -2.2469 12 8 2.1331 -2.3986 -2.3625 13 6 0.1821 -3.0729 -3.4338 14 8 -1.1180 -3.4488 -3.4612 15 6 -1.4467 -3.6806 -4.7357 16 7 -0.4053 -3.4631 -5.4938 17 6 0.6212 -3.0860 -4.7255 18 6 2.0092 -2.7390 -5.1990 19 6 2.2321 -2.6219 -6.7082 20 6 2.7935 -3.8224 -5.9422 21 6 2.1469 -3.6910 0.4926 22 6 1.8616 -3.3370 1.9617 23 6 0.5566 -2.6887 1.4700 24 1 -0.4850 0.8368 -0.0732 25 1 -2.4179 -4.0009 -5.0832 26 1 2.5712 -2.0643 -4.5535 27 1 1.3750 -2.7962 -7.3585 28 1 2.9411 -1.8704 -7.0554 29 1 3.8716 -3.8601 -5.7857 30 1 2.3057 -4.7862 -6.0881 31 1 1.7383 -4.6547 0.1884 32 1 3.1913 -3.5640 0.2077 33 1 2.5703 -2.6253 2.3849 34 1 1.7037 -4.2070 2.5990 35 1 0.3173 -1.7525 1.9743 36 1 -0.2875 -3.3772 1.4327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:14 Heat of formation + Delta-G solvation = -28.237381 kcal Electronic energy + Delta-G solvation = -22006.170588 eV Core-core repulsion = 18651.494687 eV Total energy + Delta-G solvation = -3354.675901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.49471 -41.04743 -38.98688 -38.35430 -36.15163 -35.40899 -34.39146 -31.66658 -28.27541 -26.45334 -26.24468 -24.77636 -24.39742 -23.28198 -22.23433 -21.34931 -20.49870 -19.27048 -18.38769 -17.95259 -17.51849 -17.10476 -16.82053 -16.27622 -16.03949 -15.69521 -15.58746 -15.06306 -14.68051 -14.19714 -13.53871 -13.13630 -13.03933 -12.96805 -12.93956 -12.80385 -12.42342 -12.28446 -12.16091 -12.04469 -11.90884 -11.69261 -11.62554 -11.46916 -11.16083 -10.84674 -10.56780 -10.49272 -9.91513 -8.21751 -6.37440 -0.27823 1.32604 1.34086 1.35042 1.42630 1.43979 1.99515 2.32556 2.38062 2.90268 3.02625 3.10612 3.42544 3.85969 3.95609 3.98889 4.08174 4.14496 4.24970 4.30744 4.42917 4.55109 4.64200 4.72632 4.84197 4.90337 4.92200 5.12913 5.13310 5.21977 5.26812 5.35180 5.41665 5.60418 5.72288 5.84495 6.31013 6.42997 6.65697 7.14584 7.34198 8.82049 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.006628 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.160449 B = 4223.236163 C = 4687.315539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.030 3.970 3 Si 0.947 3.053 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.209 3.791 10 O -0.355 6.355 11 C 0.544 3.456 12 O -0.495 6.495 13 C -0.118 4.118 14 O -0.192 6.192 15 C 0.224 3.776 16 N -0.509 5.509 17 C 0.113 3.887 18 C -0.127 4.127 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.154 4.154 22 C -0.108 4.108 23 C -0.107 4.107 24 H 0.263 0.737 25 H 0.317 0.683 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 -8.084 -8.455 11.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.173 4.173 3 Si 0.772 3.228 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.176 3.824 10 O -0.271 6.271 11 C 0.387 3.613 12 O -0.385 6.385 13 C -0.171 4.171 14 O -0.078 6.078 15 C 0.000 4.000 16 N -0.238 5.238 17 C -0.010 4.010 18 C -0.146 4.146 19 C -0.176 4.176 20 C -0.180 4.180 21 C -0.192 4.192 22 C -0.145 4.145 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.331 0.669 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.903 -7.937 -8.929 11.980 hybrid contribution 0.097 1.271 0.795 1.502 sum -0.806 -6.666 -8.133 10.547 Atomic orbital electron populations 1.70113 1.06949 1.27774 1.48096 1.25729 0.95616 1.02249 0.93665 0.85776 0.78739 0.79216 0.79033 1.20623 1.20503 1.18420 1.21025 0.93021 0.90006 1.51376 0.92707 1.21668 0.87755 0.93076 0.79945 1.86596 1.45813 1.79594 1.15071 1.19070 0.84528 0.74842 0.82844 1.90780 1.16758 1.44403 1.86605 1.22091 0.83727 1.15489 0.95772 1.84592 1.25226 1.64246 1.33709 1.29742 1.01647 0.93631 0.74959 1.70259 0.99327 1.19619 1.34564 1.21206 0.96243 0.96526 0.87022 1.20540 0.89854 1.06572 0.97665 1.23070 1.03527 1.00593 0.90439 1.23045 1.00182 0.93694 1.01063 1.23511 0.99778 0.97894 0.98031 1.22429 0.96886 1.00447 0.94757 1.22885 0.96979 0.99617 0.94974 0.92777 0.66900 0.86878 0.87501 0.86500 0.86595 0.88374 0.90640 0.92613 0.90305 0.88848 0.92825 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.89 12.54 21.45 0.27 -51.62 16 2 C 0.03 1.69 5.24 84.66 0.44 2.13 16 3 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.52 -29.02 6.29 25.60 0.16 -28.86 16 8 H 0.05 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.21 10.72 0.50 -11.01 -0.01 10.72 16 10 O -0.35 -19.01 9.94 -56.98 -0.57 -19.58 16 11 C 0.54 27.58 7.58 69.99 0.53 28.11 16 12 O -0.50 -26.36 13.24 19.49 0.26 -26.11 16 13 C -0.12 -5.01 7.25 24.02 0.17 -4.84 16 14 O -0.19 -6.91 10.79 -7.15 -0.08 -6.99 16 15 C 0.22 5.54 13.20 130.42 1.72 7.26 16 16 N -0.51 -15.41 10.89 -303.08 -3.30 -18.71 16 17 C 0.11 4.15 6.67 41.86 0.28 4.43 16 18 C -0.13 -4.30 5.60 -11.54 -0.06 -4.37 16 19 C -0.14 -3.47 10.15 30.62 0.31 -3.16 16 20 C -0.14 -3.66 10.24 30.62 0.31 -3.35 16 21 C -0.15 -6.65 7.29 31.12 0.23 -6.42 16 22 C -0.11 -4.12 7.81 31.12 0.24 -3.87 16 23 C -0.11 -4.89 7.19 31.12 0.22 -4.67 16 24 H 0.26 14.66 8.32 -92.71 -0.77 13.89 16 25 H 0.32 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.11 4.45 6.65 -2.39 -0.02 4.44 16 27 H 0.11 2.58 7.92 -2.39 -0.02 2.56 16 28 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.12 2.59 8.14 -2.39 -0.02 2.58 16 30 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.06 2.45 8.09 -2.39 -0.02 2.43 16 33 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.05 2.68 7.63 -2.39 -0.02 2.66 16 36 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -71.97 314.74 4.26 -67.71 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 1.09 Total: 15.50 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.56 Total: -6.89 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -3.03 Total: -70.33 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -0.39 Total: -52.67 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -71.97 4.26 -67.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.471 kcal (2) G-P(sol) polarization free energy of solvation -71.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds