Wall clock time and date at job start Thu Apr 9 2020 13:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99833 * 2 1 4 4 H 1.48492 * 109.47200 * 265.21168 * 3 2 1 5 5 H 1.48503 * 109.47040 * 25.21495 * 3 2 1 6 6 H 1.48505 * 109.47065 * 145.21258 * 3 2 1 7 7 C 1.37881 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99638 * 354.09591 * 7 2 1 9 9 C 1.50699 * 120.00030 * 174.09465 * 7 2 1 10 10 H 1.08999 * 109.46866 * 55.38025 * 9 7 2 11 11 O 1.45202 * 109.47261 * 295.37799 * 9 7 2 12 12 C 1.34776 * 117.00020 * 150.00247 * 11 9 7 13 13 O 1.21532 * 119.99968 * 0.02562 * 12 11 9 14 14 C 1.47271 * 119.99773 * 180.02562 * 12 11 9 15 15 C 1.36172 * 126.45898 * 180.02562 * 14 12 11 16 16 O 1.34224 * 106.94208 * 179.97438 * 15 14 12 17 17 C 1.34053 * 108.24523 * 359.97438 * 16 15 14 18 18 C 1.50702 * 125.37190 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.49692 * 351.27178 * 18 17 16 20 20 C 1.53005 * 117.49792 * 59.93296 * 18 17 16 21 21 N 1.29920 * 109.25669 * 0.26035 * 17 16 15 22 22 C 1.53004 * 109.46754 * 175.37941 * 9 7 2 23 23 C 1.53003 * 117.49748 * 253.99047 * 22 9 7 24 24 C 1.53000 * 117.49669 * 185.33269 * 22 9 7 25 25 H 0.96994 * 120.00394 * 0.02562 * 1 2 3 26 26 H 1.08007 * 126.52412 * 359.95485 * 15 14 12 27 27 H 1.08995 * 115.54950 * 205.60495 * 18 17 16 28 28 H 1.08997 * 117.50081 * 215.00037 * 19 18 17 29 29 H 1.09000 * 117.49804 * 0.02880 * 19 18 17 30 30 H 1.08994 * 117.49777 * 359.97438 * 20 18 17 31 31 H 1.09002 * 117.49427 * 144.97735 * 20 18 17 32 32 H 1.08995 * 115.54846 * 39.66482 * 22 9 7 33 33 H 1.08999 * 117.49610 * 0.02562 * 23 22 9 34 34 H 1.08994 * 117.49439 * 145.02337 * 23 22 9 35 35 H 1.08998 * 117.50228 * 214.97927 * 24 22 9 36 36 H 1.09007 * 117.50120 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5978 1.9880 -1.3951 5 1 1.3995 2.6798 0.5965 6 1 3.4924 1.4716 0.7988 7 6 2.0046 -1.1940 0.0005 8 1 1.4689 -2.1268 0.0972 9 6 3.5056 -1.1975 -0.1337 10 1 3.9414 -0.5714 0.6448 11 8 3.8761 -0.6769 -1.4376 12 6 5.0588 -0.0368 -1.5273 13 8 5.7613 0.0825 -0.5429 14 6 5.4996 0.5180 -2.8183 15 6 6.6625 1.1849 -3.0577 16 8 6.6646 1.5128 -4.3593 17 6 5.5295 1.0578 -4.9085 18 6 5.1360 1.2148 -6.3547 19 6 6.0029 2.1242 -7.2279 20 6 6.0623 0.6053 -7.4090 21 7 4.8198 0.4645 -3.9962 22 6 4.0272 -2.6286 0.0110 23 6 4.7339 -2.9940 1.3179 24 6 5.5439 -2.8291 0.0295 25 1 -0.4850 0.8400 -0.0004 26 1 7.4358 1.4077 -2.3373 27 1 4.0648 1.1969 -6.5551 28 1 5.5020 2.7044 -8.0028 29 1 6.8580 2.6085 -6.7564 30 1 6.9564 0.0911 -7.0566 31 1 5.6003 0.1860 -8.3028 32 1 3.4233 -3.3996 -0.4673 33 1 4.8269 -2.2151 2.0746 34 1 4.5953 -4.0057 1.6991 35 1 5.9378 -3.7324 -0.4363 36 1 6.1701 -1.9416 -0.0619 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350299398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:54 Heat of formation + Delta-G solvation = -4.436029 kcal Electronic energy + Delta-G solvation = -21383.495156 eV Core-core repulsion = 18029.851359 eV Total energy + Delta-G solvation = -3353.643797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.41419 -39.55173 -37.46443 -36.67904 -35.06372 -34.76477 -32.70718 -30.34651 -28.59218 -24.65954 -24.31913 -23.03812 -22.73600 -21.74180 -21.36808 -19.93855 -19.36713 -17.91468 -17.07430 -16.96799 -16.73747 -15.92500 -15.65059 -15.57367 -14.78581 -14.48462 -13.88758 -13.59531 -13.35255 -12.70737 -12.55010 -12.08695 -11.91865 -11.70117 -11.55986 -11.30525 -10.96415 -10.90840 -10.86494 -10.73788 -10.61090 -10.31948 -10.01133 -9.74004 -9.46603 -9.40890 -9.04304 -8.89057 -8.74292 -6.32714 -4.38533 1.10027 2.02392 2.46874 3.20924 3.26634 3.37068 3.38602 3.42354 3.59933 3.82490 4.30157 4.41730 4.52299 4.56867 4.79077 4.85789 5.03898 5.27988 5.38827 5.44349 5.51335 5.56620 5.63316 5.67005 5.73691 5.75533 5.82038 6.08909 6.18776 6.30266 6.49524 6.62323 6.74990 6.95719 7.34903 7.52097 7.63069 8.25789 8.62240 8.74976 9.29019 10.76643 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.005886 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.871188 B = 4755.842217 C = 5528.271261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.094 3.906 3 Si 0.864 3.136 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.505 4.505 8 H 0.090 0.910 9 C 0.201 3.799 10 H 0.053 0.947 11 O -0.327 6.327 12 C 0.533 3.467 13 O -0.521 6.521 14 C -0.043 4.043 15 C 0.003 3.997 16 O -0.198 6.198 17 C 0.215 3.785 18 C -0.069 4.069 19 C -0.164 4.164 20 C -0.157 4.157 21 N -0.427 5.427 22 C -0.139 4.139 23 C -0.169 4.169 24 C -0.202 4.202 25 H 0.271 0.729 26 H 0.233 0.767 27 H 0.149 0.851 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.685 2.990 -11.702 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.114 4.114 3 Si 0.691 3.309 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.541 4.541 8 H 0.108 0.892 9 C 0.150 3.850 10 H 0.070 0.930 11 O -0.242 6.242 12 C 0.377 3.623 13 O -0.413 6.413 14 C -0.162 4.162 15 C -0.069 4.069 16 O -0.085 6.085 17 C 0.006 3.994 18 C -0.088 4.088 19 C -0.201 4.201 20 C -0.195 4.195 21 N -0.155 5.155 22 C -0.158 4.158 23 C -0.206 4.206 24 C -0.238 4.238 25 H 0.081 0.919 26 H 0.249 0.751 27 H 0.167 0.833 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.059 2.809 -11.463 17.602 hybrid contribution 0.946 1.121 0.328 1.503 sum 14.005 3.930 -11.135 18.319 Atomic orbital electron populations 1.69896 1.06389 1.27929 1.46238 1.25025 0.94710 0.99452 0.92220 0.86973 0.80873 0.83375 0.79709 1.19280 1.20960 1.18266 1.20993 0.87990 0.95442 1.49665 0.89156 1.20856 0.96059 0.88687 0.79362 0.92978 1.87226 1.31947 1.63088 1.41917 1.19713 0.81669 0.75788 0.85097 1.90748 1.55751 1.57939 1.36853 1.21298 0.94469 1.06737 0.93653 1.25257 1.00311 0.98718 0.82649 1.84303 1.40306 1.62012 1.21863 1.25218 0.81423 0.96264 0.96452 1.20261 0.99631 1.08316 0.80563 1.23128 1.01902 0.93523 1.01567 1.23148 1.01026 0.96054 0.99307 1.70917 1.29135 1.17288 0.98208 1.22620 0.92941 0.99482 1.00708 1.22804 1.04640 1.01764 0.91364 1.23166 0.95435 1.03047 1.02192 0.91900 0.75050 0.83308 0.87185 0.87855 0.88138 0.87045 0.87875 0.89004 0.89390 0.89976 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.96 55.43 0.77 -25.45 16 2 C 0.09 2.75 5.47 -17.82 -0.10 2.65 16 3 Si 0.86 22.76 25.98 -169.99 -4.42 18.34 16 4 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.76 6.52 56.52 0.37 -6.39 16 7 C -0.51 -14.56 9.32 -34.44 -0.32 -14.88 16 8 H 0.09 2.72 7.99 -52.49 -0.42 2.30 16 9 C 0.20 5.17 1.52 -27.88 -0.04 5.13 16 10 H 0.05 1.40 5.58 -51.93 -0.29 1.11 16 11 O -0.33 -8.44 8.56 -40.70 -0.35 -8.79 16 12 C 0.53 12.29 6.72 34.40 0.23 12.52 16 13 O -0.52 -11.98 13.88 -19.29 -0.27 -12.25 16 14 C -0.04 -0.85 7.04 -83.04 -0.58 -1.43 16 15 C 0.00 0.05 11.95 29.99 0.36 0.41 16 16 O -0.20 -2.77 10.40 6.59 0.07 -2.70 16 17 C 0.22 3.26 7.79 -13.09 -0.10 3.16 16 18 C -0.07 -0.74 6.33 -91.77 -0.58 -1.32 16 19 C -0.16 -1.23 10.16 -26.69 -0.27 -1.51 16 20 C -0.16 -1.23 10.24 -26.69 -0.27 -1.50 16 21 N -0.43 -8.39 11.36 -7.67 -0.09 -8.48 16 22 C -0.14 -3.06 5.29 -90.62 -0.48 -3.54 16 23 C -0.17 -3.16 10.18 -26.69 -0.27 -3.43 16 24 C -0.20 -3.85 9.83 -26.69 -0.26 -4.11 16 25 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.23 2.56 8.06 -52.48 -0.42 2.14 16 27 H 0.15 1.49 8.14 -51.93 -0.42 1.06 16 28 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.79 7.94 -51.93 -0.41 0.38 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 2.24 8.14 -51.93 -0.42 1.82 16 33 H 0.09 1.74 8.08 -51.93 -0.42 1.32 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.10 2.07 5.57 -51.93 -0.29 1.78 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -33.78 315.24 -6.60 -40.38 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.38 Total: 2.04 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.70 Total: -7.85 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.69 Total: -33.93 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.55 Total: -23.73 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.42 Total: 18.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.78 -6.60 -40.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350299398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.947 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds