Wall clock time and date at job start Thu Apr 9 2020 13:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 11 11 O 1.45199 * 109.46941 * 180.02562 * 9 7 2 12 12 C 1.34760 * 117.00566 * 150.00223 * 11 9 7 13 13 O 1.21536 * 119.99573 * 359.97438 * 12 11 9 14 14 C 1.47247 * 120.00515 * 180.02562 * 12 11 9 15 15 C 1.37447 * 128.57388 * 359.66957 * 14 12 11 16 16 O 1.33466 * 106.32451 * 179.89349 * 15 14 12 17 17 N 1.20654 * 113.17738 * 0.41429 * 16 15 14 18 18 C 1.30000 * 112.32516 * 359.74208 * 17 16 15 19 19 C 1.50701 * 127.34001 * 180.02562 * 18 17 16 20 20 C 1.52999 * 117.49499 * 8.70518 * 19 18 17 21 21 C 1.53002 * 117.49551 * 300.04545 * 19 18 17 22 22 C 1.53006 * 109.47303 * 60.00618 * 9 7 2 23 23 C 1.52997 * 117.49372 * 248.74448 * 22 9 7 24 24 C 1.52997 * 117.49914 * 180.08414 * 22 9 7 25 25 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 26 26 H 1.07999 * 126.83429 * 359.97438 * 15 14 12 27 27 H 1.08993 * 115.54873 * 154.37573 * 19 18 17 28 28 H 1.08996 * 117.50131 * 359.97438 * 20 19 18 29 29 H 1.08995 * 117.49700 * 145.02347 * 20 19 18 30 30 H 1.09002 * 117.49413 * 214.97741 * 21 19 18 31 31 H 1.08995 * 117.50072 * 359.97438 * 21 19 18 32 32 H 1.09000 * 115.55084 * 34.40880 * 22 9 7 33 33 H 1.09001 * 117.50514 * 359.97438 * 23 22 9 34 34 H 1.09006 * 117.49799 * 145.01869 * 23 22 9 35 35 H 1.09000 * 117.49627 * 214.97448 * 24 22 9 36 36 H 1.08996 * 117.50177 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6281 -2.5552 0.8979 11 8 2.1945 -3.6028 0.0041 12 6 1.8041 -4.7423 0.6084 13 8 0.7051 -4.8115 1.1228 14 6 2.7092 -5.9031 0.6465 15 6 3.9746 -6.0207 0.1230 16 8 4.3875 -7.2561 0.4136 17 7 3.5678 -7.9001 1.0211 18 6 2.4799 -7.2259 1.2488 19 6 1.2470 -7.6982 1.9753 20 6 1.3226 -9.0483 2.6911 21 6 0.5096 -8.9098 1.4015 22 6 0.3662 -2.5827 -1.2402 23 6 -1.1486 -2.5147 -1.0363 24 6 -0.4861 -3.8408 -1.4182 25 1 -0.4850 0.8401 0.0004 26 1 4.5256 -5.2636 -0.4152 27 1 0.6456 -6.9160 2.4384 28 1 2.2639 -9.5950 2.6363 29 1 0.7706 -9.1544 3.6250 30 1 -0.5769 -8.9248 1.4875 31 1 0.9160 -9.3650 0.4984 32 1 0.7744 -2.1201 -2.1388 33 1 -1.5149 -2.4108 -0.0150 34 1 -1.7371 -2.0076 -1.8011 35 1 -0.6390 -4.2056 -2.4339 36 1 -0.4163 -4.6091 -0.6482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350301067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:57 Heat of formation + Delta-G solvation = 26.395506 kcal Electronic energy + Delta-G solvation = -21440.242729 eV Core-core repulsion = 18087.935888 eV Total energy + Delta-G solvation = -3352.306841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.88373 -39.54606 -37.54798 -36.38890 -34.93381 -33.17645 -32.69231 -31.85597 -28.01907 -25.24306 -24.25444 -23.13569 -22.47578 -21.28763 -20.79174 -20.21668 -19.28563 -18.01505 -17.65546 -16.89246 -16.47708 -15.85623 -15.42897 -15.18637 -14.73523 -14.44396 -13.95029 -13.54616 -12.89273 -12.63241 -12.16322 -11.73223 -11.69206 -11.64218 -11.45468 -11.33226 -11.07069 -10.99681 -10.53396 -10.46835 -10.32554 -9.90226 -9.86592 -9.65196 -9.54911 -9.44868 -9.07961 -8.70752 -8.47429 -6.19871 -4.28392 1.14519 1.71786 2.91560 3.22297 3.28649 3.31314 3.39747 3.53235 3.77453 4.02814 4.23342 4.31799 4.83206 4.88986 4.99799 5.01506 5.05483 5.12724 5.52558 5.55889 5.61990 5.75850 5.89605 5.93557 6.00612 6.12199 6.13587 6.35025 6.53059 6.61683 6.96886 7.11636 7.19401 7.33486 7.55781 7.79027 8.03143 8.18888 8.52570 8.81428 9.36400 10.86778 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.023849 B = 0.004888 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.773749 B = 5726.666340 C = 6355.950184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.252 3.748 10 H 0.050 0.950 11 O -0.346 6.346 12 C 0.535 3.465 13 O -0.504 6.504 14 C -0.229 4.229 15 C 0.018 3.982 16 O 0.091 5.909 17 N -0.363 5.363 18 C 0.102 3.898 19 C -0.085 4.085 20 C -0.166 4.166 21 C -0.158 4.158 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.229 4.229 25 H 0.265 0.735 26 H 0.236 0.764 27 H 0.140 0.860 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -12.539 0.524 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.199 3.801 10 H 0.068 0.932 11 O -0.263 6.263 12 C 0.378 3.622 13 O -0.395 6.395 14 C -0.234 4.234 15 C -0.064 4.064 16 O 0.033 5.967 17 N -0.071 5.071 18 C -0.060 4.060 19 C -0.104 4.104 20 C -0.203 4.203 21 C -0.196 4.196 22 C -0.135 4.135 23 C -0.160 4.160 24 C -0.266 4.266 25 H 0.074 0.926 26 H 0.253 0.747 27 H 0.158 0.842 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.528 -13.585 0.931 14.066 hybrid contribution -0.158 1.912 -0.279 1.939 sum 3.370 -11.673 0.651 12.167 Atomic orbital electron populations 1.70045 1.05764 1.27094 1.47829 1.24873 0.95033 0.99068 0.94469 0.86349 0.79692 0.82257 0.78271 1.20419 1.21016 1.19663 1.20879 0.93819 0.88232 1.53816 0.91241 1.20285 0.86002 0.79957 0.93809 0.93214 1.86537 1.49421 1.21618 1.68685 1.19393 0.84207 0.82598 0.75965 1.90759 1.21550 1.83318 1.43899 1.21588 0.96779 0.95485 1.09576 1.26688 0.94724 0.87912 0.97044 1.84547 1.37082 1.21093 1.53930 1.73580 1.00749 1.19203 1.13539 1.23806 0.94691 0.89140 0.98363 1.20386 0.94049 0.93012 1.02962 1.23048 1.02652 0.98067 0.96572 1.23021 0.99321 0.99493 0.97734 1.22605 0.92955 0.97508 1.00441 1.22369 0.95449 0.96687 1.01452 1.23285 1.09413 0.92989 1.00934 0.92553 0.74742 0.84208 0.88151 0.87900 0.87665 0.88673 0.89257 0.89289 0.90738 0.91037 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.54 11.42 55.43 0.63 -22.91 16 2 C 0.07 1.84 5.31 -17.82 -0.09 1.75 16 3 Si 0.91 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.53 -14.16 8.88 -34.44 -0.31 -14.47 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.25 6.38 2.26 -27.88 -0.06 6.32 16 10 H 0.05 1.40 6.92 -51.93 -0.36 1.05 16 11 O -0.35 -7.78 9.75 -40.66 -0.40 -8.18 16 12 C 0.53 10.94 7.17 34.39 0.25 11.19 16 13 O -0.50 -11.24 12.89 -19.29 -0.25 -11.49 16 14 C -0.23 -3.80 6.47 -102.91 -0.67 -4.46 16 15 C 0.02 0.23 12.24 30.44 0.37 0.60 16 16 O 0.09 1.20 11.06 18.72 0.21 1.41 16 17 N -0.36 -5.31 11.71 34.79 0.41 -4.90 16 18 C 0.10 1.58 7.08 -79.75 -0.56 1.01 16 19 C -0.09 -1.19 5.90 -91.77 -0.54 -1.73 16 20 C -0.17 -1.83 10.17 -26.69 -0.27 -2.10 16 21 C -0.16 -1.81 10.24 -26.69 -0.27 -2.08 16 22 C -0.12 -2.77 4.47 -90.62 -0.40 -3.17 16 23 C -0.12 -2.76 9.04 -26.69 -0.24 -3.00 16 24 C -0.23 -4.85 9.81 -26.69 -0.26 -5.11 16 25 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.24 2.17 8.06 -52.49 -0.42 1.75 16 27 H 0.14 2.11 7.29 -51.93 -0.38 1.73 16 28 H 0.10 1.12 7.97 -51.93 -0.41 0.71 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 2.19 8.11 -51.93 -0.42 1.76 16 33 H 0.09 2.14 8.05 -51.93 -0.42 1.72 16 34 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.09 2.06 5.37 -51.93 -0.28 1.78 16 LS Contribution 315.28 15.07 4.75 4.75 Total: -1.00 -29.21 315.28 -7.09 -36.29 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.35 Total: 4.94 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -3.07 Total: -15.25 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 1.04 Total: -27.81 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.44 Total: -18.26 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.21 -7.09 -36.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350301067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.689 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds