Wall clock time and date at job start Thu Apr 9 2020 13:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00071 * 2 1 4 4 C 1.53000 * 109.47479 * 240.00086 * 3 2 1 5 5 O 1.42902 * 109.46885 * 0.02562 * 3 2 1 6 6 C 1.50700 * 109.46849 * 119.99847 * 3 2 1 7 7 O 1.21294 * 120.00054 * 25.00508 * 6 3 2 8 8 N 1.34777 * 120.00069 * 205.00094 * 6 3 2 9 9 C 1.39998 * 119.99883 * 175.48710 * 8 6 3 10 10 C 1.38919 * 119.99823 * 215.12445 * 9 8 6 11 11 C 1.38008 * 119.99528 * 180.02562 * 10 9 8 12 12 C 1.38906 * 120.00027 * 0.02562 * 11 10 9 13 13 O 1.35779 * 119.99628 * 179.97438 * 12 11 10 14 14 C 1.34813 * 117.00053 * 5.34551 * 13 12 11 15 15 H 1.08006 * 120.00096 * 354.96748 * 14 13 12 16 16 C 1.38640 * 120.00405 * 174.96174 * 14 13 12 17 17 N 1.31576 * 119.99451 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00243 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47148 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46845 * 120.00185 * 18 16 14 21 21 H 1.48494 * 109.46913 * 240.00000 * 18 16 14 22 22 C 1.38906 * 120.00568 * 0.25046 * 12 11 10 23 23 C 1.38006 * 119.99988 * 359.45174 * 22 12 11 24 24 H 1.07995 * 119.99710 * 179.97438 * 1 2 3 25 25 H 1.07994 * 119.99859 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.99820 * 180.02562 * 2 1 3 27 27 H 1.08992 * 109.46907 * 300.00063 * 4 3 2 28 28 H 1.08999 * 109.46801 * 60.00515 * 4 3 2 29 29 H 1.09002 * 109.46971 * 180.02562 * 4 3 2 30 30 H 0.96702 * 114.00109 * 60.00262 * 5 3 2 31 31 H 0.97000 * 120.00262 * 355.48484 * 8 6 3 32 32 H 1.07995 * 120.00344 * 359.97438 * 10 9 8 33 33 H 1.08004 * 119.99551 * 179.97438 * 11 10 9 34 34 H 0.97001 * 119.99505 * 179.97438 * 17 16 14 35 35 H 1.08004 * 119.99898 * 179.71013 * 22 12 11 36 36 H 1.07995 * 120.00030 * 180.27303 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3862 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9299 1.3848 1.2305 7 8 3.3002 0.3681 1.7785 8 7 3.2934 2.5860 1.7221 9 6 4.0182 2.6629 2.9173 10 6 3.7980 3.7156 3.7966 11 6 4.5130 3.7916 4.9746 12 6 5.4531 2.8160 5.2807 13 8 6.1569 2.8912 6.4394 14 6 5.8183 3.8734 7.2985 15 1 5.0754 4.6050 7.0167 16 6 6.4235 3.9444 8.5438 17 7 7.3288 3.0533 8.8869 18 14 5.9549 5.3058 9.7339 19 1 4.9216 6.1726 9.1124 20 1 5.4142 4.7084 10.9812 21 1 7.1558 6.1182 10.0543 22 6 5.6775 1.7665 4.3987 23 6 4.9582 1.6870 3.2236 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 3.6514 0.5578 -1.2492 28 1 2.3165 1.3286 -2.1392 29 1 3.4885 2.3300 -1.2489 30 1 0.5439 2.4030 0.7659 31 1 3.0527 3.3972 1.2477 32 1 3.0679 4.4748 3.5581 33 1 4.3421 4.6102 5.6581 34 1 7.7526 3.1032 9.7580 35 1 6.4118 1.0105 4.6346 36 1 5.1295 0.8686 2.5400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463541315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:05 Heat of formation + Delta-G solvation = -57.548030 kcal Electronic energy + Delta-G solvation = -20721.095676 eV Core-core repulsion = 17365.148770 eV Total energy + Delta-G solvation = -3355.946906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64178 -38.96247 -37.68746 -36.42176 -34.06172 -33.07871 -32.20382 -30.78200 -30.24199 -27.97697 -25.46166 -24.56513 -22.38476 -21.87675 -20.46943 -19.82744 -18.48175 -17.88547 -17.38768 -16.89084 -16.21385 -15.34199 -15.12554 -14.58411 -14.48876 -14.16424 -13.61608 -13.59673 -13.19071 -12.89955 -12.82394 -12.54081 -12.51920 -12.43178 -11.87539 -11.77140 -11.57088 -11.54717 -11.06647 -11.04795 -10.71628 -10.44917 -9.97849 -9.68458 -9.42198 -9.20223 -8.73089 -8.23403 -6.96866 -6.46358 -4.04471 1.88762 2.00821 2.17718 2.73686 3.11604 3.12777 3.18313 3.22205 3.74395 3.95420 4.36559 4.51311 4.64600 4.79803 5.05320 5.07852 5.30688 5.35154 5.39602 5.53325 5.64563 5.75720 5.76501 6.11288 6.18790 6.24747 6.28273 6.34498 6.77972 6.81380 6.91153 7.08461 7.12762 7.20617 7.38741 7.67063 7.75414 7.98133 8.27624 8.99006 9.69101 10.71614 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.040260 B = 0.003356 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.318543 B = 8340.749889 C = 8565.542606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.166 4.166 3 C 0.149 3.851 4 C -0.133 4.133 5 O -0.548 6.548 6 C 0.484 3.516 7 O -0.518 6.518 8 N -0.650 5.650 9 C 0.029 3.971 10 C -0.088 4.088 11 C -0.220 4.220 12 C 0.148 3.852 13 O -0.176 6.176 14 C -0.392 4.392 15 H 0.093 0.907 16 C 0.039 3.961 17 N -0.861 5.861 18 Si 0.942 3.058 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.180 4.180 23 C -0.067 4.067 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.383 0.617 31 H 0.407 0.593 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.270 0.730 35 H 0.121 0.879 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.397 -0.501 -16.838 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.185 4.185 3 C 0.105 3.895 4 C -0.190 4.190 5 O -0.355 6.355 6 C 0.269 3.731 7 O -0.394 6.394 8 N -0.295 5.295 9 C -0.063 4.063 10 C -0.108 4.108 11 C -0.240 4.240 12 C 0.094 3.906 13 O -0.079 6.079 14 C -0.468 4.468 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.496 5.496 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.200 4.200 23 C -0.087 4.087 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.144 0.856 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.232 0.768 31 H 0.242 0.758 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.511 -1.276 -16.713 19.785 hybrid contribution -0.721 0.963 0.972 1.546 sum -11.232 -0.313 -15.741 19.340 Atomic orbital electron populations 1.23842 0.95744 1.02567 0.99515 1.23213 0.96347 0.97959 1.00934 1.20380 0.88549 0.86235 0.94330 1.21699 0.98794 1.03610 0.94887 1.86561 1.50484 1.48447 1.50000 1.21261 0.81808 0.83921 0.86120 1.90718 1.54729 1.34671 1.59260 1.43213 1.54046 1.08757 1.23469 1.17301 0.99313 1.00715 0.88950 1.20493 0.99387 0.97606 0.93308 1.20981 1.01841 1.02382 0.98799 1.19421 0.90342 0.92861 0.87963 1.83991 1.50859 1.49623 1.23451 1.21375 1.24514 1.05961 0.94979 0.88990 1.25304 0.95974 0.98467 0.96821 1.70060 1.24406 1.33755 1.21374 0.85638 0.78587 0.79461 0.79676 1.19098 1.20135 1.20137 1.20156 1.04859 0.99598 0.95350 1.20734 0.93306 0.97956 0.96681 0.87691 0.87802 0.85621 0.90127 0.90485 0.91031 0.76776 0.75792 0.87109 0.85053 0.92035 0.86094 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 13.93 29.01 0.40 -1.10 16 2 C -0.17 -1.67 8.15 -36.03 -0.29 -1.96 16 3 C 0.15 1.53 1.28 -92.92 -0.12 1.42 16 4 C -0.13 -1.16 8.81 37.16 0.33 -0.83 16 5 O -0.55 -4.84 11.31 -35.23 -0.40 -5.24 16 6 C 0.48 6.76 6.53 -10.99 -0.07 6.69 16 7 O -0.52 -9.21 13.70 5.55 0.08 -9.14 16 8 N -0.65 -8.97 5.22 -9.82 -0.05 -9.02 16 9 C 0.03 0.52 6.30 -83.62 -0.53 0.00 16 10 C -0.09 -1.58 9.96 -39.41 -0.39 -1.97 16 11 C -0.22 -4.72 9.16 -39.42 -0.36 -5.08 16 12 C 0.15 3.61 6.65 -39.09 -0.26 3.35 16 13 O -0.18 -5.04 9.76 0.01 0.00 -5.04 16 14 C -0.39 -10.90 9.48 30.88 0.29 -10.61 16 15 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 17 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 18 Si 0.94 20.39 29.55 -169.99 -5.02 15.36 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 22 C -0.18 -3.98 9.98 -39.42 -0.39 -4.37 16 23 C -0.07 -1.33 8.69 -39.41 -0.34 -1.67 16 24 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 25 H 0.10 0.75 6.41 -52.49 -0.34 0.41 16 26 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.38 2.56 8.05 45.56 0.37 2.93 16 31 H 0.41 4.44 8.33 -40.82 -0.34 4.10 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.13 2.78 5.63 -52.48 -0.30 2.48 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.12 2.59 8.06 -52.48 -0.42 2.17 16 36 H 0.13 2.48 6.23 -52.49 -0.33 2.15 16 LS Contribution 313.75 15.07 4.73 4.73 Total: -1.00 -32.78 313.75 -5.04 -37.82 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -3.30 Total: 10.20 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.83 Total: -15.17 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.71 Total: -33.52 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.32 Total: -19.42 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.78 -5.04 -37.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463541315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.730 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds