Wall clock time and date at job start Thu Apr 9 2020 13:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 120.00205 * 2 1 4 4 C 1.52991 * 109.47231 * 119.99442 * 3 2 1 5 5 O 1.42907 * 109.46853 * 359.97438 * 3 2 1 6 6 C 1.50698 * 109.47177 * 240.00091 * 3 2 1 7 7 O 1.21296 * 119.99407 * 334.99744 * 6 3 2 8 8 N 1.34770 * 120.00198 * 154.99613 * 6 3 2 9 9 C 1.39989 * 120.00127 * 185.21050 * 8 6 3 10 10 C 1.38918 * 120.00728 * 213.40083 * 9 8 6 11 11 C 1.38001 * 120.00394 * 179.76421 * 10 9 8 12 12 C 1.38912 * 119.99876 * 0.49232 * 11 10 9 13 13 O 1.35776 * 120.00084 * 179.74310 * 12 11 10 14 14 C 1.34810 * 117.00251 * 185.93845 * 13 12 11 15 15 H 1.08002 * 119.99793 * 5.39999 * 14 13 12 16 16 C 1.38633 * 120.00303 * 185.40794 * 14 13 12 17 17 N 1.31578 * 119.99349 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00326 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47152 * 59.99765 * 18 16 14 20 20 H 1.48495 * 109.47521 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47165 * 299.99995 * 18 16 14 22 22 C 1.38909 * 120.00093 * 359.76799 * 12 11 10 23 23 C 1.37997 * 120.00170 * 359.97438 * 22 12 11 24 24 H 1.08002 * 119.99840 * 0.02562 * 1 2 3 25 25 H 1.07992 * 119.99856 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.99591 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47330 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47628 * 299.99859 * 4 3 2 29 29 H 1.09010 * 109.47087 * 60.00249 * 4 3 2 30 30 H 0.96702 * 113.99575 * 300.00239 * 5 3 2 31 31 H 0.96998 * 120.00164 * 5.22071 * 8 6 3 32 32 H 1.08002 * 119.99942 * 359.97438 * 10 9 8 33 33 H 1.07995 * 120.00611 * 180.21578 * 11 10 9 34 34 H 0.97001 * 119.99329 * 180.02562 * 17 16 14 35 35 H 1.08005 * 119.99660 * 179.97438 * 22 12 11 36 36 H 1.08008 * 120.00180 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 8 1.1350 2.3913 -0.0006 6 6 2.9300 1.3849 -1.2305 7 8 3.3002 0.3681 -1.7784 8 7 3.2934 2.5860 -1.7220 9 6 4.0056 2.6637 -2.9246 10 6 4.9468 3.6684 -3.1110 11 6 5.6523 3.7420 -4.2948 12 6 5.4141 2.8177 -5.3040 13 8 6.1045 2.8933 -6.4706 14 6 5.7406 2.0451 -7.4533 15 1 4.8778 1.4083 -7.3249 16 6 6.4738 1.9903 -8.6286 17 7 7.5246 2.7665 -8.7851 18 14 5.9699 0.8147 -9.9899 19 1 4.5930 1.1404 -10.4409 20 1 6.9091 0.9484 -11.1323 21 1 6.0066 -0.5792 -9.4789 22 6 4.4691 1.8163 -5.1198 23 6 3.7674 1.7394 -3.9341 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.4878 2.3303 1.2495 28 1 2.3164 1.3286 2.1392 29 1 3.6515 0.5576 1.2493 30 1 0.5439 2.4029 -0.7659 31 1 3.0616 3.3966 -1.2424 32 1 5.1288 4.3898 -2.3282 33 1 6.3865 4.5209 -4.4383 34 1 8.0374 2.7284 -9.6076 35 1 4.2837 1.0979 -5.9047 36 1 3.0324 0.9611 -3.7910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463541319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:07 Heat of formation + Delta-G solvation = -58.377193 kcal Electronic energy + Delta-G solvation = -20768.182403 eV Core-core repulsion = 17412.199542 eV Total energy + Delta-G solvation = -3355.982861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63833 -38.95862 -37.67337 -36.43891 -34.05574 -33.07655 -32.19815 -30.79024 -30.23037 -27.99865 -25.41309 -24.56802 -22.50398 -21.81442 -20.39796 -19.81406 -18.54885 -17.89509 -17.41191 -16.71542 -16.35859 -15.35719 -15.05424 -14.58436 -14.51560 -14.00568 -13.66108 -13.59752 -13.22553 -12.90056 -12.83750 -12.66810 -12.52787 -12.34062 -11.81938 -11.77879 -11.56105 -11.52873 -11.07934 -10.96683 -10.79380 -10.46411 -9.98051 -9.66467 -9.49387 -9.20845 -8.70547 -8.23804 -6.95345 -6.45747 -4.03391 1.85449 2.03332 2.17060 2.73857 3.14060 3.15050 3.17715 3.23982 3.74383 3.97024 4.36379 4.52826 4.63584 4.80064 5.05336 5.09594 5.23028 5.35281 5.40212 5.64055 5.65015 5.69677 5.76957 6.11176 6.14983 6.25861 6.30899 6.34129 6.69554 6.80223 6.95537 7.02975 7.11294 7.25978 7.41107 7.64985 7.75396 7.98991 8.28229 8.99824 9.68946 10.72083 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031454 B = 0.003632 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.976021 B = 7707.938871 C = 8314.141503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.166 4.166 3 C 0.149 3.851 4 C -0.132 4.132 5 O -0.548 6.548 6 C 0.483 3.517 7 O -0.517 6.517 8 N -0.650 5.650 9 C 0.032 3.968 10 C -0.092 4.092 11 C -0.177 4.177 12 C 0.146 3.854 13 O -0.175 6.175 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.040 3.960 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.219 4.219 23 C -0.064 4.064 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.383 0.617 31 H 0.406 0.594 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.271 0.729 35 H 0.131 0.869 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 -1.251 16.406 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.185 4.185 3 C 0.105 3.895 4 C -0.190 4.190 5 O -0.355 6.355 6 C 0.268 3.732 7 O -0.392 6.392 8 N -0.296 5.296 9 C -0.060 4.060 10 C -0.112 4.112 11 C -0.197 4.197 12 C 0.092 3.908 13 O -0.079 6.079 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.238 4.238 23 C -0.084 4.084 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.232 0.768 31 H 0.242 0.758 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.954 -1.658 16.311 19.718 hybrid contribution -0.637 -0.445 -0.971 1.244 sum -11.591 -2.103 15.340 19.341 Atomic orbital electron populations 1.23846 0.95726 1.02574 0.99524 1.23226 0.96348 0.97991 1.00931 1.20380 0.88512 0.86218 0.94390 1.21694 0.98791 1.03611 0.94861 1.86565 1.50474 1.48428 1.49987 1.21254 0.82029 0.83912 0.85970 1.90743 1.54289 1.34584 1.59621 1.43232 1.54863 1.08686 1.22779 1.17268 1.00131 1.01974 0.86618 1.20357 0.95151 0.98470 0.97206 1.19998 1.04703 1.01722 0.93272 1.19416 0.91195 0.92823 0.87340 1.83987 1.51864 1.54195 1.17810 1.21283 1.12909 1.19510 0.93060 0.89113 1.25289 0.95312 0.97833 0.98041 1.70039 1.16281 1.36496 1.26878 0.85780 0.78587 0.79763 0.79329 1.19468 1.20253 1.19450 1.21081 1.01803 1.02070 0.98892 1.20679 0.98781 0.97621 0.91346 0.87783 0.87691 0.85629 0.91045 0.90498 0.90132 0.76785 0.75812 0.86663 0.85979 0.91938 0.85178 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 13.93 29.01 0.40 -1.09 16 2 C -0.17 -1.68 8.15 -36.03 -0.29 -1.98 16 3 C 0.15 1.55 1.28 -92.93 -0.12 1.43 16 4 C -0.13 -1.18 8.81 37.15 0.33 -0.85 16 5 O -0.55 -4.84 11.32 -35.23 -0.40 -5.24 16 6 C 0.48 6.84 6.42 -10.99 -0.07 6.77 16 7 O -0.52 -9.42 13.97 5.54 0.08 -9.34 16 8 N -0.65 -9.00 5.22 -9.82 -0.05 -9.05 16 9 C 0.03 0.58 6.28 -83.63 -0.52 0.05 16 10 C -0.09 -1.61 9.95 -39.42 -0.39 -2.00 16 11 C -0.18 -3.69 9.99 -39.42 -0.39 -4.08 16 12 C 0.15 3.56 6.65 -39.08 -0.26 3.30 16 13 O -0.18 -5.01 9.75 0.03 0.00 -5.01 16 14 C -0.39 -11.01 9.44 30.88 0.29 -10.72 16 15 H 0.09 2.37 5.29 -52.49 -0.28 2.09 16 16 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 17 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 18 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 C -0.22 -4.95 9.12 -39.42 -0.36 -5.31 16 23 C -0.06 -1.30 8.65 -39.42 -0.34 -1.64 16 24 H 0.10 0.74 6.41 -52.49 -0.34 0.40 16 25 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 26 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.38 2.54 8.05 45.56 0.37 2.91 16 31 H 0.41 4.39 8.34 -40.82 -0.34 4.05 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.13 2.96 5.71 -52.48 -0.30 2.66 16 36 H 0.12 2.34 6.44 -52.48 -0.34 2.00 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -32.98 314.16 -5.05 -38.03 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -3.32 Total: 9.92 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.83 Total: -15.13 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.71 Total: -33.60 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.32 Total: -19.59 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.98 -5.05 -38.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463541319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.343 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds