Wall clock time and date at job start Thu Apr 9 2020 13:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 120.00205 * 2 1 4 4 C 1.52991 * 109.47231 * 119.99442 * 3 2 1 5 5 O 1.42907 * 109.46853 * 359.97438 * 3 2 1 6 6 C 1.50698 * 109.47177 * 240.00091 * 3 2 1 7 7 O 1.21296 * 119.99407 * 334.99744 * 6 3 2 8 8 N 1.34770 * 120.00198 * 154.99613 * 6 3 2 9 9 C 1.39989 * 120.00127 * 185.21050 * 8 6 3 10 10 C 1.38918 * 120.00728 * 213.40083 * 9 8 6 11 11 C 1.38001 * 120.00394 * 179.76421 * 10 9 8 12 12 C 1.38912 * 119.99876 * 0.49232 * 11 10 9 13 13 O 1.35776 * 120.00084 * 179.74310 * 12 11 10 14 14 C 1.34810 * 117.00251 * 185.93845 * 13 12 11 15 15 H 1.08002 * 119.99793 * 5.39999 * 14 13 12 16 16 C 1.38633 * 120.00303 * 185.40794 * 14 13 12 17 17 N 1.31578 * 119.99349 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00326 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47152 * 59.99765 * 18 16 14 20 20 H 1.48495 * 109.47521 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47165 * 299.99995 * 18 16 14 22 22 C 1.38909 * 120.00093 * 359.76799 * 12 11 10 23 23 C 1.37997 * 120.00170 * 359.97438 * 22 12 11 24 24 H 1.08002 * 119.99840 * 0.02562 * 1 2 3 25 25 H 1.07992 * 119.99856 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.99591 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47330 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47628 * 299.99859 * 4 3 2 29 29 H 1.09010 * 109.47087 * 60.00249 * 4 3 2 30 30 H 0.96702 * 113.99575 * 300.00239 * 5 3 2 31 31 H 0.96998 * 120.00164 * 5.22071 * 8 6 3 32 32 H 1.08002 * 119.99942 * 359.97438 * 10 9 8 33 33 H 1.07995 * 120.00611 * 180.21578 * 11 10 9 34 34 H 0.97001 * 119.99329 * 180.02562 * 17 16 14 35 35 H 1.08005 * 119.99660 * 179.97438 * 22 12 11 36 36 H 1.08008 * 120.00180 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 8 1.1350 2.3913 -0.0006 6 6 2.9300 1.3849 -1.2305 7 8 3.3002 0.3681 -1.7784 8 7 3.2934 2.5860 -1.7220 9 6 4.0056 2.6637 -2.9246 10 6 4.9468 3.6684 -3.1110 11 6 5.6523 3.7420 -4.2948 12 6 5.4141 2.8177 -5.3040 13 8 6.1045 2.8933 -6.4706 14 6 5.7406 2.0451 -7.4533 15 1 4.8778 1.4083 -7.3249 16 6 6.4738 1.9903 -8.6286 17 7 7.5246 2.7665 -8.7851 18 14 5.9699 0.8147 -9.9899 19 1 4.5930 1.1404 -10.4409 20 1 6.9091 0.9484 -11.1323 21 1 6.0066 -0.5792 -9.4789 22 6 4.4691 1.8163 -5.1198 23 6 3.7674 1.7394 -3.9341 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.4878 2.3303 1.2495 28 1 2.3164 1.3286 2.1392 29 1 3.6515 0.5576 1.2493 30 1 0.5439 2.4029 -0.7659 31 1 3.0616 3.3966 -1.2424 32 1 5.1288 4.3898 -2.3282 33 1 6.3865 4.5209 -4.4383 34 1 8.0374 2.7284 -9.6076 35 1 4.2837 1.0979 -5.9047 36 1 3.0324 0.9611 -3.7910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463541319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:06 Heat of formation + Delta-G solvation = -83.120290 kcal Electronic energy + Delta-G solvation = -20769.255344 eV Core-core repulsion = 17412.199542 eV Total energy + Delta-G solvation = -3357.055802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.83969 -40.59357 -38.86220 -37.92061 -35.47212 -34.18678 -33.83249 -31.91778 -31.55805 -29.55217 -27.34298 -25.58934 -24.01761 -23.27631 -21.68949 -20.66307 -20.06510 -19.42074 -18.81208 -18.11262 -17.49568 -16.58503 -16.33224 -16.23602 -15.90817 -15.51905 -15.32931 -15.11053 -14.63212 -14.20611 -14.04623 -13.65595 -13.56177 -13.33763 -13.25469 -13.17506 -13.13310 -12.69172 -12.51948 -12.48708 -12.15847 -11.85433 -11.38345 -11.15662 -10.82186 -10.59122 -10.32222 -9.87475 -8.64033 -8.48486 -6.15370 0.45136 0.50239 1.15558 1.34349 1.41389 1.50273 1.51667 2.09956 2.17484 2.79662 3.01637 3.13360 3.47883 3.55655 3.66499 4.03367 4.05075 4.09070 4.37187 4.45313 4.60485 4.69238 4.71291 4.76249 4.99987 5.04933 5.08764 5.12651 5.30257 5.39492 5.53888 5.59428 5.64658 5.66956 5.99910 6.09863 6.31451 6.57978 6.96026 7.11938 7.74997 8.74215 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031454 B = 0.003632 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.976021 B = 7707.938871 C = 8314.141503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.195 4.195 3 C 0.165 3.835 4 C -0.134 4.134 5 O -0.542 6.542 6 C 0.484 3.516 7 O -0.558 6.558 8 N -0.640 5.640 9 C 0.060 3.940 10 C -0.078 4.078 11 C -0.179 4.179 12 C 0.107 3.893 13 O -0.226 6.226 14 C -0.415 4.415 15 H 0.097 0.903 16 C -0.020 4.020 17 N -0.918 5.918 18 Si 1.016 2.984 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.261 1.261 22 C -0.227 4.227 23 C -0.075 4.075 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.394 0.606 31 H 0.427 0.573 32 H 0.166 0.834 33 H 0.130 0.870 34 H 0.274 0.726 35 H 0.118 0.882 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.092 -1.063 18.884 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.214 4.214 3 C 0.121 3.879 4 C -0.191 4.191 5 O -0.350 6.350 6 C 0.271 3.729 7 O -0.436 6.436 8 N -0.287 5.287 9 C -0.034 4.034 10 C -0.098 4.098 11 C -0.198 4.198 12 C 0.056 3.944 13 O -0.133 6.133 14 C -0.492 4.492 15 H 0.115 0.885 16 C -0.217 4.217 17 N -0.555 5.555 18 Si 0.835 3.165 19 H -0.181 1.181 20 H -0.193 1.193 21 H -0.185 1.185 22 C -0.247 4.247 23 C -0.095 4.095 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.245 0.755 31 H 0.266 0.734 32 H 0.183 0.817 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.233 -1.441 18.869 23.092 hybrid contribution -0.154 -0.468 -1.359 1.446 sum -13.387 -1.909 17.509 22.123 Atomic orbital electron populations 1.24103 0.95126 1.03935 0.96558 1.23194 0.97048 0.97446 1.03666 1.20194 0.88272 0.86882 0.92584 1.21757 0.98869 1.03846 0.94670 1.86574 1.50186 1.47631 1.50606 1.22131 0.81310 0.82950 0.86515 1.90737 1.55693 1.36081 1.61079 1.43203 1.54174 1.09945 1.21375 1.17423 0.98740 1.00052 0.87142 1.20782 0.93313 0.98791 0.96869 1.20332 1.05043 1.00971 0.93479 1.19937 0.92201 0.94693 0.87533 1.83946 1.54082 1.55850 1.19384 1.21730 1.13657 1.19847 0.93924 0.88528 1.26539 0.95137 0.99620 1.00452 1.70174 1.18197 1.39151 1.28022 0.84687 0.78770 0.77267 0.75758 1.18107 1.19310 1.18516 1.21081 1.02147 1.01754 0.99710 1.20755 0.98887 0.98655 0.91208 0.86173 0.86575 0.86869 0.90278 0.88891 0.90627 0.75498 0.73406 0.81681 0.85237 0.91728 0.86465 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 13.93 67.77 0.94 -1.22 16 2 C -0.19 -3.49 8.15 25.64 0.21 -3.28 16 3 C 0.17 2.93 1.28 -12.29 -0.02 2.91 16 4 C -0.13 -1.97 8.81 71.98 0.63 -1.34 16 5 O -0.54 -7.32 11.32 -148.98 -1.69 -9.01 16 6 C 0.48 12.46 6.42 87.66 0.56 13.02 16 7 O -0.56 -19.66 13.97 -3.08 -0.04 -19.70 16 8 N -0.64 -15.45 5.22 -303.38 -1.58 -17.04 16 9 C 0.06 1.98 6.28 38.17 0.24 2.22 16 10 C -0.08 -2.50 9.95 22.38 0.22 -2.27 16 11 C -0.18 -7.36 9.99 22.38 0.22 -7.14 16 12 C 0.11 5.40 6.65 22.59 0.15 5.55 16 13 O -0.23 -13.70 9.75 -22.82 -0.22 -13.92 16 14 C -0.42 -24.64 9.44 67.91 0.64 -24.00 16 15 H 0.10 5.34 5.29 -2.91 -0.02 5.32 16 16 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 17 N -0.92 -56.50 13.67 21.61 0.30 -56.21 16 18 Si 1.02 43.53 29.55 68.60 2.03 45.56 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 C -0.23 -10.61 9.12 22.37 0.20 -10.40 16 23 C -0.07 -2.99 8.65 22.38 0.19 -2.79 16 24 H 0.12 1.22 6.41 -2.91 -0.02 1.20 16 25 H 0.12 1.31 8.06 -2.91 -0.02 1.28 16 26 H 0.11 2.30 8.06 -2.91 -0.02 2.27 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.39 3.56 8.05 -74.06 -0.60 2.96 16 31 H 0.43 7.19 8.34 -92.71 -0.77 6.41 16 32 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.13 5.08 8.06 -2.91 -0.02 5.05 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.12 5.65 5.71 -2.91 -0.02 5.63 16 36 H 0.12 4.75 6.44 -2.91 -0.02 4.74 16 Total: -1.00 -76.27 314.16 3.22 -73.05 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: -0.24 Total: 26.66 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 4.67 Total: -29.39 kcal Atomic # 7 Polarization: -71.96 SS G_CDS: -1.29 Total: -73.24 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.95 Total: -42.63 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -76.27 3.22 -73.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463541319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.072 kcal (2) G-P(sol) polarization free energy of solvation -76.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds