Wall clock time and date at job start Thu Apr 9 2020 13:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30479 * 125.84857 * 2 1 4 4 C 1.34218 * 109.82742 * 180.17171 * 3 2 1 5 5 C 1.47709 * 125.63972 * 179.81037 * 4 3 2 6 6 O 1.21608 * 119.99790 * 189.04013 * 5 4 3 7 7 N 1.34777 * 120.00042 * 8.77684 * 5 4 3 8 8 C 1.46492 * 120.00214 * 355.51523 * 7 5 4 9 9 C 1.36869 * 119.99682 * 175.52149 * 7 5 4 10 10 H 1.08001 * 120.00262 * 335.32386 * 9 7 5 11 11 C 1.39041 * 119.99664 * 155.32722 * 9 7 5 12 12 N 1.31370 * 120.00127 * 354.14175 * 11 9 7 13 13 Si 1.86800 * 119.99764 * 174.14354 * 11 9 7 14 14 H 1.48503 * 109.47360 * 59.99895 * 13 11 9 15 15 H 1.48498 * 109.47166 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47102 * 299.99685 * 13 11 9 17 17 N 1.31795 * 108.70817 * 359.55087 * 4 3 2 18 18 N 1.35083 * 125.84608 * 179.68278 * 2 1 3 19 19 C 1.40085 * 126.75494 * 359.97438 * 18 2 1 20 20 N 1.33630 * 125.59458 * 179.97438 * 19 18 2 21 21 C 1.30797 * 109.79110 * 180.02562 * 20 19 18 22 22 N 1.34440 * 108.19940 * 0.02562 * 21 20 19 23 23 H 0.97004 * 126.77438 * 180.02562 * 22 21 20 24 24 N 1.31156 * 125.59672 * 359.67752 * 19 18 2 25 25 H 1.08995 * 109.46908 * 270.32197 * 1 2 3 26 26 H 1.09003 * 109.46677 * 30.31432 * 1 2 3 27 27 H 1.08996 * 109.47503 * 150.31517 * 1 2 3 28 28 H 1.09007 * 109.46922 * 35.98882 * 8 7 5 29 29 H 1.09000 * 109.47436 * 155.98446 * 8 7 5 30 30 H 1.09001 * 109.47539 * 275.99406 * 8 7 5 31 31 H 0.97001 * 119.99237 * 180.02562 * 12 11 9 32 32 H 1.08002 * 125.90235 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2711 1.0576 0.0000 4 6 3.5611 0.6872 -0.0038 5 6 4.7197 1.6035 -0.0090 6 8 5.8412 1.1646 -0.1776 7 7 4.5333 2.9265 0.1679 8 6 3.1758 3.4682 0.2669 9 6 5.6124 3.7640 0.2548 10 1 6.5687 3.3807 0.5786 11 6 5.4772 5.1082 -0.0737 12 7 4.3473 5.5512 -0.5764 13 14 6.9025 6.2843 0.1998 14 1 8.0736 5.8365 -0.5960 15 1 6.5067 7.6500 -0.2286 16 1 7.2606 6.3015 1.6409 17 7 3.6229 -0.6293 0.0035 18 7 2.2980 -1.0950 0.0061 19 6 1.8791 -2.4317 0.0140 20 7 2.6834 -3.4988 0.0194 21 6 1.9672 -4.5932 0.0256 22 7 0.6686 -4.2452 0.0237 23 1 -0.0935 -4.8454 0.0275 24 7 0.6332 -2.8412 0.0228 25 1 -0.3633 0.0058 1.0276 26 1 -0.3633 0.8872 -0.5187 27 1 -0.3634 -0.8927 -0.5089 28 1 2.5394 2.7592 0.7966 29 1 3.2000 4.4120 0.8117 30 1 2.7777 3.6363 -0.7338 31 1 4.2533 6.4890 -0.8059 32 1 2.3524 -5.6022 0.0313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464614172.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:09 Heat of formation + Delta-G solvation = 189.070302 kcal Electronic energy + Delta-G solvation = -20872.793733 eV Core-core repulsion = 17488.586159 eV Total energy + Delta-G solvation = -3384.207574 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.67639 -41.76256 -38.10576 -34.70970 -34.41747 -32.82729 -32.14389 -31.62243 -30.60746 -27.99955 -26.49950 -25.18624 -23.84407 -23.28421 -21.55787 -20.13176 -19.16180 -18.76044 -17.36704 -16.73518 -16.56158 -15.69418 -15.25493 -15.16898 -14.77236 -14.31794 -13.76874 -13.72330 -13.08761 -12.85120 -12.52479 -12.33950 -11.93063 -11.66617 -11.42395 -11.20134 -11.03909 -10.75759 -10.47233 -10.44719 -10.39516 -10.30356 -9.54163 -9.34413 -9.10124 -8.95786 -8.64427 -7.66718 -6.34087 -3.90196 0.80638 1.51295 1.61904 2.53475 2.59784 2.90449 3.24198 3.25849 3.29488 3.77847 4.01738 4.17305 4.29834 4.36312 4.59953 4.94314 5.19221 5.36243 5.47075 5.55448 5.58089 5.72322 5.82814 6.35352 6.45854 6.60755 6.86490 7.02688 7.19502 7.47447 7.54204 7.61745 8.04845 8.23147 8.50888 9.12530 9.34348 9.94515 10.65185 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.043572 B = 0.004115 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.463707 B = 6803.516487 C = 7393.988992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.492 5.492 4 C 0.235 3.765 5 C 0.506 3.494 6 O -0.569 6.569 7 N -0.403 5.403 8 C 0.102 3.898 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.034 3.966 12 N -0.865 5.865 13 Si 0.936 3.064 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.271 1.271 17 N -0.239 5.239 18 N -0.320 5.320 19 C 0.483 3.517 20 N -0.524 5.524 21 C 0.286 3.714 22 N -0.476 5.476 23 H 0.448 0.552 24 N -0.316 5.316 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.271 0.729 32 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 -15.712 1.796 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.018 3.982 3 N -0.221 5.221 4 C -0.048 4.048 5 C 0.290 3.710 6 O -0.452 6.452 7 N -0.120 5.120 8 C -0.041 4.041 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.172 4.172 12 N -0.503 5.503 13 Si 0.761 3.239 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.196 1.196 17 N -0.066 5.066 18 N -0.112 5.112 19 C 0.113 3.887 20 N -0.254 5.254 21 C -0.013 4.013 22 N -0.197 5.197 23 H 0.295 0.705 24 N -0.152 5.152 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -12.989 -15.254 1.656 20.104 hybrid contribution -0.135 -0.214 -0.013 0.254 sum -13.124 -15.468 1.643 20.352 Atomic orbital electron populations 1.20530 0.83051 1.05291 1.04732 1.25086 0.97196 0.81007 0.94912 1.71189 1.01448 1.25815 1.23673 1.25023 0.92484 0.90432 0.96904 1.16224 0.84684 0.82299 0.87758 1.90671 1.22548 1.75903 1.56089 1.43442 1.07901 1.03688 1.56985 1.21999 0.81570 0.98625 1.01876 1.19764 0.91431 0.89129 1.42566 0.87917 1.25506 0.98178 0.98170 0.95321 1.70032 1.24752 1.16344 1.39205 0.85853 0.80591 0.78335 0.79093 1.19492 1.20753 1.19613 1.79001 0.91562 1.11182 1.24864 1.46912 1.06190 1.01011 1.57078 1.19532 0.86770 0.84533 0.97860 1.70374 1.34046 0.96034 1.24929 1.26212 0.80672 1.00027 0.94409 1.47966 1.09283 1.04629 1.57772 0.70517 1.78210 1.16367 0.89281 1.31377 0.88923 0.88079 0.88866 0.92041 0.90575 0.93056 0.91820 0.74959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.87 36.00 0.36 -0.53 16 2 C 0.29 5.18 7.95 -155.40 -1.24 3.94 16 3 N -0.49 -10.44 7.64 -8.57 -0.07 -10.50 16 4 C 0.23 5.80 7.63 -156.48 -1.19 4.61 16 5 C 0.51 14.30 7.63 -12.39 -0.09 14.21 16 6 O -0.57 -17.73 16.83 5.27 0.09 -17.64 16 7 N -0.40 -11.26 3.01 -123.33 -0.37 -11.63 16 8 C 0.10 2.53 7.88 59.84 0.47 3.00 16 9 C -0.30 -8.62 9.23 -15.01 -0.14 -8.75 16 10 H 0.10 3.01 7.47 -52.49 -0.39 2.62 16 11 C 0.03 0.90 5.18 -17.45 -0.09 0.81 16 12 N -0.87 -23.22 10.49 55.50 0.58 -22.64 16 13 Si 0.94 20.75 29.56 -169.99 -5.02 15.73 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 N -0.24 -5.71 12.68 32.02 0.41 -5.30 16 18 N -0.32 -6.18 3.82 -10.96 -0.04 -6.22 16 19 C 0.48 7.70 8.87 -320.54 -2.84 4.86 16 20 N -0.52 -7.69 11.20 -14.87 -0.17 -7.85 16 21 C 0.29 2.18 13.12 -90.67 -1.19 1.00 16 22 N -0.48 -3.22 7.44 29.53 0.22 -3.00 16 23 H 0.45 0.89 8.96 -182.34 -1.63 -0.74 16 24 N -0.32 -3.76 10.53 30.08 0.32 -3.44 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 0.98 6.40 -51.93 -0.33 0.64 16 28 H 0.06 1.40 5.30 -51.92 -0.28 1.12 16 29 H 0.08 1.92 6.47 -51.93 -0.34 1.59 16 30 H 0.05 1.30 7.93 -51.93 -0.41 0.89 16 31 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.23 0.38 8.06 -52.49 -0.42 -0.05 16 LS Contribution 287.08 15.07 4.33 4.33 Total: -1.00 -38.70 287.08 -9.47 -48.17 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -3.79 Total: -3.13 kcal Atomic # 6 Polarization: 29.10 SS G_CDS: -5.96 Total: 23.14 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: 0.88 Total: -70.60 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.09 Total: -17.64 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -38.70 -9.47 -48.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464614172.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.244 kcal (2) G-P(sol) polarization free energy of solvation -38.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds