Wall clock time and date at job start Thu Apr 9 2020 13:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46920 * 138.42288 * 3 2 1 5 5 C 1.52996 * 109.46891 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.20826 * 119.99541 * 0.02562 * 7 6 5 9 9 O 1.34221 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.45198 * 116.99903 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47508 * 329.99753 * 10 9 7 12 12 C 1.50701 * 109.47336 * 209.99870 * 10 9 7 13 13 H 1.08006 * 119.99817 * 359.97438 * 12 10 9 14 14 C 1.37874 * 120.00462 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99633 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00341 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46906 * 60.00442 * 16 14 12 18 18 H 1.48500 * 109.47270 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47589 * 300.00565 * 16 14 12 20 20 C 1.50704 * 109.47348 * 90.00141 * 10 9 7 21 21 C 1.34511 * 125.79131 * 219.71605 * 20 10 9 22 22 C 1.41385 * 106.84245 * 179.88675 * 21 20 10 23 23 C 1.34514 * 106.83765 * 0.37205 * 22 21 20 24 24 O 1.34301 * 108.42535 * 359.77188 * 23 22 21 25 25 H 1.08998 * 109.46938 * 18.41640 * 3 2 1 26 26 H 1.09001 * 109.46519 * 258.41949 * 3 2 1 27 27 H 1.08992 * 109.47056 * 59.99558 * 4 3 2 28 28 H 1.08996 * 109.46698 * 299.99674 * 4 3 2 29 29 H 1.09001 * 109.47372 * 59.99964 * 5 4 3 30 30 H 1.09004 * 109.47108 * 299.99708 * 5 4 3 31 31 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 32 32 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 33 33 H 0.97000 * 119.99970 * 179.97438 * 15 14 12 34 34 H 1.08002 * 126.57992 * 0.02722 * 21 20 10 35 35 H 1.07990 * 126.58111 * 180.16599 * 22 21 20 36 36 H 1.08002 * 125.78946 * 179.74580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1176 1.0800 -0.9573 5 6 4.6475 1.0811 -0.9568 6 6 5.1570 2.1600 -1.9146 7 6 6.6640 2.1615 -1.9137 8 8 7.2685 1.3796 -1.2186 9 8 7.3347 3.0315 -2.6849 10 6 8.7847 2.9758 -2.6340 11 1 9.1010 2.6381 -1.6471 12 6 9.3499 4.3472 -2.9005 13 1 8.6856 5.1775 -3.0897 14 6 10.7148 4.5419 -2.9028 15 7 11.5236 3.5307 -2.6730 16 14 11.4153 6.2416 -3.2339 17 1 10.9194 7.1904 -2.2047 18 1 12.8983 6.1846 -3.1817 19 1 10.9851 6.7011 -4.5789 20 6 9.2875 2.0136 -3.6792 21 6 10.3037 1.1458 -3.5257 22 6 10.4310 0.4439 -4.7464 23 6 9.4903 0.9306 -5.5756 24 8 8.8006 1.8811 -4.9239 25 1 2.9718 -0.9742 -0.3247 26 1 2.9712 0.2071 1.0068 27 1 2.7537 2.0547 -0.6326 28 1 2.7543 0.8735 -1.9640 29 1 5.0117 0.1063 -1.2813 30 1 5.0104 1.2878 0.0501 31 1 4.7928 3.1349 -1.5905 32 1 4.7941 1.9530 -2.9213 33 1 12.4839 3.6675 -2.6750 34 1 10.9054 1.0095 -2.6392 35 1 11.1482 -0.3316 -4.9712 36 1 9.3189 0.6115 -6.5931 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:17 Heat of formation + Delta-G solvation = -83.161290 kcal Electronic energy + Delta-G solvation = -20618.098782 eV Core-core repulsion = 17261.041202 eV Total energy + Delta-G solvation = -3357.057580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.14573 -41.18340 -38.12395 -37.54966 -35.92358 -35.25327 -33.52039 -32.20769 -31.30310 -28.59592 -26.86321 -24.85214 -22.71139 -22.28391 -21.54581 -20.92785 -19.04564 -18.46219 -18.23559 -18.03910 -17.24981 -17.07018 -16.47471 -16.33311 -16.23632 -15.17303 -14.88761 -14.58447 -14.40557 -14.12607 -13.84135 -13.49917 -13.46442 -13.22434 -13.14815 -13.04252 -12.92186 -12.77402 -12.34180 -12.18620 -12.01921 -11.99824 -11.93734 -11.38040 -11.32437 -11.23525 -10.78009 -10.49389 -9.09250 -8.22055 -6.50618 1.12835 1.40349 1.41737 1.45595 1.52152 1.81873 1.90345 1.97303 2.17651 2.44256 2.46276 3.03082 3.16593 3.84723 4.00947 4.14114 4.25248 4.42722 4.47581 4.49218 4.56828 4.66902 4.74391 4.83286 4.91050 4.96581 5.18638 5.20506 5.36074 5.40903 5.46328 5.48958 5.55256 5.71967 5.87866 6.03730 6.50878 6.62477 6.69105 7.00550 7.22388 8.74364 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022005 B = 0.003794 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.146814 B = 7378.700599 C = 8171.520073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.239 3.761 3 C -0.024 4.024 4 C -0.107 4.107 5 C -0.102 4.102 6 C -0.107 4.107 7 C 0.440 3.560 8 O -0.549 6.549 9 O -0.363 6.363 10 C 0.301 3.699 11 H 0.043 0.957 12 C -0.558 4.558 13 H 0.074 0.926 14 C 0.024 3.976 15 N -0.891 5.891 16 Si 0.979 3.021 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.003 4.003 21 C -0.193 4.193 22 C -0.228 4.228 23 C -0.070 4.070 24 O -0.194 6.194 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.270 0.730 34 H 0.121 0.879 35 H 0.165 0.835 36 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 -5.348 0.090 11.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.077 4.077 3 C -0.063 4.063 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.144 4.144 7 C 0.285 3.715 8 O -0.440 6.440 9 O -0.280 6.280 10 C 0.247 3.753 11 H 0.061 0.939 12 C -0.595 4.595 13 H 0.092 0.908 14 C -0.179 4.179 15 N -0.526 5.526 16 Si 0.802 3.198 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.054 4.054 21 C -0.213 4.213 22 C -0.248 4.248 23 C -0.137 4.137 24 O -0.091 6.091 25 H 0.150 0.850 26 H 0.151 0.849 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.182 0.818 36 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -11.241 -5.462 0.202 12.499 hybrid contribution 1.664 0.508 0.018 1.740 sum -9.577 -4.954 0.221 10.785 Atomic orbital electron populations 1.81269 1.15376 1.11173 1.11272 1.29907 0.95846 0.91002 0.90970 1.19574 0.78635 1.03545 1.04575 1.21444 0.93526 0.99262 1.00326 1.21357 0.95091 0.98058 0.99446 1.21584 0.83446 1.04438 1.04932 1.24975 0.94017 0.76882 0.75591 1.90589 1.72034 1.39743 1.41649 1.86538 1.23603 1.55955 1.61862 1.18681 0.72482 0.93386 0.90756 0.93939 1.21153 0.92627 0.92656 1.53049 0.90799 1.25811 0.96471 1.01958 0.93667 1.70153 1.04152 1.32201 1.46071 0.85298 0.77044 0.78304 0.79196 1.18627 1.20326 1.19527 1.23366 0.99013 0.98384 0.84589 1.21281 1.00413 0.99331 1.00277 1.22044 1.03503 1.05063 0.94143 1.24670 0.96164 0.92748 1.00088 1.83963 1.52485 1.48901 1.23792 0.85015 0.84940 0.90000 0.90114 0.91027 0.90762 0.85697 0.86052 0.92078 0.86058 0.81771 0.74442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.06 18.54 20.01 0.37 -11.69 16 2 C 0.24 3.69 15.43 89.44 1.38 5.07 16 3 C -0.02 -0.17 5.70 28.79 0.16 0.00 16 4 C -0.11 -1.00 5.17 30.59 0.16 -0.84 16 5 C -0.10 -1.63 4.50 30.59 0.14 -1.49 16 6 C -0.11 -2.34 5.81 29.85 0.17 -2.17 16 7 C 0.44 16.69 7.92 71.24 0.56 17.26 16 8 O -0.55 -24.08 15.20 21.96 0.33 -23.75 16 9 O -0.36 -16.83 9.85 -49.39 -0.49 -17.32 16 10 C 0.30 16.19 2.42 29.10 0.07 16.26 16 11 H 0.04 2.53 7.15 -2.39 -0.02 2.51 16 12 C -0.56 -31.11 8.89 25.60 0.23 -30.88 16 13 H 0.07 4.02 7.81 -2.91 -0.02 4.00 16 14 C 0.02 1.31 5.30 84.65 0.45 1.76 16 15 N -0.89 -49.77 10.92 21.45 0.23 -49.54 16 16 Si 0.98 42.27 29.54 68.60 2.03 44.30 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 C 0.00 -0.15 5.54 24.83 0.14 -0.02 16 21 C -0.19 -9.63 9.16 22.19 0.20 -9.43 16 22 C -0.23 -9.21 10.91 22.19 0.24 -8.97 16 23 C -0.07 -2.65 12.09 66.97 0.81 -1.84 16 24 O -0.19 -9.22 10.65 -1.37 -0.01 -9.24 16 25 H 0.13 0.49 8.14 -2.39 -0.02 0.48 16 26 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 30 H 0.07 1.27 8.10 -2.38 -0.02 1.25 16 31 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.12 6.39 7.85 -2.91 -0.02 6.37 16 35 H 0.16 5.34 8.06 -2.92 -0.02 5.31 16 36 H 0.24 6.00 8.06 -2.91 -0.02 5.97 16 Total: -1.00 -75.76 327.15 8.27 -67.49 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.09 Total: 15.04 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 4.72 Total: -15.30 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.61 Total: -61.22 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.17 Total: -50.30 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -75.76 8.27 -67.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.673 kcal (2) G-P(sol) polarization free energy of solvation -75.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds