Wall clock time and date at job start Thu Apr 9 2020 13:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38060 * 119.95993 * 2 1 4 4 C 1.38538 * 120.41798 * 180.02562 * 3 2 1 5 5 C 1.37817 * 120.33645 * 0.27387 * 4 3 2 6 6 C 1.39712 * 119.91416 * 359.43289 * 5 4 3 7 7 C 1.47387 * 120.20661 * 180.29893 * 6 5 4 8 8 O 1.21502 * 119.99986 * 185.36849 * 7 6 5 9 9 O 1.34750 * 119.99686 * 5.36338 * 7 6 5 10 10 C 1.38810 * 119.96493 * 179.97438 * 2 1 3 11 11 N 1.39261 * 120.16369 * 359.97438 * 10 2 1 12 12 C 1.34775 * 120.00310 * 56.96412 * 11 10 2 13 13 O 1.21282 * 119.99736 * 354.42633 * 12 11 10 14 14 C 1.50696 * 120.00155 * 174.42843 * 12 11 10 15 15 C 1.53000 * 109.47208 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47208 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00354 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00351 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99669 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00373 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46874 * 90.00508 * 20 18 16 22 22 H 1.48503 * 109.47517 * 209.99986 * 20 18 16 23 23 H 1.48494 * 109.47303 * 330.00611 * 20 18 16 24 24 H 1.09004 * 109.47047 * 82.90371 * 1 2 3 25 25 H 1.09004 * 109.47082 * 202.89928 * 1 2 3 26 26 H 1.08993 * 109.47398 * 322.89860 * 1 2 3 27 27 H 1.08003 * 119.79438 * 359.97199 * 3 2 1 28 28 H 1.08001 * 119.82997 * 180.02562 * 4 3 2 29 29 H 1.07994 * 120.04474 * 179.72661 * 5 4 3 30 30 H 0.96704 * 117.00167 * 179.97438 * 9 7 6 31 31 H 0.97001 * 119.99281 * 236.95611 * 11 10 2 32 32 H 1.08999 * 109.47078 * 299.99832 * 14 12 11 33 33 H 1.09006 * 109.46908 * 59.99709 * 14 12 11 34 34 H 1.08999 * 109.47336 * 300.00129 * 15 14 12 35 35 H 1.09000 * 109.46646 * 60.00394 * 15 14 12 36 36 H 0.96995 * 119.99934 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1961 0.0000 4 6 3.5818 1.2072 -0.0005 5 6 4.2874 0.0233 -0.0068 6 6 3.6039 -1.1952 -0.0006 7 6 4.3520 -2.4650 -0.0005 8 8 3.7573 -3.5205 -0.0936 9 8 5.6955 -2.4554 0.1026 10 6 2.2003 -1.2026 0.0005 11 7 1.5067 -2.4102 0.0016 12 6 0.6189 -2.6783 -0.9763 13 8 0.3490 -1.8296 -1.7996 14 6 -0.0383 -4.0326 -1.0468 15 6 -0.9952 -4.0736 -2.2399 16 6 -1.6529 -5.4276 -2.3100 17 1 -1.4128 -6.1833 -1.5767 18 6 -2.5620 -5.7016 -3.3097 19 7 -2.8548 -4.7813 -4.2025 20 14 -3.3767 -7.3803 -3.3970 21 1 -4.6312 -7.3635 -2.6024 22 1 -3.6913 -7.7050 -4.8116 23 1 -2.4557 -8.4068 -2.8465 24 1 -0.3633 0.1270 -1.0198 25 1 -0.3633 -0.9467 0.3999 26 1 -0.3634 0.8196 0.6199 27 1 1.6525 2.1291 -0.0005 28 1 4.1115 2.1484 -0.0001 29 1 5.3672 0.0375 -0.0116 30 1 6.1423 -3.3131 0.0986 31 1 1.6627 -3.0583 0.7062 32 1 0.7252 -4.8012 -1.1663 33 1 -0.5959 -4.2141 -0.1279 34 1 -1.7587 -3.3050 -2.1200 35 1 -0.4379 -3.8920 -3.1589 36 1 -3.4940 -4.9742 -4.9061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594387990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:54 Heat of formation + Delta-G solvation = -107.085925 kcal Electronic energy + Delta-G solvation = -21142.437794 eV Core-core repulsion = 17784.342764 eV Total energy + Delta-G solvation = -3358.095030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98805 -39.63348 -38.24148 -36.23409 -34.44883 -33.47177 -32.83270 -31.16898 -29.94344 -27.03576 -25.76764 -24.64807 -22.54938 -21.27190 -20.98636 -19.66169 -18.02709 -17.57115 -17.01307 -16.81616 -15.87984 -15.81758 -15.47948 -14.91296 -14.47723 -14.39410 -13.99395 -13.54714 -13.21824 -13.14037 -12.59750 -12.29419 -12.16605 -11.98433 -11.79053 -11.62122 -11.33948 -11.15010 -10.91262 -10.72857 -10.58550 -9.93625 -9.76374 -9.65052 -9.21294 -9.05742 -8.95982 -8.35288 -8.28732 -5.94801 -3.98827 0.53535 1.18169 2.44572 2.86151 3.12185 3.34754 3.38472 3.41496 3.45050 3.65116 4.49105 4.63328 4.76289 4.85127 5.14653 5.16651 5.29837 5.40385 5.59810 5.65970 5.72370 5.88527 5.99516 6.20017 6.22820 6.25367 6.32134 6.35129 6.41557 6.55652 6.89625 6.94683 7.73180 7.76138 7.77020 7.86824 8.07749 8.39671 8.68780 9.09173 9.64624 11.16219 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.004232 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.790842 B = 6614.251629 C = 7460.103306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.086 4.086 3 C -0.072 4.072 4 C -0.143 4.143 5 C -0.059 4.059 6 C -0.149 4.149 7 C 0.526 3.474 8 O -0.502 6.502 9 O -0.515 6.515 10 C 0.216 3.784 11 N -0.682 5.682 12 C 0.515 3.485 13 O -0.516 6.516 14 C -0.127 4.127 15 C 0.038 3.962 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.413 0.587 31 H 0.413 0.587 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.441 11.018 12.568 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.088 4.088 3 C -0.091 4.091 4 C -0.162 4.162 5 C -0.077 4.077 6 C -0.153 4.153 7 C 0.370 3.630 8 O -0.391 6.391 9 O -0.328 6.328 10 C 0.120 3.880 11 N -0.331 5.331 12 C 0.306 3.694 13 O -0.389 6.389 14 C -0.167 4.167 15 C 0.001 3.999 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.272 0.728 31 H 0.251 0.749 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.719 11.666 11.741 22.149 hybrid contribution 0.076 -1.815 0.184 1.826 sum 14.794 9.851 11.925 21.404 Atomic orbital electron populations 1.20862 0.89678 1.02222 1.03681 1.19997 0.97279 0.91348 1.00170 1.21208 0.94220 0.97497 0.96170 1.21072 0.94082 0.98116 1.02916 1.21255 1.00320 0.90709 0.95445 1.19097 0.91776 0.91450 1.12972 1.20732 0.80320 0.89324 0.72634 1.90916 1.69676 1.33113 1.45380 1.84545 1.21374 1.41089 1.85746 1.17461 0.88308 0.87118 0.95090 1.43768 1.42423 1.17323 1.29611 1.21745 0.77254 0.91285 0.79146 1.90675 1.60891 1.48248 1.39136 1.21884 1.00188 0.90713 1.03901 1.18906 0.93019 0.97011 0.90999 1.21217 1.24163 0.98626 1.12442 0.92568 1.25013 0.96763 0.96926 0.95626 1.69998 1.34027 1.33405 1.15472 0.86588 0.79738 0.84417 0.77194 1.20671 1.21232 1.19872 0.89097 0.91752 0.92064 0.85052 0.85111 0.84427 0.72832 0.74903 0.89662 0.90090 0.95764 0.95814 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 8.23 36.01 0.30 -1.24 16 2 C -0.09 -1.19 5.48 -104.48 -0.57 -1.76 16 3 C -0.07 -0.78 9.71 -39.54 -0.38 -1.16 16 4 C -0.14 -1.35 10.02 -39.62 -0.40 -1.75 16 5 C -0.06 -0.61 9.61 -39.18 -0.38 -0.99 16 6 C -0.15 -1.98 5.89 -104.83 -0.62 -2.60 16 7 C 0.53 6.83 8.25 34.45 0.28 7.12 16 8 O -0.50 -7.90 15.29 -19.27 -0.29 -8.20 16 9 O -0.52 -4.73 12.69 -40.63 -0.52 -5.24 16 10 C 0.22 3.24 5.83 -83.48 -0.49 2.76 16 11 N -0.68 -10.96 3.27 -9.68 -0.03 -11.00 16 12 C 0.52 10.26 6.35 -10.99 -0.07 10.19 16 13 O -0.52 -11.86 12.93 5.56 0.07 -11.79 16 14 C -0.13 -2.68 5.64 -27.89 -0.16 -2.84 16 15 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 16 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 24 H 0.09 1.51 7.05 -51.93 -0.37 1.14 16 25 H 0.06 0.99 6.40 -51.93 -0.33 0.66 16 26 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 28 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.14 1.14 7.62 -52.49 -0.40 0.74 16 30 H 0.41 2.01 9.11 45.56 0.42 2.43 16 31 H 0.41 5.84 7.87 -40.82 -0.32 5.52 16 32 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -35.70 313.00 -6.85 -42.55 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -3.50 Total: 4.12 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -3.01 Total: -5.19 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.70 Total: -37.86 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.74 Total: -25.23 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.70 -6.85 -42.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594387990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.539 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds