Wall clock time and date at job start Thu Apr 9 2020 13:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38060 * 119.95993 * 2 1 4 4 C 1.38538 * 120.41798 * 180.02562 * 3 2 1 5 5 C 1.37817 * 120.33645 * 0.27387 * 4 3 2 6 6 C 1.39712 * 119.91416 * 359.43289 * 5 4 3 7 7 C 1.47387 * 120.20661 * 180.29893 * 6 5 4 8 8 O 1.21502 * 119.99986 * 185.36849 * 7 6 5 9 9 O 1.34750 * 119.99686 * 5.36338 * 7 6 5 10 10 C 1.38810 * 119.96493 * 179.97438 * 2 1 3 11 11 N 1.39261 * 120.16369 * 359.97438 * 10 2 1 12 12 C 1.34775 * 120.00310 * 56.96412 * 11 10 2 13 13 O 1.21282 * 119.99736 * 354.42633 * 12 11 10 14 14 C 1.50696 * 120.00155 * 174.42843 * 12 11 10 15 15 C 1.53000 * 109.47208 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47208 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00354 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00351 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99669 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00373 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46874 * 90.00508 * 20 18 16 22 22 H 1.48503 * 109.47517 * 209.99986 * 20 18 16 23 23 H 1.48494 * 109.47303 * 330.00611 * 20 18 16 24 24 H 1.09004 * 109.47047 * 82.90371 * 1 2 3 25 25 H 1.09004 * 109.47082 * 202.89928 * 1 2 3 26 26 H 1.08993 * 109.47398 * 322.89860 * 1 2 3 27 27 H 1.08003 * 119.79438 * 359.97199 * 3 2 1 28 28 H 1.08001 * 119.82997 * 180.02562 * 4 3 2 29 29 H 1.07994 * 120.04474 * 179.72661 * 5 4 3 30 30 H 0.96704 * 117.00167 * 179.97438 * 9 7 6 31 31 H 0.97001 * 119.99281 * 236.95611 * 11 10 2 32 32 H 1.08999 * 109.47078 * 299.99832 * 14 12 11 33 33 H 1.09006 * 109.46908 * 59.99709 * 14 12 11 34 34 H 1.08999 * 109.47336 * 300.00129 * 15 14 12 35 35 H 1.09000 * 109.46646 * 60.00394 * 15 14 12 36 36 H 0.96995 * 119.99934 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1961 0.0000 4 6 3.5818 1.2072 -0.0005 5 6 4.2874 0.0233 -0.0068 6 6 3.6039 -1.1952 -0.0006 7 6 4.3520 -2.4650 -0.0005 8 8 3.7573 -3.5205 -0.0936 9 8 5.6955 -2.4554 0.1026 10 6 2.2003 -1.2026 0.0005 11 7 1.5067 -2.4102 0.0016 12 6 0.6189 -2.6783 -0.9763 13 8 0.3490 -1.8296 -1.7996 14 6 -0.0383 -4.0326 -1.0468 15 6 -0.9952 -4.0736 -2.2399 16 6 -1.6529 -5.4276 -2.3100 17 1 -1.4128 -6.1833 -1.5767 18 6 -2.5620 -5.7016 -3.3097 19 7 -2.8548 -4.7813 -4.2025 20 14 -3.3767 -7.3803 -3.3970 21 1 -4.6312 -7.3635 -2.6024 22 1 -3.6913 -7.7050 -4.8116 23 1 -2.4557 -8.4068 -2.8465 24 1 -0.3633 0.1270 -1.0198 25 1 -0.3633 -0.9467 0.3999 26 1 -0.3634 0.8196 0.6199 27 1 1.6525 2.1291 -0.0005 28 1 4.1115 2.1484 -0.0001 29 1 5.3672 0.0375 -0.0116 30 1 6.1423 -3.3131 0.0986 31 1 1.6627 -3.0583 0.7062 32 1 0.7252 -4.8012 -1.1663 33 1 -0.5959 -4.2141 -0.1279 34 1 -1.7587 -3.3050 -2.1200 35 1 -0.4379 -3.8920 -3.1589 36 1 -3.4940 -4.9742 -4.9061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594387990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:53 Heat of formation + Delta-G solvation = -131.884585 kcal Electronic energy + Delta-G solvation = -21143.513145 eV Core-core repulsion = 17784.342764 eV Total energy + Delta-G solvation = -3359.170381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.09548 -40.79202 -39.40949 -37.16412 -35.80058 -35.51812 -33.85995 -33.06837 -31.14095 -28.29189 -27.50976 -25.70750 -24.17937 -22.46177 -22.15168 -21.14820 -18.95961 -18.90961 -18.62741 -17.83484 -17.62651 -17.03821 -16.59377 -16.48546 -15.89255 -15.75589 -15.13787 -14.81782 -14.57851 -14.22157 -14.20533 -14.04301 -13.36598 -13.25005 -13.02509 -12.82731 -12.76264 -12.55896 -12.51062 -12.32398 -11.94605 -11.77557 -11.67245 -11.33198 -10.98751 -10.74717 -10.57398 -9.91162 -9.41925 -8.19554 -6.33511 -0.40943 0.24765 1.40783 1.43695 1.49741 1.54751 1.58782 2.00773 2.13602 2.42837 2.70346 3.13366 3.70807 3.86134 3.99506 4.05501 4.26450 4.30577 4.40596 4.48297 4.49553 4.68506 4.75240 4.84308 4.99951 5.14025 5.23996 5.35142 5.40347 5.46248 5.50763 5.56265 5.59959 5.82204 5.89934 6.16109 6.38501 6.83442 6.94179 7.20572 7.36436 8.93104 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.004232 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.790842 B = 6614.251629 C = 7460.103306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.108 4.108 3 C -0.068 4.068 4 C -0.128 4.128 5 C -0.051 4.051 6 C -0.165 4.165 7 C 0.528 3.472 8 O -0.540 6.540 9 O -0.500 6.500 10 C 0.177 3.823 11 N -0.664 5.664 12 C 0.518 3.482 13 O -0.557 6.557 14 C -0.117 4.117 15 C 0.047 3.953 16 C -0.546 4.546 17 H 0.072 0.928 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.974 3.026 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.259 1.259 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.160 0.840 28 H 0.174 0.826 29 H 0.166 0.834 30 H 0.433 0.567 31 H 0.420 0.580 32 H 0.094 0.906 33 H 0.105 0.895 34 H -0.010 1.010 35 H -0.019 1.019 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.316 11.453 14.147 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.110 4.110 3 C -0.087 4.087 4 C -0.146 4.146 5 C -0.069 4.069 6 C -0.168 4.168 7 C 0.374 3.626 8 O -0.432 6.432 9 O -0.314 6.314 10 C 0.082 3.918 11 N -0.312 5.312 12 C 0.309 3.691 13 O -0.434 6.434 14 C -0.157 4.157 15 C 0.010 3.990 16 C -0.584 4.584 17 H 0.090 0.910 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.183 1.183 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.177 0.823 28 H 0.191 0.809 29 H 0.184 0.816 30 H 0.295 0.705 31 H 0.260 0.740 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.008 0.992 35 H -0.001 1.001 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.665 12.103 13.377 24.559 hybrid contribution -0.356 -1.809 -0.273 1.863 sum 16.309 10.295 13.104 23.317 Atomic orbital electron populations 1.20741 0.90754 1.02303 1.02105 1.20134 0.96897 0.92380 1.01564 1.21590 0.95233 0.97285 0.94560 1.21573 0.93487 0.99466 1.00047 1.21654 1.01712 0.89861 0.93671 1.19277 0.91130 0.92856 1.13516 1.20782 0.81259 0.88783 0.71761 1.90898 1.70649 1.34291 1.47317 1.84487 1.19399 1.42671 1.84810 1.17765 0.89354 0.86629 0.98035 1.43331 1.41167 1.18255 1.28482 1.21346 0.77865 0.90318 0.79608 1.90659 1.62583 1.49108 1.41016 1.21624 0.99584 0.92248 1.02214 1.18653 0.92837 0.95776 0.91756 1.21681 1.24370 0.99349 1.12956 0.90979 1.26100 0.97416 1.01620 0.94990 1.70169 1.34880 1.36156 1.16344 0.85324 0.78864 0.78727 0.77351 1.19453 1.20979 1.18257 0.92300 0.93807 0.89050 0.82269 0.80907 0.81648 0.70521 0.74015 0.88739 0.87645 0.99174 1.00058 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.02 8.23 71.24 0.59 -2.44 16 2 C -0.11 -2.95 5.48 -19.77 -0.11 -3.05 16 3 C -0.07 -1.29 9.71 22.30 0.22 -1.08 16 4 C -0.13 -1.87 10.02 22.24 0.22 -1.65 16 5 C -0.05 -0.88 9.61 22.53 0.22 -0.67 16 6 C -0.16 -4.13 5.89 -20.00 -0.12 -4.25 16 7 C 0.53 13.12 8.25 70.23 0.58 13.70 16 8 O -0.54 -16.93 15.29 19.83 0.30 -16.63 16 9 O -0.50 -7.91 12.69 -56.60 -0.72 -8.63 16 10 C 0.18 5.31 5.83 38.61 0.22 5.54 16 11 N -0.66 -22.03 3.27 -302.93 -0.99 -23.02 16 12 C 0.52 21.74 6.35 87.66 0.56 22.30 16 13 O -0.56 -27.40 12.93 -3.03 -0.04 -27.44 16 14 C -0.12 -5.13 5.64 29.85 0.17 -4.97 16 15 C 0.05 2.73 4.26 29.85 0.13 2.86 16 16 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 17 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 19 N -0.94 -60.05 13.29 21.45 0.28 -59.77 16 20 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H 0.06 2.10 7.05 -2.38 -0.02 2.09 16 25 H 0.04 1.42 6.40 -2.39 -0.02 1.41 16 26 H 0.09 2.00 8.13 -2.39 -0.02 1.98 16 27 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 29 H 0.17 1.96 7.62 -2.91 -0.02 1.93 16 30 H 0.43 3.16 9.11 -74.05 -0.67 2.49 16 31 H 0.42 12.19 7.87 -92.71 -0.73 11.46 16 32 H 0.09 3.95 8.14 -2.39 -0.02 3.93 16 33 H 0.11 4.05 8.14 -2.38 -0.02 4.03 16 34 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 35 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 36 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -82.17 313.00 3.96 -78.21 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -0.27 Total: 15.31 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 3.37 Total: -5.32 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -0.71 Total: -82.79 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.45 Total: -52.70 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -82.17 3.96 -78.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594387990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.673 kcal (2) G-P(sol) polarization free energy of solvation -82.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds