Wall clock time and date at job start Thu Apr 9 2020 13:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47392 * 2 1 4 4 H 1.09000 * 109.86962 * 58.05446 * 3 2 1 5 5 C 1.54324 * 109.87888 * 297.04126 * 3 2 1 6 6 H 1.09003 * 110.72055 * 336.74772 * 5 3 2 7 7 C 1.52995 * 110.71969 * 100.02466 * 5 3 2 8 8 O 1.42907 * 109.46865 * 179.97438 * 7 5 3 9 9 C 1.55159 * 102.93693 * 218.38764 * 5 3 2 10 10 C 1.54912 * 101.58439 * 35.50445 * 9 5 3 11 11 N 1.47288 * 109.87328 * 179.19079 * 3 2 1 12 12 S 1.65597 * 125.79698 * 298.35800 * 11 3 2 13 13 O 1.42101 * 104.27632 * 31.23650 * 12 11 3 14 14 O 1.42101 * 104.27809 * 159.09180 * 12 11 3 15 15 C 1.81399 * 104.44957 * 275.16455 * 12 11 3 16 16 C 1.50695 * 109.47039 * 179.97438 * 15 12 11 17 17 H 1.07998 * 120.00272 * 0.02562 * 16 15 12 18 18 C 1.37878 * 120.00173 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99589 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00465 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47199 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47390 * 119.99698 * 20 18 16 23 23 H 1.48498 * 109.47303 * 239.99942 * 20 18 16 24 24 H 1.08995 * 109.47132 * 306.07550 * 1 2 3 25 25 H 1.09003 * 109.46762 * 66.07547 * 1 2 3 26 26 H 1.09004 * 109.46927 * 186.07164 * 1 2 3 27 27 H 1.09001 * 109.47280 * 239.99634 * 2 1 3 28 28 H 1.09003 * 109.47068 * 120.00345 * 2 1 3 29 29 H 1.09000 * 109.47313 * 299.97135 * 7 5 3 30 30 H 1.08999 * 109.47179 * 59.97730 * 7 5 3 31 31 H 0.96700 * 113.99418 * 179.97438 * 8 7 5 32 32 H 1.08999 * 111.00409 * 277.42706 * 9 5 3 33 33 H 1.09004 * 111.00133 * 153.58072 * 9 5 3 34 34 H 1.08992 * 110.36977 * 81.82697 * 10 9 5 35 35 H 1.08996 * 110.36476 * 204.04232 * 10 9 5 36 36 H 1.08993 * 109.47185 * 300.00014 * 15 12 11 37 37 H 1.09000 * 109.46783 * 59.99786 * 15 12 11 38 38 H 0.97005 * 120.00151 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6522 1.9726 0.8699 5 6 1.5929 2.1572 -1.2926 6 1 1.3890 1.4341 -2.0823 7 6 0.3672 3.0343 -1.0299 8 8 -0.0231 3.6828 -2.2421 9 6 2.8252 3.0291 -1.6515 10 6 3.9936 2.1141 -1.2072 11 7 3.5127 1.4528 0.0196 12 16 4.4699 0.8272 1.2173 13 8 3.7206 -0.2661 1.7296 14 8 5.7282 0.6228 0.5896 15 6 4.5808 2.1552 2.4481 16 6 5.4367 1.7004 3.6020 17 1 5.8709 0.7115 3.5955 18 6 5.6654 2.5466 4.6662 19 7 5.1363 3.7506 4.6744 20 14 6.7269 1.9832 6.0963 21 1 7.1999 0.5980 5.8461 22 1 7.8966 2.8882 6.2313 23 1 5.9288 2.0158 7.3481 24 1 -0.3633 0.6051 0.8306 25 1 -0.3633 0.4168 -0.9394 26 1 -0.3633 -1.0219 0.1087 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 -0.4532 2.4137 -0.6695 30 1 0.6120 3.7852 -0.2787 31 1 -0.7961 4.2564 -2.1500 32 1 2.8222 3.9612 -1.0865 33 1 2.8671 3.2238 -2.7232 34 1 4.2098 1.3739 -1.9774 35 1 4.8815 2.7093 -0.9942 36 1 5.0266 3.0383 1.9906 37 1 3.5821 2.3987 2.8107 38 1 5.2975 4.3462 5.4230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570060945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:40 Heat of formation + Delta-G solvation = -162.676635 kcal Electronic energy + Delta-G solvation = -20891.376366 eV Core-core repulsion = 17666.314692 eV Total energy + Delta-G solvation = -3225.061673 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35782 -38.04088 -37.30032 -36.84734 -35.43468 -34.25868 -32.37527 -31.05966 -29.26061 -26.50675 -25.55302 -23.44782 -22.66164 -21.30447 -19.82031 -19.14121 -18.19014 -18.01383 -17.53004 -17.12890 -16.42173 -16.17263 -15.67021 -15.17939 -15.01021 -14.73943 -14.46097 -14.12498 -14.05488 -13.80147 -13.47125 -13.28311 -13.09460 -13.03048 -12.81710 -12.77011 -12.69765 -12.57020 -12.26389 -12.01989 -11.79770 -11.75158 -11.56392 -11.33259 -11.17384 -10.81191 -10.68929 -9.84983 -8.43962 -6.62654 -0.49803 1.36014 1.36423 1.51007 1.90790 2.29808 2.89149 3.01130 3.12563 3.37220 3.63704 3.74092 4.05664 4.11093 4.31884 4.41483 4.43617 4.47790 4.57028 4.61984 4.70869 4.73148 4.73979 4.86395 4.89144 5.08098 5.09731 5.16040 5.25044 5.30319 5.34529 5.46951 5.51446 5.61582 5.69289 6.47820 6.98260 7.09328 8.68856 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.005415 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.966457 B = 5169.760184 C = 5366.710927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.159 4.159 3 C 0.152 3.848 4 H 0.074 0.926 5 C -0.085 4.085 6 H 0.097 0.903 7 C 0.085 3.915 8 O -0.585 6.585 9 C -0.112 4.112 10 C 0.111 3.889 11 N -1.016 6.016 12 S 2.631 3.369 13 O -0.988 6.988 14 O -1.002 7.002 15 C -0.431 4.431 16 C -0.568 4.568 17 H 0.063 0.937 18 C 0.026 3.974 19 N -0.907 5.907 20 Si 0.964 3.036 21 H -0.264 1.264 22 H -0.266 1.266 23 H -0.265 1.265 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.397 0.603 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 0.706 -11.745 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.198 4.198 3 C 0.047 3.953 4 H 0.092 0.908 5 C -0.105 4.105 6 H 0.115 0.885 7 C 0.007 3.993 8 O -0.393 6.393 9 C -0.150 4.150 10 C -0.014 4.014 11 N -0.854 5.854 12 S 2.731 3.269 13 O -0.979 6.979 14 O -0.992 6.992 15 C -0.565 4.565 16 C -0.606 4.606 17 H 0.081 0.919 18 C -0.177 4.177 19 N -0.544 5.544 20 Si 0.787 3.213 21 H -0.188 1.188 22 H -0.191 1.191 23 H -0.190 1.190 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.247 0.753 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.674 -0.378 -11.848 15.951 hybrid contribution 0.147 0.780 1.360 1.575 sum -10.527 0.402 -10.487 14.865 Atomic orbital electron populations 1.21770 0.93092 1.02586 1.02664 1.22304 0.98210 0.95893 1.03395 1.21500 0.78083 0.96649 0.99113 0.90815 1.22176 0.94859 0.97319 0.96102 0.88495 1.22189 0.95706 0.94973 0.86428 1.86397 1.53256 1.65855 1.33807 1.22778 0.92094 0.97353 1.02820 1.22170 0.98151 0.95529 0.85510 1.58704 1.16414 1.76296 1.33942 1.04263 0.72036 0.76546 0.74021 1.93403 1.71520 1.51727 1.81239 1.93425 1.44184 1.86216 1.75425 1.27823 1.05282 1.12919 1.10446 1.20772 1.33439 1.01809 1.04617 0.91907 1.25837 0.96409 0.94564 1.00899 1.70033 1.43795 1.07851 1.32728 0.85406 0.78620 0.79168 0.78154 1.18775 1.19072 1.18952 0.92065 0.90870 0.91975 0.91785 0.91098 0.91433 0.93230 0.75267 0.90625 0.88145 0.90924 0.91092 0.90699 0.90445 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.69 71.98 0.63 -2.30 16 2 C -0.16 -4.49 5.24 30.59 0.16 -4.33 16 3 C 0.15 4.31 2.81 45.29 0.13 4.44 16 4 H 0.07 2.07 7.82 -2.39 -0.02 2.05 16 5 C -0.08 -1.85 2.06 -9.61 -0.02 -1.87 16 6 H 0.10 2.01 7.71 -2.39 -0.02 1.99 16 7 C 0.09 1.49 6.14 71.98 0.44 1.93 16 8 O -0.58 -9.56 13.51 -148.98 -2.01 -11.57 16 9 C -0.11 -2.51 6.39 31.99 0.20 -2.30 16 10 C 0.11 3.17 6.83 86.86 0.59 3.77 16 11 N -1.02 -34.84 3.34 -483.68 -1.61 -36.46 16 12 S 2.63 116.77 5.57 -56.49 -0.31 116.46 16 13 O -0.99 -46.82 15.02 -127.65 -1.92 -48.74 16 14 O -1.00 -49.25 17.53 -127.65 -2.24 -51.49 16 15 C -0.43 -21.73 5.93 71.23 0.42 -21.30 16 16 C -0.57 -32.31 9.13 25.60 0.23 -32.08 16 17 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 18 C 0.03 1.46 5.46 84.65 0.46 1.92 16 19 N -0.91 -51.83 13.29 21.45 0.28 -51.54 16 20 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 25 H 0.07 1.20 6.50 -2.39 -0.02 1.19 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.76 8.12 -2.39 -0.02 1.74 16 28 H 0.07 2.50 5.57 -2.39 -0.01 2.49 16 29 H 0.07 0.98 6.21 -2.39 -0.01 0.97 16 30 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.40 2.94 9.12 -74.06 -0.68 2.26 16 32 H 0.08 1.72 8.02 -2.39 -0.02 1.70 16 33 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 3.81 8.14 -2.39 -0.02 3.79 16 37 H 0.08 3.89 8.14 -2.39 -0.02 3.87 16 38 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -71.95 317.95 -2.16 -74.11 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.38 Total: 16.38 kcal Atomic # 6 Polarization: -55.38 SS G_CDS: 3.25 Total: -52.12 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -1.33 Total: -88.00 kcal Atomic # 8 Polarization: -105.63 SS G_CDS: -6.17 Total: -111.80 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 116.77 SS G_CDS: -0.31 Total: 116.46 kcal Total: -71.95 -2.16 -74.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570060945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.571 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds