Wall clock time and date at job start Thu Apr 9 2020 13:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47070 * 2 1 4 4 H 1.09003 * 109.47483 * 55.00072 * 3 2 1 5 5 O 1.45198 * 109.47057 * 294.99737 * 3 2 1 6 6 C 1.34708 * 116.99791 * 90.00195 * 5 3 2 7 7 O 1.21466 * 120.00187 * 0.02562 * 6 5 3 8 8 C 1.47765 * 119.99713 * 180.27433 * 6 5 3 9 9 C 1.39965 * 120.03604 * 359.45187 * 8 6 5 10 10 C 1.38315 * 120.35972 * 179.69199 * 9 8 6 11 11 C 1.37766 * 120.41410 * 0.60488 * 10 9 8 12 12 C 1.40755 * 120.04626 * 359.67660 * 11 10 9 13 13 C 1.41448 * 120.16995 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99880 * 334.92126 * 13 12 11 15 15 C 1.39929 * 119.99795 * 154.92327 * 13 12 11 16 16 N 1.30827 * 120.00464 * 342.58637 * 15 13 12 17 17 Si 1.86803 * 119.99986 * 162.58614 * 15 13 12 18 18 H 1.48497 * 109.47259 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47086 * 119.99834 * 17 15 13 20 20 H 1.48506 * 109.46855 * 239.99789 * 17 15 13 21 21 C 1.39055 * 120.03087 * 179.72167 * 8 6 5 22 22 C 1.50700 * 109.47055 * 174.99722 * 3 2 1 23 23 N 1.34769 * 120.00236 * 300.00057 * 22 3 2 24 24 O 1.21286 * 120.00136 * 120.00062 * 22 3 2 25 25 H 1.09005 * 109.47691 * 299.99756 * 1 2 3 26 26 H 1.09000 * 109.47117 * 60.00257 * 1 2 3 27 27 H 1.09001 * 109.47032 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47196 * 239.99745 * 2 1 3 29 29 H 1.09000 * 109.47117 * 119.99743 * 2 1 3 30 30 H 1.08001 * 119.82036 * 359.97438 * 9 8 6 31 31 H 1.08001 * 119.79634 * 180.29560 * 10 9 8 32 32 H 1.07998 * 119.97301 * 179.69457 * 11 10 9 33 33 H 0.96995 * 120.00312 * 180.02562 * 16 15 13 34 34 H 1.07998 * 120.20083 * 359.97438 * 21 8 6 35 35 H 0.97001 * 120.00387 * 359.97438 * 23 22 3 36 36 H 0.97009 * 120.00536 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6558 2.0916 -1.2407 6 6 0.4685 2.7276 -1.2560 7 8 -0.2268 2.7400 -0.2601 8 6 0.0093 3.4055 -2.4861 9 6 0.8127 3.3970 -3.6322 10 6 0.3867 4.0240 -4.7892 11 6 -0.8272 4.6746 -4.8235 12 6 -1.6464 4.6989 -3.6791 13 6 -2.8934 5.3656 -3.7115 14 1 -3.0575 6.1701 -4.4131 15 6 -3.9144 4.9828 -2.8346 16 7 -3.8599 3.8219 -2.2339 17 14 -5.3555 6.1294 -2.5215 18 1 -5.1811 7.3720 -3.3157 19 1 -6.6181 5.4584 -2.9223 20 1 -5.4126 6.4696 -1.0771 21 6 -1.2189 4.0573 -2.5044 22 6 3.5418 1.4443 0.1239 23 7 4.1296 0.8912 1.2032 24 8 4.2216 1.9435 -0.7477 25 1 -0.3635 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7684 2.8943 -3.6145 31 1 1.0117 4.0077 -5.6698 32 1 -1.1506 5.1660 -5.7292 33 1 -4.5678 3.5564 -1.6264 34 1 -1.8404 4.0700 -1.6214 35 1 3.5860 0.4922 1.9005 36 1 5.0964 0.8926 1.2831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726997757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:24 Heat of formation + Delta-G solvation = -137.055388 kcal Electronic energy + Delta-G solvation = -21255.709822 eV Core-core repulsion = 17896.315218 eV Total energy + Delta-G solvation = -3359.394604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.92815 -40.41919 -39.17048 -37.42608 -35.66995 -35.36775 -33.99907 -32.15874 -31.37691 -28.99030 -27.26264 -25.05239 -23.38169 -22.88106 -21.85370 -21.32987 -19.76007 -19.02068 -18.32428 -17.67227 -17.54209 -17.17884 -16.61851 -16.41362 -15.80520 -15.43063 -15.29638 -15.06727 -14.73658 -14.36926 -14.14314 -13.61904 -13.38553 -13.29470 -13.04762 -13.00111 -12.81735 -12.59263 -12.22430 -12.06862 -12.00248 -11.67731 -11.55113 -11.31423 -11.09984 -10.95726 -10.79550 -9.63264 -9.46020 -8.68714 -6.40320 0.11124 0.94826 1.34924 1.38769 1.40836 1.45657 1.54953 1.78130 2.19939 2.50608 2.71934 3.58606 3.62324 3.65157 3.84366 3.88378 4.23542 4.36140 4.40582 4.60894 4.68230 4.79151 4.87931 4.98418 5.04415 5.10708 5.20535 5.27245 5.32705 5.43356 5.78509 5.80476 5.88260 5.99639 6.20687 6.26952 6.51773 6.78638 6.85878 6.87370 7.18732 8.29341 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024090 B = 0.004730 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.047788 B = 5918.265708 C = 6651.629346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.055 3.945 4 H 0.114 0.886 5 O -0.335 6.335 6 C 0.519 3.481 7 O -0.527 6.527 8 C -0.129 4.129 9 C -0.187 4.187 10 C -0.099 4.099 11 C -0.204 4.204 12 C 0.067 3.933 13 C -0.493 4.493 14 H 0.087 0.913 15 C 0.032 3.968 16 N -0.825 5.825 17 Si 0.984 3.016 18 H -0.253 1.253 19 H -0.264 1.264 20 H -0.269 1.269 21 C -0.118 4.118 22 C 0.527 3.473 23 N -0.817 5.817 24 O -0.572 6.572 25 H 0.059 0.941 26 H 0.017 0.983 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.289 0.711 34 H 0.111 0.889 35 H 0.422 0.578 36 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.739 -7.829 8.182 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.003 4.003 4 H 0.132 0.868 5 O -0.251 6.251 6 C 0.366 3.634 7 O -0.418 6.418 8 C -0.130 4.130 9 C -0.206 4.206 10 C -0.117 4.117 11 C -0.223 4.223 12 C 0.065 3.935 13 C -0.522 4.522 14 H 0.105 0.895 15 C -0.183 4.183 16 N -0.450 5.450 17 Si 0.804 3.196 18 H -0.176 1.176 19 H -0.189 1.189 20 H -0.194 1.194 21 C -0.138 4.138 22 C 0.310 3.690 23 N -0.385 5.385 24 O -0.450 6.450 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.254 0.746 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.706 -7.657 8.009 14.091 hybrid contribution -0.699 0.231 0.596 0.947 sum 8.007 -7.426 8.605 13.904 Atomic orbital electron populations 1.21807 0.95207 1.02504 1.01270 1.21976 0.96600 0.91760 1.05744 1.22913 0.92900 0.96998 0.87525 0.86826 1.86686 1.36567 1.63807 1.38054 1.21555 0.78431 0.74931 0.88478 1.90723 1.55505 1.59562 1.36020 1.19077 0.97337 1.04384 0.92204 1.20925 1.00140 1.06383 0.93181 1.20932 0.96001 0.97240 0.97521 1.21501 0.97210 1.06101 0.97537 1.17907 0.93702 0.91269 0.90624 1.19882 0.96686 1.17126 1.18542 0.89486 1.26835 1.02514 0.95860 0.93083 1.69863 1.33691 1.19121 1.22341 0.85130 0.76521 0.78943 0.78984 1.17571 1.18865 1.19372 1.21458 0.93402 0.99947 0.98958 1.20110 0.88996 0.77457 0.82423 1.43401 1.12416 1.60665 1.22036 1.90781 1.65903 1.46410 1.41893 0.92164 0.96419 0.89979 0.90389 0.85129 0.86072 0.84474 0.86566 0.90055 0.87142 0.74597 0.74813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 8.56 71.98 0.62 -3.54 16 2 C -0.12 -2.68 5.59 30.59 0.17 -2.51 16 3 C 0.06 1.57 2.68 29.85 0.08 1.65 16 4 H 0.11 3.16 7.16 -2.39 -0.02 3.14 16 5 O -0.34 -13.32 8.59 -49.79 -0.43 -13.75 16 6 C 0.52 23.76 6.35 70.34 0.45 24.21 16 7 O -0.53 -24.97 13.52 19.95 0.27 -24.70 16 8 C -0.13 -6.47 5.87 -20.14 -0.12 -6.58 16 9 C -0.19 -8.52 9.62 22.71 0.22 -8.31 16 10 C -0.10 -4.27 10.01 22.18 0.22 -4.05 16 11 C -0.20 -9.71 9.78 22.77 0.22 -9.49 16 12 C 0.07 3.64 5.57 -21.32 -0.12 3.52 16 13 C -0.49 -26.34 9.05 23.47 0.21 -26.13 16 14 H 0.09 4.38 7.90 -2.91 -0.02 4.36 16 15 C 0.03 1.64 5.14 85.25 0.44 2.08 16 16 N -0.82 -44.35 10.97 21.82 0.24 -44.12 16 17 Si 0.98 38.38 29.59 68.60 2.03 40.41 16 18 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 21 C -0.12 -6.52 8.23 23.02 0.19 -6.33 16 22 C 0.53 13.66 7.51 87.66 0.66 14.32 16 23 N -0.82 -10.46 8.73 -173.54 -1.52 -11.97 16 24 O -0.57 -20.91 17.34 15.75 0.27 -20.64 16 25 H 0.06 1.70 7.79 -2.38 -0.02 1.68 16 26 H 0.02 0.62 6.06 -2.39 -0.01 0.61 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.13 1.49 7.43 -2.39 -0.02 1.48 16 30 H 0.12 5.11 7.59 -2.91 -0.02 5.09 16 31 H 0.14 4.78 8.06 -2.91 -0.02 4.75 16 32 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 33 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 34 H 0.11 6.57 5.77 -2.91 -0.02 6.56 16 35 H 0.42 2.28 8.19 -92.71 -0.76 1.52 16 36 H 0.42 4.08 8.93 -92.70 -0.83 3.25 16 Total: -1.00 -72.66 311.54 3.66 -69.01 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.45 Total: 26.91 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 3.24 Total: -21.16 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -1.28 Total: -56.09 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: 0.11 Total: -59.08 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -72.66 3.66 -69.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726997757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.048 kcal (2) G-P(sol) polarization free energy of solvation -72.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds