Wall clock time and date at job start Thu Apr 9 2020 13:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47565 * 2 1 4 4 C 1.52994 * 109.47500 * 120.00350 * 2 1 3 5 5 N 1.46500 * 109.47237 * 176.97057 * 4 2 1 6 6 C 1.46502 * 120.00217 * 295.78631 * 5 4 2 7 7 C 1.50702 * 109.46880 * 275.29698 * 6 5 4 8 8 H 1.07997 * 120.00508 * 4.97901 * 7 6 5 9 9 C 1.37879 * 119.99487 * 184.97794 * 7 6 5 10 10 N 1.31516 * 120.00392 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 119.99809 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47035 * 89.99481 * 11 9 7 13 13 H 1.48490 * 109.46953 * 209.99603 * 11 9 7 14 14 H 1.48504 * 109.46750 * 329.99753 * 11 9 7 15 15 S 1.65606 * 119.99730 * 115.51065 * 5 4 2 16 16 O 1.42102 * 104.27286 * 26.34953 * 15 5 4 17 17 O 1.42102 * 104.27690 * 154.20186 * 15 5 4 18 18 C 1.81398 * 104.44764 * 270.27750 * 15 5 4 19 19 C 1.54033 * 113.81335 * 283.50535 * 18 15 5 20 20 O 1.44451 * 85.42512 * 223.24076 * 19 18 15 21 21 C 1.44169 * 93.37899 * 24.08925 * 20 19 18 22 22 H 1.09006 * 109.46674 * 299.99536 * 1 2 3 23 23 H 1.09003 * 109.47342 * 59.99426 * 1 2 3 24 24 H 1.08994 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46674 * 240.00464 * 2 1 3 26 26 H 1.08996 * 109.47063 * 306.19958 * 3 2 1 27 27 H 1.09009 * 109.46296 * 66.19227 * 3 2 1 28 28 H 1.08991 * 109.47539 * 186.19301 * 3 2 1 29 29 H 1.09002 * 109.46936 * 56.97428 * 4 2 1 30 30 H 1.08996 * 109.47257 * 296.97452 * 4 2 1 31 31 H 1.08998 * 109.47125 * 35.29843 * 6 5 4 32 32 H 1.09005 * 109.46610 * 155.30064 * 6 5 4 33 33 H 0.96999 * 119.99717 * 180.02562 * 10 9 7 34 34 H 1.08994 * 113.00361 * 55.33317 * 18 15 5 35 35 H 1.08997 * 113.87099 * 337.34357 * 19 18 15 36 36 H 1.08998 * 113.86773 * 109.05497 * 19 18 15 37 37 H 1.09000 * 113.86823 * 221.76946 * 21 20 19 38 38 H 1.09001 * 113.98775 * 90.07547 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5032 -0.7848 1.2131 6 6 4.1777 -1.5470 0.1594 7 6 4.2625 -2.9963 0.5636 8 1 3.7849 -3.3324 1.4721 9 6 4.9498 -3.8932 -0.2264 10 7 5.5310 -3.4841 -1.3330 11 14 5.0544 -5.6899 0.2743 12 1 3.9092 -6.4338 -0.3093 13 1 6.3271 -6.2695 -0.2248 14 1 5.0097 -5.7945 1.7549 15 16 4.3949 0.0107 2.3597 16 8 3.5312 0.0856 3.4855 17 8 5.6155 -0.7145 2.4197 18 6 4.6684 1.6602 1.6562 19 6 5.7463 1.6965 0.5565 20 8 6.2047 2.9020 1.2070 21 6 5.6334 2.5350 2.4787 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8932 -0.5138 -0.8901 26 1 1.5890 1.9874 -0.8293 27 1 1.7700 1.9233 0.9403 28 1 3.1244 1.4445 -0.1109 29 1 1.6331 -1.7321 1.2766 30 1 1.7217 -0.1772 2.1383 31 1 3.6132 -1.4612 -0.7691 32 1 5.1827 -1.1516 0.0116 33 1 6.0143 -4.1152 -1.8889 34 1 3.7423 2.1650 1.3816 35 1 6.4562 0.8709 0.6072 36 1 5.3489 1.8583 -0.4454 37 1 5.1464 3.3603 2.9981 38 1 6.3070 1.9660 3.1195 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755107295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:32 Heat of formation + Delta-G solvation = -82.325516 kcal Electronic energy + Delta-G solvation = -21439.838074 eV Core-core repulsion = 18218.260687 eV Total energy + Delta-G solvation = -3221.577387 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15619 -37.28671 -36.58247 -35.40624 -33.75746 -32.12024 -30.15823 -27.48444 -27.13550 -26.63157 -25.00541 -22.67095 -21.28356 -19.82230 -18.35442 -17.46465 -17.02230 -16.61322 -16.24522 -15.77332 -15.44188 -14.65298 -14.48535 -14.09915 -13.92312 -13.65363 -12.94689 -12.54990 -12.38407 -12.32829 -12.21108 -11.96936 -11.74870 -11.64468 -11.51431 -11.28138 -11.13832 -11.09873 -10.73629 -10.68006 -10.57807 -10.32465 -10.08569 -9.88303 -9.81866 -9.65333 -8.44481 -8.02362 -6.07275 -4.09948 0.69222 3.08951 3.31221 3.37966 3.43922 3.45664 3.77060 4.34546 4.44729 4.62985 4.87136 5.06478 5.08766 5.16685 5.20276 5.24051 5.28662 5.40345 5.63964 5.64638 5.71492 5.86442 5.89713 5.94402 5.95250 6.00388 6.20156 6.23084 6.38935 6.53208 6.68725 7.17403 7.33226 7.57351 7.90757 8.19942 8.91983 9.54904 11.01300 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.007895 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.092239 B = 3545.498796 C = 4331.679119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.160 4.160 4 C 0.128 3.872 5 N -0.977 5.977 6 C 0.256 3.744 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.273 1.273 15 S 2.601 3.399 16 O -0.970 6.970 17 O -0.929 6.929 18 C -0.706 4.706 19 C 0.077 3.923 20 O -0.369 6.369 21 C 0.072 3.928 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.263 0.737 34 H 0.165 0.835 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 11.258 2.578 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.217 4.217 4 C 0.002 3.998 5 N -0.816 5.816 6 C 0.134 3.866 7 C -0.563 4.563 8 H 0.079 0.921 9 C -0.140 4.140 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 S 2.691 3.309 16 O -0.960 6.960 17 O -0.919 6.919 18 C -0.811 4.811 19 C 0.000 4.000 20 O -0.288 6.288 21 C -0.007 4.007 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.182 0.818 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.142 11.094 3.143 12.626 hybrid contribution -0.204 -0.697 -0.345 0.804 sum -5.346 10.397 2.798 12.021 Atomic orbital electron populations 1.21763 0.95163 1.01905 1.01280 1.21529 0.95370 0.96035 1.00779 1.22149 1.01582 0.96662 1.01312 1.21265 0.80093 1.01588 0.96858 1.57403 1.13979 1.62199 1.48025 1.19093 0.91935 0.90583 0.84982 1.21447 1.33431 0.93018 1.08396 0.92130 1.24908 0.95020 0.99093 0.94933 1.69903 1.34950 1.35129 1.13556 0.86536 0.77409 0.84692 0.79052 1.20686 1.21109 1.19751 1.05391 0.74787 0.75956 0.74813 1.93515 1.66313 1.87179 1.49008 1.93652 1.46101 1.66323 1.85789 1.34153 1.09585 1.27379 1.10017 1.23691 0.91403 0.88708 0.96219 1.89706 1.79935 1.37796 1.21355 1.23463 0.91489 0.97514 0.88220 0.92937 0.92886 0.92377 0.89609 0.92501 0.93072 0.92113 0.90381 0.90400 0.94609 0.94195 0.92723 0.81776 0.87644 0.87549 0.87707 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 2 C -0.12 -1.62 2.91 -90.62 -0.26 -1.88 16 3 C -0.16 -1.93 7.73 37.16 0.29 -1.64 16 4 C 0.13 2.12 5.21 -4.04 -0.02 2.10 16 5 N -0.98 -18.94 2.29 -115.66 -0.27 -19.21 16 6 C 0.26 5.96 4.91 -5.19 -0.03 5.94 16 7 C -0.52 -14.20 9.38 -34.44 -0.32 -14.52 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.90 -25.39 13.29 55.43 0.74 -24.65 16 11 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 S 2.60 48.40 5.30 -107.50 -0.57 47.83 16 16 O -0.97 -19.26 16.54 -57.54 -0.95 -20.21 16 17 O -0.93 -20.95 16.34 -57.54 -0.94 -21.89 16 18 C -0.71 -9.93 3.52 -25.65 -0.09 -10.02 16 19 C 0.08 1.12 8.57 37.64 0.32 1.44 16 20 O -0.37 -5.50 12.46 -35.23 -0.44 -5.94 16 21 C 0.07 0.92 8.82 37.64 0.33 1.25 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.09 1.33 6.73 -51.93 -0.35 0.98 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.56 7.62 -51.92 -0.40 0.16 16 28 H 0.06 0.76 4.99 -51.93 -0.26 0.50 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.20 6.81 -51.93 -0.35 0.84 16 31 H 0.04 0.84 6.61 -51.93 -0.34 0.49 16 32 H 0.04 0.98 7.59 -51.93 -0.39 0.58 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.16 1.97 5.14 -51.93 -0.27 1.70 16 35 H 0.11 1.65 7.57 -51.93 -0.39 1.26 16 36 H 0.11 1.34 7.85 -51.93 -0.41 0.94 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -32.33 316.77 -7.88 -40.21 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.66 Total: -0.49 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 0.46 Total: -16.99 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.47 Total: -43.86 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -2.33 Total: -48.04 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 48.40 SS G_CDS: -0.57 Total: 47.83 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.33 -7.88 -40.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755107295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.117 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds