Wall clock time and date at job start Thu Apr 9 2020 13:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47565 * 2 1 4 4 C 1.52994 * 109.47500 * 120.00350 * 2 1 3 5 5 N 1.46500 * 109.47237 * 176.97057 * 4 2 1 6 6 C 1.46502 * 120.00217 * 295.78631 * 5 4 2 7 7 C 1.50702 * 109.46880 * 275.29698 * 6 5 4 8 8 H 1.07997 * 120.00508 * 4.97901 * 7 6 5 9 9 C 1.37879 * 119.99487 * 184.97794 * 7 6 5 10 10 N 1.31516 * 120.00392 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 119.99809 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47035 * 89.99481 * 11 9 7 13 13 H 1.48490 * 109.46953 * 209.99603 * 11 9 7 14 14 H 1.48504 * 109.46750 * 329.99753 * 11 9 7 15 15 S 1.65606 * 119.99730 * 115.51065 * 5 4 2 16 16 O 1.42102 * 104.27286 * 26.34953 * 15 5 4 17 17 O 1.42102 * 104.27690 * 154.20186 * 15 5 4 18 18 C 1.81398 * 104.44764 * 270.27750 * 15 5 4 19 19 C 1.54033 * 113.81335 * 283.50535 * 18 15 5 20 20 O 1.44451 * 85.42512 * 223.24076 * 19 18 15 21 21 C 1.44169 * 93.37899 * 24.08925 * 20 19 18 22 22 H 1.09006 * 109.46674 * 299.99536 * 1 2 3 23 23 H 1.09003 * 109.47342 * 59.99426 * 1 2 3 24 24 H 1.08994 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46674 * 240.00464 * 2 1 3 26 26 H 1.08996 * 109.47063 * 306.19958 * 3 2 1 27 27 H 1.09009 * 109.46296 * 66.19227 * 3 2 1 28 28 H 1.08991 * 109.47539 * 186.19301 * 3 2 1 29 29 H 1.09002 * 109.46936 * 56.97428 * 4 2 1 30 30 H 1.08996 * 109.47257 * 296.97452 * 4 2 1 31 31 H 1.08998 * 109.47125 * 35.29843 * 6 5 4 32 32 H 1.09005 * 109.46610 * 155.30064 * 6 5 4 33 33 H 0.96999 * 119.99717 * 180.02562 * 10 9 7 34 34 H 1.08994 * 113.00361 * 55.33317 * 18 15 5 35 35 H 1.08997 * 113.87099 * 337.34357 * 19 18 15 36 36 H 1.08998 * 113.86773 * 109.05497 * 19 18 15 37 37 H 1.09000 * 113.86823 * 221.76946 * 21 20 19 38 38 H 1.09001 * 113.98775 * 90.07547 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5032 -0.7848 1.2131 6 6 4.1777 -1.5470 0.1594 7 6 4.2625 -2.9963 0.5636 8 1 3.7849 -3.3324 1.4721 9 6 4.9498 -3.8932 -0.2264 10 7 5.5310 -3.4841 -1.3330 11 14 5.0544 -5.6899 0.2743 12 1 3.9092 -6.4338 -0.3093 13 1 6.3271 -6.2695 -0.2248 14 1 5.0097 -5.7945 1.7549 15 16 4.3949 0.0107 2.3597 16 8 3.5312 0.0856 3.4855 17 8 5.6155 -0.7145 2.4197 18 6 4.6684 1.6602 1.6562 19 6 5.7463 1.6965 0.5565 20 8 6.2047 2.9020 1.2070 21 6 5.6334 2.5350 2.4787 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8932 -0.5138 -0.8901 26 1 1.5890 1.9874 -0.8293 27 1 1.7700 1.9233 0.9403 28 1 3.1244 1.4445 -0.1109 29 1 1.6331 -1.7321 1.2766 30 1 1.7217 -0.1772 2.1383 31 1 3.6132 -1.4612 -0.7691 32 1 5.1827 -1.1516 0.0116 33 1 6.0143 -4.1152 -1.8889 34 1 3.7423 2.1650 1.3816 35 1 6.4562 0.8709 0.6072 36 1 5.3489 1.8583 -0.4454 37 1 5.1464 3.3603 2.9981 38 1 6.3070 1.9660 3.1195 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755107295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:32 Heat of formation + Delta-G solvation = -106.006989 kcal Electronic energy + Delta-G solvation = -21440.864980 eV Core-core repulsion = 18218.260687 eV Total energy + Delta-G solvation = -3222.604293 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30548 -38.62980 -38.16174 -36.99486 -35.38051 -33.90129 -31.34817 -29.29324 -28.11616 -27.68446 -26.49651 -24.44922 -22.52539 -21.02097 -19.78904 -18.93365 -18.57808 -18.13564 -17.72084 -17.14908 -16.83499 -16.33879 -15.80667 -15.45021 -15.23771 -14.98194 -14.33942 -14.06040 -13.81366 -13.62118 -13.49290 -13.28903 -13.16764 -13.03822 -12.91459 -12.86279 -12.68544 -12.49839 -12.30080 -12.28935 -12.02101 -11.70643 -11.56496 -11.47279 -11.18657 -10.93231 -10.53689 -9.63636 -8.17344 -6.26519 -0.76913 1.37878 1.40460 1.50078 1.65892 2.31625 2.41816 2.50542 2.94971 3.13910 3.30171 3.76269 3.89194 3.93958 4.08618 4.10644 4.18353 4.39685 4.41074 4.57075 4.73364 4.78414 4.81709 4.82152 4.86494 5.01785 5.08800 5.13620 5.24779 5.35283 5.40351 5.49885 5.62972 5.76206 5.98493 6.17517 6.80435 7.41032 8.89555 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.007895 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.092239 B = 3545.498796 C = 4331.679119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C -0.163 4.163 4 C 0.121 3.879 5 N -0.985 5.985 6 C 0.273 3.727 7 C -0.543 4.543 8 H 0.046 0.954 9 C 0.015 3.985 10 N -0.921 5.921 11 Si 0.948 3.052 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.278 1.278 15 S 2.597 3.403 16 O -0.987 6.987 17 O -0.979 6.979 18 C -0.673 4.673 19 C 0.071 3.929 20 O -0.377 6.377 21 C 0.066 3.934 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.034 0.966 32 H 0.025 0.975 33 H 0.266 0.734 34 H 0.195 0.805 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 13.086 2.614 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.220 4.220 4 C -0.004 4.004 5 N -0.822 5.822 6 C 0.149 3.851 7 C -0.582 4.582 8 H 0.065 0.935 9 C -0.185 4.185 10 N -0.561 5.561 11 Si 0.774 3.226 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.203 1.203 15 S 2.693 3.307 16 O -0.978 6.978 17 O -0.970 6.970 18 C -0.784 4.784 19 C -0.007 4.007 20 O -0.295 6.295 21 C -0.012 4.012 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.212 0.788 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.217 12.869 3.205 14.647 hybrid contribution 0.117 -1.172 -0.310 1.218 sum -6.100 11.697 2.895 13.506 Atomic orbital electron populations 1.21743 0.93139 1.02046 1.02794 1.21453 0.97000 0.96813 0.98021 1.22182 1.01287 0.95388 1.03109 1.21476 0.78499 1.01352 0.99092 1.57213 1.15167 1.63108 1.46742 1.18630 0.91464 0.89156 0.85818 1.21806 1.33205 0.95367 1.07829 0.93537 1.25626 0.94945 1.02797 0.95092 1.69977 1.35567 1.36291 1.14269 0.85706 0.77971 0.80625 0.78299 1.19266 1.20471 1.20323 1.05201 0.73494 0.77495 0.74537 1.93483 1.66336 1.88016 1.49954 1.93591 1.47796 1.69121 1.86477 1.33944 1.11304 1.23002 1.10102 1.23775 0.91081 0.88373 0.97447 1.89717 1.80168 1.37448 1.22197 1.23888 0.90914 0.98486 0.87877 0.91479 0.91257 0.93031 0.91896 0.90563 0.91364 0.92745 0.92288 0.88988 0.94851 0.95707 0.92517 0.78817 0.89503 0.85368 0.83679 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.19 71.98 0.66 -2.23 16 2 C -0.11 -2.97 2.91 -10.79 -0.03 -3.00 16 3 C -0.16 -3.44 7.73 71.98 0.56 -2.88 16 4 C 0.12 3.98 5.21 86.38 0.45 4.43 16 5 N -0.98 -38.58 2.29 -519.85 -1.19 -39.77 16 6 C 0.27 13.09 4.91 85.63 0.42 13.51 16 7 C -0.54 -30.32 9.38 25.60 0.24 -30.08 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.01 0.84 5.46 84.65 0.46 1.30 16 10 N -0.92 -53.03 13.29 21.45 0.28 -52.74 16 11 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 15 S 2.60 96.34 5.30 -56.49 -0.30 96.04 16 16 O -0.99 -38.65 16.54 -127.65 -2.11 -40.76 16 17 O -0.98 -45.58 16.34 -127.65 -2.09 -47.66 16 18 C -0.67 -17.37 3.52 31.29 0.11 -17.26 16 19 C 0.07 1.94 8.57 72.29 0.62 2.56 16 20 O -0.38 -10.19 12.46 -148.98 -1.86 -12.05 16 21 C 0.07 1.51 8.82 72.30 0.64 2.14 16 22 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.94 6.73 -2.38 -0.02 1.93 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.21 7.62 -2.38 -0.02 1.19 16 28 H 0.05 1.21 4.99 -2.39 -0.01 1.19 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 2.73 6.81 -2.39 -0.02 2.71 16 31 H 0.03 1.61 6.61 -2.39 -0.02 1.59 16 32 H 0.02 1.27 7.59 -2.38 -0.02 1.25 16 33 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.19 3.88 5.14 -2.39 -0.01 3.87 16 35 H 0.09 2.75 7.57 -2.39 -0.02 2.73 16 36 H 0.13 2.97 7.85 -2.39 -0.02 2.95 16 37 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.09 2.03 8.10 -2.39 -0.02 2.01 16 Total: -1.00 -70.69 316.77 -0.06 -70.75 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.05 Total: 10.87 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 4.13 Total: -31.51 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -0.91 Total: -92.51 kcal Atomic # 8 Polarization: -94.41 SS G_CDS: -6.05 Total: -100.47 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 96.34 SS G_CDS: -0.30 Total: 96.04 kcal Total: -70.69 -0.06 -70.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755107295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.259 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds