Wall clock time and date at job start Thu Apr 9 2020 13:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47476 * 2 1 4 4 H 1.09001 * 109.47050 * 305.00004 * 3 2 1 5 5 O 1.45201 * 109.47141 * 64.99737 * 3 2 1 6 6 C 1.34770 * 117.00453 * 270.00296 * 5 3 2 7 7 O 1.21510 * 119.99735 * 0.02562 * 6 5 3 8 8 C 1.47506 * 120.00349 * 180.02562 * 6 5 3 9 9 C 1.40064 * 119.90295 * 180.02562 * 8 6 5 10 10 C 1.36296 * 120.10482 * 180.27495 * 9 8 6 11 11 C 1.40898 * 119.89315 * 359.47712 * 10 9 8 12 12 C 1.41097 * 120.10096 * 180.25697 * 11 10 9 13 13 H 1.07995 * 120.00535 * 204.79187 * 12 11 10 14 14 C 1.40253 * 119.99622 * 24.78642 * 12 11 10 15 15 N 1.30635 * 119.99755 * 17.74572 * 14 12 11 16 16 Si 1.86802 * 119.99899 * 197.74177 * 14 12 11 17 17 H 1.48494 * 109.46944 * 90.00188 * 16 14 12 18 18 H 1.48504 * 109.47087 * 210.00213 * 16 14 12 19 19 H 1.48494 * 109.46968 * 330.00333 * 16 14 12 20 20 C 1.40901 * 119.80628 * 0.49726 * 11 10 9 21 21 C 1.36297 * 119.89136 * 359.75369 * 20 11 10 22 22 C 1.50698 * 109.47537 * 184.99808 * 3 2 1 23 23 N 1.34780 * 119.99613 * 65.00042 * 22 3 2 24 24 O 1.21276 * 120.00716 * 244.99795 * 22 3 2 25 25 H 1.08995 * 109.47002 * 59.99766 * 1 2 3 26 26 H 1.08997 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47016 * 300.00000 * 1 2 3 28 28 H 1.09003 * 109.47448 * 239.99868 * 2 1 3 29 29 H 1.09002 * 109.47199 * 119.99932 * 2 1 3 30 30 H 1.08000 * 119.95107 * 359.97438 * 9 8 6 31 31 H 1.08000 * 120.05485 * 179.72055 * 10 9 8 32 32 H 0.97003 * 119.99677 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.05369 * 179.73778 * 20 11 10 34 34 H 1.08000 * 119.94716 * 179.97438 * 21 20 11 35 35 H 0.97001 * 119.99997 * 0.02562 * 23 22 3 36 36 H 0.97005 * 120.00176 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6559 2.0916 1.2407 6 6 0.4680 2.7280 1.2561 7 8 -0.2279 2.7396 0.2600 8 6 0.0126 3.4104 2.4819 9 6 -1.2225 4.0707 2.4957 10 6 -1.6448 4.7073 3.6244 11 6 -0.8417 4.6912 4.7820 12 6 -1.2770 5.3442 5.9545 13 1 -0.5557 5.6848 6.6826 14 6 -2.6466 5.5512 6.1745 15 7 -3.5279 4.8597 5.5024 16 14 -3.2106 6.8156 7.4286 17 1 -3.3715 8.1339 6.7644 18 1 -4.5102 6.3917 8.0089 19 1 -2.1984 6.9262 8.5095 20 6 0.3999 4.0253 4.7637 21 6 0.8164 3.3957 3.6289 22 6 3.5419 1.4442 -0.1238 23 7 4.1260 0.9827 -1.2473 24 8 4.2251 1.8610 0.7875 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 -1.8392 4.0795 1.6091 31 1 -2.5953 5.2200 3.6328 32 1 -4.4752 5.0026 5.6548 33 1 1.0207 4.0140 5.6474 34 1 1.7681 2.8854 3.6137 35 1 3.5796 0.6497 -1.9764 36 1 5.0928 0.9842 -1.3273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758690081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:34 Heat of formation + Delta-G solvation = -121.572751 kcal Electronic energy + Delta-G solvation = -20945.615046 eV Core-core repulsion = 17586.891820 eV Total energy + Delta-G solvation = -3358.723226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32525 -38.97250 -37.43952 -35.70380 -34.22307 -33.94019 -32.92227 -30.24659 -29.57427 -27.79380 -26.00924 -22.64817 -22.21704 -21.15089 -20.40515 -19.81513 -17.88995 -17.59399 -17.38950 -16.38846 -15.84103 -15.78412 -15.35138 -14.53442 -14.17452 -14.08363 -13.86568 -13.29343 -13.09205 -12.72074 -12.23389 -12.17440 -12.11326 -11.84957 -11.79695 -11.37716 -11.27871 -11.01676 -10.87947 -10.68279 -10.29583 -10.09151 -9.85975 -9.76400 -9.55931 -9.44620 -9.38631 -7.73852 -7.63054 -7.09010 -4.67084 2.04764 2.50850 2.82111 2.88258 2.93776 2.96660 3.05260 3.61140 3.71052 3.77700 4.46680 4.63913 4.79449 4.98144 5.14140 5.47434 5.53044 5.71497 5.87369 5.92273 6.14200 6.24276 6.28594 6.44827 6.59165 6.75241 6.82444 6.93850 7.05979 7.09321 7.14180 7.42927 7.63249 7.79948 7.87338 8.02261 8.12463 8.36789 8.57461 8.68758 8.72492 9.82258 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.036899 B = 0.003755 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.649635 B = 7454.166937 C = 7911.097789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.070 3.930 4 H 0.107 0.893 5 O -0.331 6.331 6 C 0.514 3.486 7 O -0.546 6.546 8 C -0.274 4.274 9 C -0.032 4.032 10 C -0.185 4.185 11 C 0.132 3.868 12 C -0.434 4.434 13 H 0.088 0.912 14 C 0.073 3.927 15 N -0.764 5.764 16 Si 0.916 3.084 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.240 4.240 21 C -0.026 4.026 22 C 0.521 3.479 23 N -0.854 5.854 24 O -0.517 6.517 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.289 0.711 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.401 0.599 36 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.844 -6.443 -9.224 12.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.010 3.990 4 H 0.125 0.875 5 O -0.248 6.248 6 C 0.367 3.633 7 O -0.440 6.440 8 C -0.277 4.277 9 C -0.051 4.051 10 C -0.204 4.204 11 C 0.129 3.871 12 C -0.461 4.461 13 H 0.106 0.894 14 C -0.150 4.150 15 N -0.386 5.386 16 Si 0.740 3.260 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.182 1.182 20 C -0.259 4.259 21 C -0.045 4.045 22 C 0.304 3.696 23 N -0.420 5.420 24 O -0.390 6.390 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.230 0.770 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.674 -6.186 -8.809 12.168 hybrid contribution -0.229 0.218 -0.073 0.325 sum 5.445 -5.968 -8.882 12.007 Atomic orbital electron populations 1.21826 0.93687 1.01467 1.03744 1.21893 0.98206 0.93624 1.03161 1.22321 0.91416 0.95492 0.89748 0.87535 1.86756 1.38714 1.64380 1.34959 1.21648 0.77563 0.74945 0.89120 1.90688 1.55585 1.61539 1.36220 1.18179 1.00479 1.16941 0.92092 1.20438 0.92891 0.94281 0.97451 1.20970 1.02140 1.05417 0.91864 1.17859 0.90401 0.86485 0.92396 1.19950 0.92172 1.29936 1.04068 0.89427 1.26169 0.96739 0.95195 0.96882 1.69744 1.03635 1.30931 1.34291 0.86159 0.78793 0.80669 0.80405 1.18816 1.19923 1.18176 1.20732 1.00240 1.07159 0.97756 1.20611 0.96659 0.95094 0.92093 1.20352 0.90036 0.76903 0.82277 1.43721 1.11427 1.68008 1.18865 1.90787 1.65062 1.44546 1.38652 0.91690 0.92632 0.91883 0.90447 0.90466 0.88020 0.85933 0.89984 0.88176 0.87722 0.77035 0.76428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.56 37.16 0.32 -1.75 16 2 C -0.13 -1.59 5.62 -26.73 -0.15 -1.74 16 3 C 0.07 1.05 2.67 -27.89 -0.07 0.97 16 4 H 0.11 1.53 7.16 -51.93 -0.37 1.16 16 5 O -0.33 -6.59 8.59 -47.35 -0.41 -7.00 16 6 C 0.51 11.25 6.34 34.51 0.22 11.46 16 7 O -0.55 -12.02 13.51 -19.27 -0.26 -12.28 16 8 C -0.27 -6.53 5.89 -104.75 -0.62 -7.15 16 9 C -0.03 -0.77 9.52 -39.60 -0.38 -1.15 16 10 C -0.18 -4.69 8.63 -39.27 -0.34 -5.02 16 11 C 0.13 3.38 5.57 -106.80 -0.60 2.78 16 12 C -0.43 -10.73 9.04 -37.74 -0.34 -11.08 16 13 H 0.09 2.05 7.91 -52.49 -0.42 1.64 16 14 C 0.07 1.68 5.14 -17.30 -0.09 1.59 16 15 N -0.76 -18.30 10.95 55.56 0.61 -17.69 16 16 Si 0.92 17.13 29.60 -169.99 -5.03 12.10 16 17 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 18 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 20 C -0.24 -5.77 9.73 -39.27 -0.38 -6.15 16 21 C -0.03 -0.61 9.54 -39.60 -0.38 -0.98 16 22 C 0.52 7.34 7.45 -10.98 -0.08 7.26 16 23 N -0.85 -7.05 8.77 31.22 0.27 -6.77 16 24 O -0.52 -9.79 17.35 -14.05 -0.24 -10.03 16 25 H 0.06 0.90 7.79 -51.93 -0.40 0.49 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.09 6.06 -51.92 -0.31 0.78 16 28 H 0.08 0.64 7.77 -51.93 -0.40 0.24 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 2.36 7.63 -52.49 -0.40 1.96 16 31 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 32 H 0.29 6.20 8.29 -40.82 -0.34 5.87 16 33 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.10 2.29 7.59 -52.49 -0.40 1.89 16 35 H 0.40 2.01 8.53 -40.82 -0.35 1.66 16 36 H 0.40 2.74 8.93 -40.82 -0.36 2.38 16 LS Contribution 311.97 15.07 4.70 4.70 Total: -1.00 -30.54 311.97 -7.39 -37.93 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -4.15 Total: 9.99 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.89 Total: -10.95 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.88 Total: -24.47 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.91 Total: -29.31 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.54 -7.39 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758690081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.642 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds