Wall clock time and date at job start Thu Apr 9 2020 13:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47476 * 2 1 4 4 H 1.09001 * 109.47050 * 305.00004 * 3 2 1 5 5 O 1.45201 * 109.47141 * 64.99737 * 3 2 1 6 6 C 1.34770 * 117.00453 * 270.00296 * 5 3 2 7 7 O 1.21510 * 119.99735 * 0.02562 * 6 5 3 8 8 C 1.47506 * 120.00349 * 180.02562 * 6 5 3 9 9 C 1.40064 * 119.90295 * 180.02562 * 8 6 5 10 10 C 1.36296 * 120.10482 * 180.27495 * 9 8 6 11 11 C 1.40898 * 119.89315 * 359.47712 * 10 9 8 12 12 C 1.41097 * 120.10096 * 180.25697 * 11 10 9 13 13 H 1.07995 * 120.00535 * 204.79187 * 12 11 10 14 14 C 1.40253 * 119.99622 * 24.78642 * 12 11 10 15 15 N 1.30635 * 119.99755 * 17.74572 * 14 12 11 16 16 Si 1.86802 * 119.99899 * 197.74177 * 14 12 11 17 17 H 1.48494 * 109.46944 * 90.00188 * 16 14 12 18 18 H 1.48504 * 109.47087 * 210.00213 * 16 14 12 19 19 H 1.48494 * 109.46968 * 330.00333 * 16 14 12 20 20 C 1.40901 * 119.80628 * 0.49726 * 11 10 9 21 21 C 1.36297 * 119.89136 * 359.75369 * 20 11 10 22 22 C 1.50698 * 109.47537 * 184.99808 * 3 2 1 23 23 N 1.34780 * 119.99613 * 65.00042 * 22 3 2 24 24 O 1.21276 * 120.00716 * 244.99795 * 22 3 2 25 25 H 1.08995 * 109.47002 * 59.99766 * 1 2 3 26 26 H 1.08997 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47016 * 300.00000 * 1 2 3 28 28 H 1.09003 * 109.47448 * 239.99868 * 2 1 3 29 29 H 1.09002 * 109.47199 * 119.99932 * 2 1 3 30 30 H 1.08000 * 119.95107 * 359.97438 * 9 8 6 31 31 H 1.08000 * 120.05485 * 179.72055 * 10 9 8 32 32 H 0.97003 * 119.99677 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.05369 * 179.73778 * 20 11 10 34 34 H 1.08000 * 119.94716 * 179.97438 * 21 20 11 35 35 H 0.97001 * 119.99997 * 0.02562 * 23 22 3 36 36 H 0.97005 * 120.00176 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6559 2.0916 1.2407 6 6 0.4680 2.7280 1.2561 7 8 -0.2279 2.7396 0.2600 8 6 0.0126 3.4104 2.4819 9 6 -1.2225 4.0707 2.4957 10 6 -1.6448 4.7073 3.6244 11 6 -0.8417 4.6912 4.7820 12 6 -1.2770 5.3442 5.9545 13 1 -0.5557 5.6848 6.6826 14 6 -2.6466 5.5512 6.1745 15 7 -3.5279 4.8597 5.5024 16 14 -3.2106 6.8156 7.4286 17 1 -3.3715 8.1339 6.7644 18 1 -4.5102 6.3917 8.0089 19 1 -2.1984 6.9262 8.5095 20 6 0.3999 4.0253 4.7637 21 6 0.8164 3.3957 3.6289 22 6 3.5419 1.4442 -0.1238 23 7 4.1260 0.9827 -1.2473 24 8 4.2251 1.8610 0.7875 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 -1.8392 4.0795 1.6091 31 1 -2.5953 5.2200 3.6328 32 1 -4.4752 5.0026 5.6548 33 1 1.0207 4.0140 5.6474 34 1 1.7681 2.8854 3.6137 35 1 3.5796 0.6497 -1.9764 36 1 5.0928 0.9842 -1.3273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758690081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:33 Heat of formation + Delta-G solvation = -140.784026 kcal Electronic energy + Delta-G solvation = -20946.448110 eV Core-core repulsion = 17586.891820 eV Total energy + Delta-G solvation = -3359.556290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.75967 -40.34619 -39.22978 -37.27224 -35.78584 -35.30428 -33.98221 -32.09006 -31.46038 -29.06479 -27.75882 -24.29955 -23.34608 -22.98265 -21.85196 -21.28886 -19.43745 -18.97572 -18.92128 -17.59485 -17.39870 -17.19937 -16.97891 -15.79499 -15.74357 -15.43533 -15.27758 -15.01372 -14.65954 -14.16216 -14.05954 -13.79810 -13.37070 -13.34194 -13.13111 -12.97548 -12.86046 -12.66024 -12.40328 -11.99958 -11.82120 -11.60129 -11.41803 -11.23876 -11.16976 -10.90827 -10.77800 -9.64818 -9.53725 -8.85506 -6.56148 0.23670 1.12547 1.35991 1.40234 1.41813 1.54429 1.55069 1.88994 2.14803 2.58418 2.68572 3.60785 3.67342 3.71631 3.90175 4.04472 4.31880 4.37476 4.40824 4.44940 4.72126 4.90287 4.91887 4.96683 5.02946 5.15117 5.19830 5.30519 5.41033 5.54282 5.76324 5.81483 5.91242 5.96956 6.14407 6.29779 6.48104 6.69367 6.80861 7.01706 7.21377 8.09461 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.036899 B = 0.003755 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.649635 B = 7454.166937 C = 7911.097789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.058 3.942 4 H 0.114 0.886 5 O -0.345 6.345 6 C 0.522 3.478 7 O -0.552 6.552 8 C -0.291 4.291 9 C -0.037 4.037 10 C -0.201 4.201 11 C 0.106 3.894 12 C -0.459 4.459 13 H 0.094 0.906 14 C 0.035 3.965 15 N -0.792 5.792 16 Si 0.993 3.007 17 H -0.260 1.260 18 H -0.264 1.264 19 H -0.253 1.253 20 C -0.252 4.252 21 C -0.025 4.025 22 C 0.524 3.476 23 N -0.819 5.819 24 O -0.573 6.573 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.020 0.980 28 H 0.127 0.873 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.299 0.701 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.422 0.578 36 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 -7.120 -10.009 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.000 4.000 4 H 0.132 0.868 5 O -0.262 6.262 6 C 0.375 3.625 7 O -0.447 6.447 8 C -0.294 4.294 9 C -0.056 4.056 10 C -0.220 4.220 11 C 0.102 3.898 12 C -0.486 4.486 13 H 0.112 0.888 14 C -0.185 4.185 15 N -0.415 5.415 16 Si 0.812 3.188 17 H -0.184 1.184 18 H -0.189 1.189 19 H -0.176 1.176 20 C -0.271 4.271 21 C -0.044 4.044 22 C 0.308 3.692 23 N -0.386 5.386 24 O -0.452 6.452 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.039 0.961 28 H 0.145 0.855 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.254 0.746 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.164 -6.912 -9.673 13.392 hybrid contribution -0.342 0.314 0.025 0.464 sum 5.823 -6.599 -9.648 13.059 Atomic orbital electron populations 1.21794 0.94902 1.02375 1.01502 1.21950 0.96956 0.91910 1.05347 1.22814 0.92466 0.96909 0.87836 0.86795 1.86687 1.37375 1.64304 1.37827 1.21209 0.78166 0.74867 0.88298 1.90664 1.55977 1.61782 1.36234 1.18440 1.00429 1.17139 0.93371 1.20523 0.93386 0.94313 0.97336 1.20947 1.02157 1.06430 0.92477 1.18190 0.91197 0.87362 0.93028 1.20268 0.93500 1.30640 1.04149 0.88784 1.27075 0.96110 0.96599 0.98762 1.69773 1.04487 1.31865 1.35381 0.85024 0.78557 0.77574 0.77633 1.18400 1.18853 1.17609 1.20927 1.00240 1.07328 0.98576 1.20742 0.97011 0.94793 0.91816 1.20230 0.89311 0.76730 0.82943 1.43410 1.12366 1.65480 1.17379 1.90775 1.65826 1.47593 1.40985 0.91882 0.90186 0.96079 0.85477 0.90919 0.87600 0.86834 0.88913 0.86875 0.86503 0.74617 0.74940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.56 71.98 0.62 -3.25 16 2 C -0.12 -2.70 5.62 30.59 0.17 -2.53 16 3 C 0.06 1.66 2.67 29.85 0.08 1.74 16 4 H 0.11 3.07 7.16 -2.39 -0.02 3.06 16 5 O -0.35 -13.76 8.59 -50.44 -0.43 -14.19 16 6 C 0.52 23.12 6.34 70.27 0.45 23.57 16 7 O -0.55 -24.38 13.51 19.80 0.27 -24.11 16 8 C -0.29 -14.21 5.89 -19.95 -0.12 -14.33 16 9 C -0.04 -1.85 9.52 22.26 0.21 -1.64 16 10 C -0.20 -10.57 8.63 22.47 0.19 -10.37 16 11 C 0.11 5.56 5.57 -21.27 -0.12 5.45 16 12 C -0.46 -23.04 9.04 23.46 0.21 -22.83 16 13 H 0.09 4.44 7.91 -2.91 -0.02 4.42 16 14 C 0.03 1.60 5.14 85.36 0.44 2.04 16 15 N -0.79 -38.40 10.95 21.88 0.24 -38.16 16 16 Si 0.99 34.50 29.60 68.60 2.03 36.53 16 17 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 18 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 19 H -0.25 -8.50 7.11 99.48 0.71 -7.80 16 20 C -0.25 -12.41 9.73 22.47 0.22 -12.19 16 21 C -0.03 -1.20 9.54 22.26 0.21 -0.99 16 22 C 0.52 13.84 7.45 87.66 0.65 14.49 16 23 N -0.82 -10.81 8.77 -173.53 -1.52 -12.33 16 24 O -0.57 -21.45 17.35 15.73 0.27 -21.17 16 25 H 0.06 1.64 7.79 -2.39 -0.02 1.62 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.02 0.71 6.06 -2.38 -0.01 0.69 16 28 H 0.13 1.50 7.77 -2.39 -0.02 1.49 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.11 5.09 7.63 -2.91 -0.02 5.07 16 31 H 0.11 6.05 6.16 -2.91 -0.02 6.04 16 32 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 33 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 34 H 0.12 5.20 7.59 -2.91 -0.02 5.18 16 35 H 0.42 2.38 8.53 -92.71 -0.79 1.59 16 36 H 0.42 4.29 8.93 -92.70 -0.83 3.46 16 Total: -1.00 -68.64 311.97 3.59 -65.05 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -0.48 Total: 29.22 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 3.22 Total: -20.84 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -1.28 Total: -50.49 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: 0.11 Total: -59.48 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal Total: -68.64 3.59 -65.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758690081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.734 kcal (2) G-P(sol) polarization free energy of solvation -68.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds