Wall clock time and date at job start Thu Apr 9 2020 13:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53006 * 109.47285 * 2 1 4 4 N 1.46505 * 109.47390 * 119.99782 * 2 1 3 5 5 C 1.34770 * 120.00293 * 154.99674 * 4 2 1 6 6 O 1.21533 * 120.00016 * 0.02562 * 5 4 2 7 7 C 1.48009 * 120.00060 * 180.02562 * 5 4 2 8 8 C 1.39592 * 119.98963 * 180.02562 * 7 5 4 9 9 C 1.37772 * 120.00509 * 180.27756 * 8 7 5 10 10 C 1.39669 * 119.99149 * 359.44690 * 9 8 7 11 11 C 1.47817 * 120.01043 * 180.27837 * 10 9 8 12 12 O 1.21482 * 120.00107 * 180.29703 * 11 10 9 13 13 O 1.34703 * 119.99697 * 0.29273 * 11 10 9 14 14 C 1.34805 * 116.99768 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00219 * 0.02562 * 14 13 11 16 16 C 1.38884 * 120.00051 * 179.97438 * 14 13 11 17 17 N 1.31367 * 119.99866 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99984 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46828 * 90.00052 * 18 16 14 20 20 H 1.48492 * 109.47102 * 209.99849 * 18 16 14 21 21 H 1.48498 * 109.46948 * 330.00129 * 18 16 14 22 22 C 1.39665 * 119.97846 * 0.57146 * 10 9 8 23 23 C 1.37768 * 119.99240 * 359.70698 * 22 10 9 24 24 H 1.09004 * 109.47583 * 300.00343 * 1 2 3 25 25 H 1.08999 * 109.47192 * 60.00449 * 1 2 3 26 26 H 1.08998 * 109.47447 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47583 * 239.99657 * 2 1 3 28 28 H 1.09004 * 109.46998 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46639 * 299.99890 * 3 2 1 30 30 H 1.08994 * 109.47251 * 59.99926 * 3 2 1 31 31 H 0.97000 * 119.99512 * 335.00392 * 4 2 1 32 32 H 1.08002 * 119.99499 * 359.97438 * 8 7 5 33 33 H 1.08004 * 120.00162 * 179.72083 * 9 8 7 34 34 H 0.97001 * 119.99783 * 180.02562 * 17 16 14 35 35 H 1.08001 * 119.99930 * 179.69020 * 22 10 9 36 36 H 1.08002 * 119.99175 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2402 -1.2592 1.1944 6 8 3.9372 -1.1986 0.2007 7 6 3.7333 -1.9573 2.4028 8 6 4.9992 -2.5457 2.4009 9 6 5.4563 -3.2005 3.5235 10 6 4.6576 -3.2657 4.6675 11 6 5.1501 -3.9629 5.8743 12 8 4.4531 -4.0241 6.8673 13 8 6.3717 -4.5304 5.8727 14 6 6.7597 -5.1507 7.0049 15 1 6.1001 -5.1766 7.8598 16 6 8.0072 -5.7575 7.0718 17 7 8.3851 -6.3624 8.1750 18 14 9.1472 -5.7146 5.5926 19 1 10.0067 -4.5059 5.6650 20 1 10.0009 -6.9296 5.5902 21 1 8.3401 -5.6742 4.3467 22 6 3.3910 -2.6772 4.6687 23 6 2.9324 -2.0275 3.5438 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.4621 -0.7386 1.9895 32 1 5.6184 -2.4917 1.5176 33 1 6.4339 -3.6596 3.5205 34 1 9.2565 -6.7859 8.2218 35 1 2.7711 -2.7317 5.5514 36 1 1.9527 -1.5727 3.5446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767798115.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:37 Heat of formation + Delta-G solvation = -95.222362 kcal Electronic energy + Delta-G solvation = -20364.214154 eV Core-core repulsion = 17006.633566 eV Total energy + Delta-G solvation = -3357.580588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40851 -39.44182 -38.02055 -36.19412 -35.41564 -32.61498 -32.36490 -30.92606 -30.58356 -27.58416 -26.19105 -24.43594 -22.58626 -21.81989 -20.89937 -20.00296 -18.25048 -17.96727 -17.30196 -16.45355 -15.50464 -15.29242 -15.02724 -14.83353 -14.65401 -14.32877 -14.24844 -13.78459 -13.49017 -13.29208 -12.80934 -12.66735 -12.53764 -12.43271 -12.38582 -11.98989 -11.73859 -11.36323 -11.31640 -11.03132 -10.60870 -10.47684 -10.07204 -9.82265 -9.40329 -9.34567 -8.99426 -8.89000 -8.78887 -6.51565 -4.21259 0.54754 1.41024 2.56663 2.90263 3.13638 3.18389 3.29575 3.44223 3.93970 4.10754 4.14605 4.42113 4.62790 4.69755 4.79851 4.88287 4.96449 5.02354 5.20233 5.31895 5.37236 5.41410 5.42378 5.56237 5.65960 5.73530 5.91847 5.94942 6.05450 6.20622 6.29632 6.41543 6.61672 6.84710 7.27248 7.59568 7.90025 8.02966 8.50171 8.85606 9.54272 10.55711 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.036562 B = 0.003471 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.648849 B = 8065.489184 C = 8689.547615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 C -0.165 4.165 4 N -0.726 5.726 5 C 0.563 3.437 6 O -0.537 6.537 7 C -0.132 4.132 8 C -0.068 4.068 9 C -0.088 4.088 10 C -0.057 4.057 11 C 0.436 3.564 12 O -0.535 6.535 13 O -0.237 6.237 14 C -0.373 4.373 15 H 0.113 0.887 16 C 0.066 3.934 17 N -0.862 5.862 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.257 1.257 22 C -0.079 4.079 23 C -0.096 4.096 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.400 0.600 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.283 0.717 35 H 0.142 0.858 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.013 12.267 -15.622 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 C -0.223 4.223 4 N -0.379 5.379 5 C 0.351 3.649 6 O -0.415 6.415 7 C -0.136 4.136 8 C -0.087 4.087 9 C -0.106 4.106 10 C -0.058 4.058 11 C 0.283 3.717 12 O -0.432 6.432 13 O -0.145 6.145 14 C -0.448 4.448 15 H 0.130 0.870 16 C -0.139 4.139 17 N -0.500 5.500 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.181 1.181 22 C -0.097 4.097 23 C -0.115 4.115 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.236 0.764 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.093 0.907 35 H 0.160 0.840 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.512 12.162 -15.983 23.662 hybrid contribution 0.302 -0.110 0.058 0.326 sum -12.210 12.053 -15.925 23.408 Atomic orbital electron populations 1.22085 0.94044 1.02771 1.02992 1.20953 0.93986 0.93090 0.88815 1.22198 1.02327 0.95695 1.02070 1.46047 1.17890 1.56970 1.16949 1.18377 0.81132 0.77837 0.87512 1.90752 1.56234 1.59935 1.34574 1.19964 0.96586 1.02957 0.94060 1.21199 0.94291 0.94707 0.98486 1.21568 1.00437 0.97101 0.91495 1.19629 0.94916 0.98309 0.92984 1.20463 0.81815 0.81864 0.87523 1.90671 1.57358 1.60140 1.34987 1.83502 1.31063 1.59487 1.40487 1.20766 1.02528 1.31412 0.90059 0.86972 1.24616 0.96537 0.94796 0.97971 1.69566 1.21425 1.32749 1.26246 0.86216 0.80154 0.78152 0.82521 1.19555 1.20498 1.18117 1.21164 0.94606 0.95378 0.98547 1.21090 0.99083 0.99069 0.92240 0.91968 0.90870 0.91846 0.89329 0.91935 0.91636 0.92405 0.76425 0.84306 0.83851 0.90668 0.84013 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 9.38 37.15 0.35 -0.49 16 2 C 0.14 1.07 3.18 -67.93 -0.22 0.86 16 3 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 4 N -0.73 -6.57 5.03 -54.70 -0.27 -6.85 16 5 C 0.56 7.17 7.74 -12.26 -0.09 7.07 16 6 O -0.54 -8.52 16.00 5.34 0.09 -8.43 16 7 C -0.13 -1.74 5.88 -104.88 -0.62 -2.36 16 8 C -0.07 -0.98 9.58 -39.25 -0.38 -1.36 16 9 C -0.09 -1.44 9.60 -39.22 -0.38 -1.82 16 10 C -0.06 -1.04 5.88 -104.91 -0.62 -1.66 16 11 C 0.44 10.35 7.84 34.65 0.27 10.62 16 12 O -0.53 -14.10 15.58 -19.25 -0.30 -14.40 16 13 O -0.24 -6.17 7.81 -21.42 -0.17 -6.34 16 14 C -0.37 -10.84 10.11 30.97 0.31 -10.53 16 15 H 0.11 3.59 7.09 -52.48 -0.37 3.22 16 16 C 0.07 1.85 5.50 -17.51 -0.10 1.75 16 17 N -0.86 -24.84 13.95 55.49 0.77 -24.06 16 18 Si 0.90 20.76 28.62 -169.99 -4.87 15.90 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 22 C -0.08 -1.18 9.58 -39.22 -0.38 -1.56 16 23 C -0.10 -1.13 9.52 -39.25 -0.37 -1.51 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.85 7.58 -51.93 -0.39 0.45 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.40 2.65 6.62 -40.82 -0.27 2.38 16 32 H 0.14 1.88 7.64 -52.49 -0.40 1.48 16 33 H 0.14 2.37 7.60 -52.48 -0.40 1.97 16 34 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.14 2.07 7.64 -52.49 -0.40 1.67 16 36 H 0.13 0.99 6.39 -52.49 -0.34 0.66 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -33.28 319.29 -6.04 -39.31 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.24 Total: 1.92 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.86 Total: -1.86 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.50 Total: -30.91 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.38 Total: -29.17 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.87 Total: 15.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.28 -6.04 -39.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767798115.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.908 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds