Wall clock time and date at job start Thu Apr 9 2020 13:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00042 * 2 1 4 4 N 1.46504 * 109.47382 * 124.99843 * 3 2 1 5 5 C 1.46495 * 119.99986 * 274.64630 * 4 3 2 6 6 C 1.50697 * 109.46931 * 269.99785 * 5 4 3 7 7 H 1.07994 * 120.00656 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99641 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00449 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99715 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47514 * 90.00139 * 10 8 6 12 12 H 1.48509 * 109.47125 * 209.99773 * 10 8 6 13 13 H 1.48495 * 109.47171 * 329.99602 * 10 8 6 14 14 C 1.34780 * 120.00059 * 94.64205 * 4 3 2 15 15 O 1.21592 * 119.99811 * 4.97446 * 14 4 3 16 16 C 1.47544 * 120.00260 * 184.97523 * 14 4 3 17 17 C 1.39804 * 120.16629 * 303.57959 * 16 14 4 18 18 C 1.37744 * 120.00205 * 180.22697 * 17 16 14 19 19 C 1.38541 * 120.34597 * 359.79339 * 18 17 16 20 20 C 1.38429 * 120.33281 * 359.97163 * 19 18 17 21 21 O 1.36002 * 120.00246 * 180.02562 * 20 19 18 22 22 C 1.39184 * 119.99042 * 0.02562 * 20 19 18 23 23 O 1.35740 * 120.16460 * 179.97438 * 22 20 19 24 24 H 1.07999 * 119.99799 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99700 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.00012 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47121 * 5.00165 * 3 2 1 28 28 H 1.08998 * 109.46862 * 244.99525 * 3 2 1 29 29 H 1.08997 * 109.47085 * 30.00073 * 5 4 3 30 30 H 1.09004 * 109.46980 * 149.99739 * 5 4 3 31 31 H 0.97003 * 120.00792 * 179.97438 * 9 8 6 32 32 H 1.07999 * 119.99755 * 0.02562 * 17 16 14 33 33 H 1.08002 * 119.82606 * 179.76585 * 18 17 16 34 34 H 1.07995 * 119.83040 * 179.97438 * 19 18 17 35 35 H 0.96695 * 114.00313 * 269.97934 * 21 20 19 36 36 H 0.96703 * 113.99987 * 90.00463 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5304 1.7696 2.4505 6 6 2.7230 3.2584 2.5820 7 1 3.1484 3.8222 1.7651 8 6 2.3570 3.9006 3.7459 9 7 1.8394 3.2141 4.7410 10 14 2.5951 5.7462 3.9087 11 1 1.3756 6.4467 3.4320 12 1 2.8386 6.0902 5.3328 13 1 3.7603 6.1690 3.0911 14 6 4.2760 0.9540 0.9589 15 8 4.6838 0.6774 -0.1527 16 6 5.1846 0.8757 2.1187 17 6 5.3848 1.9957 2.9311 18 6 6.2375 1.9202 4.0103 19 6 6.8970 0.7368 4.2998 20 6 6.7054 -0.3822 3.5077 21 8 7.3558 -1.5407 3.7984 22 6 5.8469 -0.3215 2.4138 23 8 5.6568 -1.4165 1.6344 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8501 -0.9354 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 1.4733 1.5286 2.5626 30 1 3.1035 1.2592 3.2247 31 1 1.5823 3.6658 5.5600 32 1 4.8735 2.9211 2.7106 33 1 6.3930 2.7883 4.6338 34 1 7.5639 0.6870 5.1477 35 1 8.2172 -1.6269 3.3675 36 1 4.9283 -1.9831 1.9231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816803120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:44 Heat of formation + Delta-G solvation = -68.835390 kcal Electronic energy + Delta-G solvation = -21860.574109 eV Core-core repulsion = 18504.137746 eV Total energy + Delta-G solvation = -3356.436363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17768 -38.65671 -36.62535 -36.08566 -35.43828 -33.52032 -32.23032 -30.21696 -28.83765 -27.56321 -25.84190 -23.39919 -22.59096 -22.09230 -19.95081 -19.11602 -17.91618 -17.73746 -16.62704 -16.18499 -16.10426 -15.50238 -15.13265 -14.88969 -14.53018 -14.29677 -13.98978 -13.64092 -12.88077 -12.70584 -12.46498 -12.10454 -11.99507 -11.68615 -11.48891 -11.40235 -11.10145 -10.92249 -10.89777 -10.72761 -10.34653 -10.08952 -9.84327 -9.28562 -8.94821 -8.67755 -8.40212 -8.16532 -7.81044 -6.27364 -4.34931 1.35026 1.54011 2.53305 3.15462 3.23811 3.24471 3.30599 3.85372 3.99024 4.24447 4.37021 4.60483 5.03837 5.12314 5.33161 5.41289 5.52549 5.59895 5.79648 5.91894 6.02707 6.10879 6.17844 6.31797 6.52059 6.67470 6.73527 6.86131 6.89722 7.02698 7.10476 7.16069 7.48601 7.65776 7.67175 7.96491 7.99899 8.23384 8.68825 8.92353 9.30938 10.78590 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.008569 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.656038 B = 3266.887381 C = 4945.298536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.142 3.858 4 N -0.587 5.587 5 C 0.235 3.765 6 C -0.543 4.543 7 H 0.064 0.936 8 C 0.070 3.930 9 N -0.881 5.881 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.563 3.437 15 O -0.555 6.555 16 C -0.129 4.129 17 C -0.052 4.052 18 C -0.121 4.121 19 C -0.118 4.118 20 C 0.057 3.943 21 O -0.493 6.493 22 C 0.118 3.882 23 O -0.483 6.483 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.267 0.733 32 H 0.167 0.833 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.385 0.615 36 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 -4.790 -1.405 6.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C 0.019 3.981 4 N -0.317 5.317 5 C 0.116 3.884 6 C -0.581 4.581 7 H 0.082 0.918 8 C -0.135 4.135 9 N -0.519 5.519 10 Si 0.718 3.282 11 H -0.204 1.204 12 H -0.209 1.209 13 H -0.195 1.195 14 C 0.351 3.649 15 O -0.434 6.434 16 C -0.133 4.133 17 C -0.071 4.071 18 C -0.140 4.140 19 C -0.137 4.137 20 C 0.012 3.988 21 O -0.302 6.302 22 C 0.072 3.928 23 O -0.292 6.292 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.184 0.816 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.239 0.761 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.695 -4.802 -1.757 6.942 hybrid contribution -0.076 0.828 0.431 0.937 sum 4.619 -3.974 -1.325 6.236 Atomic orbital electron populations 1.23771 0.95748 1.01600 1.01653 1.23362 0.96101 0.99193 0.98919 1.20442 0.92214 0.94826 0.90645 1.48172 1.08144 1.62922 1.12482 1.19506 0.96308 0.95003 0.77630 1.21449 1.43087 0.92733 1.00848 0.91816 1.24930 0.94599 0.98428 0.95500 1.69922 1.40787 1.36063 1.05079 0.86595 0.78956 0.85078 0.77543 1.20405 1.20929 1.19533 1.18051 0.82093 0.76964 0.87822 1.90710 1.76329 1.51143 1.25260 1.20191 1.00057 0.94933 0.98096 1.22128 0.93522 0.99899 0.91507 1.21013 0.97296 0.97547 0.98100 1.21403 1.00738 0.91887 0.99664 1.18549 0.99080 0.86665 0.94502 1.84805 1.36103 1.36666 1.72622 1.18741 0.97385 0.87031 0.89672 1.84743 1.56329 1.35232 1.52918 0.88868 0.88395 0.87895 0.89840 0.89719 0.94509 0.94136 0.92354 0.81595 0.85170 0.85382 0.76070 0.75749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 14.32 29.01 0.42 -2.31 16 2 C -0.16 -2.57 9.84 -36.03 -0.35 -2.92 16 3 C 0.14 2.63 5.93 -5.19 -0.03 2.60 16 4 N -0.59 -12.39 2.44 -177.67 -0.43 -12.83 16 5 C 0.24 5.44 4.73 -5.20 -0.02 5.42 16 6 C -0.54 -13.22 6.56 -34.44 -0.23 -13.44 16 7 H 0.06 1.57 7.76 -52.49 -0.41 1.17 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.88 -23.12 13.29 55.43 0.74 -22.38 16 10 Si 0.89 19.35 29.54 -169.99 -5.02 14.33 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 C 0.56 12.30 6.77 -12.46 -0.08 12.22 16 15 O -0.55 -13.24 16.35 4.48 0.07 -13.17 16 16 C -0.13 -2.62 4.63 -104.87 -0.49 -3.11 16 17 C -0.05 -1.03 7.79 -39.18 -0.31 -1.33 16 18 C -0.12 -2.03 10.02 -39.65 -0.40 -2.43 16 19 C -0.12 -1.81 9.97 -39.40 -0.39 -2.20 16 20 C 0.06 0.93 6.71 -39.16 -0.26 0.67 16 21 O -0.49 -6.96 13.29 -34.27 -0.46 -7.42 16 22 C 0.12 2.18 6.72 -38.58 -0.26 1.92 16 23 O -0.48 -8.48 12.56 -37.36 -0.47 -8.95 16 24 H 0.09 1.16 8.06 -52.49 -0.42 0.73 16 25 H 0.10 1.36 7.84 -52.49 -0.41 0.95 16 26 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 27 H 0.08 1.51 7.76 -51.93 -0.40 1.11 16 28 H 0.08 1.58 7.23 -51.93 -0.38 1.21 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.04 0.99 6.14 -51.93 -0.32 0.68 16 31 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.17 3.53 5.20 -52.49 -0.27 3.26 16 33 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.38 3.70 9.06 45.56 0.41 4.11 16 36 H 0.39 5.32 9.06 45.56 0.41 5.73 16 LS Contribution 316.90 15.07 4.78 4.78 Total: -1.00 -30.16 316.90 -5.91 -36.07 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -2.61 Total: 12.85 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.51 Total: -3.28 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.30 Total: -35.21 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.85 Total: -29.53 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.16 -5.91 -36.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.766 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds