Wall clock time and date at job start Thu Apr 9 2020 13:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21272 * 119.99543 * 2 1 4 4 N 1.34775 * 120.00063 * 179.97438 * 2 1 3 5 5 C 1.39426 * 119.99796 * 185.15427 * 4 2 1 6 6 C 1.39007 * 119.63433 * 174.69348 * 5 4 2 7 7 C 1.39556 * 118.93934 * 179.97438 * 6 5 4 8 8 C 1.48155 * 120.89086 * 180.02562 * 7 6 5 9 9 O 1.21514 * 119.99892 * 20.70616 * 8 7 6 10 10 N 1.34780 * 120.00438 * 200.71068 * 8 7 6 11 11 C 1.46496 * 119.99657 * 5.02746 * 10 8 7 12 12 C 1.46499 * 120.00195 * 185.03328 * 10 8 7 13 13 C 1.50701 * 109.46713 * 269.99649 * 12 10 8 14 14 H 1.07999 * 120.00289 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99965 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99568 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00154 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46593 * 90.00356 * 17 15 13 19 19 H 1.48496 * 109.47134 * 210.00171 * 17 15 13 20 20 H 1.48503 * 109.47365 * 330.00646 * 17 15 13 21 21 C 1.39984 * 118.22267 * 0.27854 * 7 6 5 22 22 C 1.38005 * 119.15458 * 359.45341 * 21 7 6 23 23 N 1.31884 * 120.99053 * 0.55891 * 22 21 7 24 24 H 1.09001 * 109.46890 * 239.99820 * 1 2 3 25 25 H 1.08993 * 109.47114 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46798 * 120.00844 * 1 2 3 27 27 H 0.96996 * 119.99953 * 5.15666 * 4 2 1 28 28 H 1.08003 * 120.53529 * 359.96298 * 6 5 4 29 29 H 1.09005 * 109.47099 * 264.44711 * 11 10 8 30 30 H 1.09000 * 109.47415 * 24.44802 * 11 10 8 31 31 H 1.09004 * 109.47156 * 144.44624 * 11 10 8 32 32 H 1.08998 * 109.47205 * 149.99599 * 12 10 8 33 33 H 1.09001 * 109.47241 * 29.99436 * 12 10 8 34 34 H 0.97006 * 119.99551 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.41819 * 179.70566 * 21 7 6 36 36 H 1.07995 * 119.49900 * 180.27698 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5710 -1.1695 0.1090 6 6 4.2497 -2.3775 0.2203 7 6 5.6411 -2.3630 0.3275 8 6 6.4079 -3.6249 0.4476 9 8 5.9123 -4.6738 0.0860 10 7 7.6552 -3.6096 0.9581 11 6 8.2114 -2.3654 1.4956 12 6 8.4547 -4.8371 0.9755 13 6 8.2080 -5.5790 2.2638 14 1 7.5238 -5.1767 2.9961 15 6 8.8550 -6.7720 2.5071 16 7 9.6879 -7.2621 1.6150 17 14 8.5498 -7.6914 4.1042 18 1 7.4132 -8.6303 3.9253 19 1 9.7681 -8.4542 4.4769 20 1 8.2252 -6.7205 5.1800 21 6 6.2924 -1.1239 0.3239 22 6 5.5433 0.0290 0.2040 23 7 4.2293 -0.0222 0.1045 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5140 -0.8899 27 1 1.6989 -2.0055 -0.0746 28 1 3.7090 -3.3124 0.2239 29 1 8.8089 -1.8732 0.7281 30 1 7.3989 -1.7066 1.8017 31 1 8.8405 -2.5908 2.3568 32 1 9.5120 -4.5831 0.8991 33 1 8.1708 -5.4676 0.1329 34 1 10.1434 -8.1013 1.7863 35 1 7.3676 -1.0711 0.4097 36 1 6.0405 0.9877 0.1960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528167661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:55 Heat of formation + Delta-G solvation = 4.788677 kcal Electronic energy + Delta-G solvation = -20798.905623 eV Core-core repulsion = 17477.954590 eV Total energy + Delta-G solvation = -3320.951032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96925 -39.59390 -38.29607 -35.32575 -34.86079 -33.01396 -32.13386 -31.09518 -29.26504 -27.81205 -26.42567 -24.60824 -23.21237 -22.71778 -20.87850 -19.33402 -18.02995 -17.14260 -16.61660 -16.32119 -16.05755 -15.71944 -15.32787 -14.93992 -14.51633 -14.48289 -14.03293 -13.81522 -13.77379 -13.03627 -12.83542 -12.65992 -12.48474 -12.29838 -12.20990 -11.37105 -11.15045 -10.98175 -10.75768 -10.60230 -10.38164 -10.21169 -9.78367 -9.62614 -9.47193 -8.92826 -8.48585 -8.32507 -7.78724 -6.09646 -4.14593 0.95396 1.04390 2.46421 2.67110 3.28524 3.33946 3.35490 3.41231 3.72348 4.04764 4.23818 4.40381 4.66478 4.73545 4.92312 4.94722 5.02826 5.07394 5.13819 5.25033 5.48550 5.55214 5.65380 5.75534 5.75759 6.05359 6.14895 6.17548 6.64266 6.95018 6.99791 7.32391 7.40648 7.82822 7.85914 8.15005 8.15414 8.23282 8.77709 8.93445 9.50479 10.98580 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029711 B = 0.003750 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.184907 B = 7464.387457 C = 7942.856972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.500 3.500 3 O -0.480 6.480 4 N -0.663 5.663 5 C 0.348 3.652 6 C -0.153 4.153 7 C -0.047 4.047 8 C 0.543 3.457 9 O -0.528 6.528 10 N -0.588 5.588 11 C 0.062 3.938 12 C 0.245 3.755 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.195 4.195 22 C 0.121 3.879 23 N -0.470 5.470 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.419 0.581 28 H 0.146 0.854 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.165 0.835 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.776 13.906 -2.623 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.286 3.714 3 O -0.350 6.350 4 N -0.311 5.311 5 C 0.117 3.883 6 C -0.177 4.177 7 C -0.058 4.058 8 C 0.329 3.671 9 O -0.406 6.406 10 N -0.319 5.319 11 C -0.081 4.081 12 C 0.127 3.873 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.216 4.216 22 C -0.036 4.036 23 N -0.186 5.186 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.255 0.745 28 H 0.164 0.836 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.182 0.818 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.006 14.755 -2.903 19.882 hybrid contribution 0.157 -1.849 0.958 2.088 sum -12.850 12.906 -1.944 18.316 Atomic orbital electron populations 1.21943 0.90842 1.05879 1.04513 1.21066 0.90634 0.83338 0.76357 1.90829 1.70107 1.30407 1.43635 1.43666 1.04003 1.10901 1.72491 1.18297 0.84661 0.89505 0.95824 1.21552 0.94115 0.97892 1.04106 1.20447 0.93559 0.94703 0.97127 1.18066 0.82019 0.87342 0.79719 1.90758 1.68260 1.31679 1.49865 1.48067 1.14185 1.12138 1.57499 1.22384 0.99390 0.87150 0.99162 1.19377 0.89709 0.79789 0.98470 1.21406 1.26028 1.06314 1.02934 0.92362 1.24937 0.94939 0.97005 0.97187 1.69931 1.28260 1.20483 1.34655 0.86475 0.77726 0.79860 0.83231 1.20505 1.21091 1.19894 1.23267 1.03700 0.92306 1.02371 1.22635 0.88170 0.98486 0.94312 1.67445 1.10062 1.26903 1.14163 0.89114 0.88617 0.89182 0.74456 0.83645 0.92745 0.90392 0.90688 0.94529 0.93696 0.92630 0.81808 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.32 36.01 0.37 -0.61 16 2 C 0.50 5.52 7.90 -10.98 -0.09 5.43 16 3 O -0.48 -7.58 15.35 5.56 0.09 -7.49 16 4 N -0.66 -6.99 5.39 -11.44 -0.06 -7.05 16 5 C 0.35 4.90 7.42 -154.76 -1.15 3.75 16 6 C -0.15 -2.27 9.51 -38.81 -0.37 -2.64 16 7 C -0.05 -0.77 5.61 -104.68 -0.59 -1.36 16 8 C 0.54 11.37 7.56 -12.19 -0.09 11.28 16 9 O -0.53 -13.16 16.25 5.35 0.09 -13.07 16 10 N -0.59 -12.27 2.86 -183.96 -0.53 -12.80 16 11 C 0.06 0.95 8.69 59.84 0.52 1.47 16 12 C 0.25 6.29 5.15 -5.19 -0.03 6.26 16 13 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 17 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.20 -2.61 7.68 -39.01 -0.30 -2.91 16 22 C 0.12 1.57 11.17 -17.61 -0.20 1.37 16 23 N -0.47 -7.20 7.86 -12.41 -0.10 -7.30 16 24 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 0.56 8.12 -51.93 -0.42 0.13 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.42 2.80 8.70 -40.82 -0.36 2.45 16 28 H 0.15 2.03 7.87 -52.48 -0.41 1.62 16 29 H 0.05 0.68 7.26 -51.93 -0.38 0.30 16 30 H 0.08 1.03 4.89 -51.93 -0.25 0.77 16 31 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 32 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.05 1.29 7.50 -51.93 -0.39 0.90 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.16 1.85 4.17 -52.49 -0.22 1.64 16 36 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 312.85 15.07 4.71 4.71 Total: -1.00 -37.23 312.85 -6.50 -43.73 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.08 Total: -0.42 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -2.34 Total: 8.57 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.05 Total: -52.62 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.17 Total: -20.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -37.23 -6.50 -43.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528167661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.523 kcal (2) G-P(sol) polarization free energy of solvation -37.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds