Wall clock time and date at job start Thu Apr 9 2020 13:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99868 * 2 1 4 4 N 1.46501 * 109.46881 * 124.99447 * 3 2 1 5 5 C 1.46498 * 120.00272 * 269.99658 * 4 3 2 6 6 C 1.50703 * 109.47157 * 270.00459 * 5 4 3 7 7 H 1.07997 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00014 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99963 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00131 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46758 * 60.00165 * 10 8 6 12 12 H 1.48497 * 109.46996 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47001 * 300.00029 * 10 8 6 14 14 C 1.38505 * 119.99833 * 90.00168 * 4 3 2 15 15 C 1.39908 * 120.51242 * 4.99337 * 14 4 3 16 16 C 1.39078 * 118.17966 * 179.72474 * 15 14 4 17 17 C 1.48361 * 120.51119 * 180.25521 * 16 15 14 18 18 O 1.21401 * 119.99672 * 0.02562 * 17 16 15 19 19 O 1.34637 * 120.00329 * 179.97438 * 17 16 15 20 20 C 1.45199 * 117.00086 * 179.97438 * 19 17 16 21 21 N 1.33361 * 118.97934 * 0.27853 * 16 15 14 22 22 C 1.31517 * 120.93663 * 359.97438 * 21 16 15 23 23 N 1.31884 * 122.01510 * 359.97438 * 22 21 16 24 24 H 1.07992 * 120.00030 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00128 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.99893 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47170 * 4.99529 * 3 2 1 28 28 H 1.08997 * 109.47139 * 244.99206 * 3 2 1 29 29 H 1.09000 * 109.47039 * 30.00294 * 5 4 3 30 30 H 1.08995 * 109.47496 * 150.00109 * 5 4 3 31 31 H 0.96997 * 120.00077 * 180.02562 * 9 8 6 32 32 H 1.08002 * 120.91252 * 0.02562 * 15 14 4 33 33 H 1.08998 * 109.46733 * 60.00871 * 20 19 17 34 34 H 1.09003 * 109.46904 * 180.02562 * 20 19 17 35 35 H 1.09000 * 109.47381 * 300.00338 * 20 19 17 36 36 H 1.07991 * 118.99822 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5587 1.8651 2.4249 6 6 2.8441 3.3438 2.4804 7 1 3.3039 3.8371 1.6368 8 6 2.5182 4.0670 3.6081 9 7 1.9578 3.4664 4.6352 10 14 2.8726 5.8998 3.6772 11 1 2.1377 6.5874 2.5852 12 1 2.4304 6.4403 4.9877 13 1 4.3306 6.1285 3.5132 14 6 4.2843 0.8534 0.9785 15 6 4.7441 0.4387 -0.2762 16 6 6.0504 -0.0281 -0.3756 17 6 6.5930 -0.4755 -1.6819 18 8 5.8954 -0.4355 -2.6747 19 8 7.8593 -0.9251 -1.7666 20 6 8.3228 -1.3469 -3.0764 21 7 6.8077 -0.0677 0.7214 22 6 6.3353 0.3270 1.8837 23 7 5.1033 0.7770 2.0213 24 1 -0.5400 -0.9352 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 1.4886 1.6968 2.5459 30 1 3.0987 1.3605 3.2260 31 1 1.7282 3.9752 5.4285 32 1 4.1037 0.4844 -1.1447 33 1 8.2628 -0.5085 -3.7703 34 1 9.3563 -1.6858 -3.0042 35 1 7.6975 -2.1632 -3.4377 36 1 6.9757 0.2811 2.7519 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603382735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:36 Heat of formation + Delta-G solvation = 2.302767 kcal Electronic energy + Delta-G solvation = -20967.978982 eV Core-core repulsion = 17646.920152 eV Total energy + Delta-G solvation = -3321.058830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90475 -39.89065 -37.14104 -36.52993 -33.82322 -32.96321 -32.37699 -30.71650 -28.28455 -27.59201 -25.77787 -24.85601 -23.20331 -22.32760 -20.63121 -19.71558 -18.26737 -17.43066 -16.70507 -16.46365 -16.33079 -15.78810 -15.46600 -14.78014 -14.63137 -14.41916 -14.21012 -13.79064 -13.52540 -13.21561 -12.94014 -12.42360 -12.21654 -11.72835 -11.38016 -11.30464 -10.97818 -10.88131 -10.87346 -10.70266 -10.64349 -10.35487 -10.19128 -9.78429 -9.45991 -9.22746 -8.77092 -8.49848 -7.30640 -6.11063 -4.17790 0.74776 1.63466 2.35418 2.51285 2.63754 3.27002 3.31844 3.34407 3.61477 4.24585 4.29996 4.37865 4.73316 4.95979 4.97516 5.05112 5.16143 5.20500 5.22597 5.33564 5.35649 5.52718 5.69119 5.76322 5.97005 6.11199 6.18045 6.48528 6.74670 6.80352 6.90600 7.21617 7.36332 7.60613 7.74597 7.93462 8.01516 8.12518 8.68194 8.86534 9.47167 10.95484 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.004966 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.293862 B = 5637.202836 C = 6544.598065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.169 4.169 3 C 0.143 3.857 4 N -0.560 5.560 5 C 0.250 3.750 6 C -0.530 4.530 7 H 0.056 0.944 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.450 3.550 15 C -0.239 4.239 16 C 0.160 3.840 17 C 0.529 3.471 18 O -0.498 6.498 19 O -0.332 6.332 20 C 0.033 3.967 21 N -0.544 5.544 22 C 0.336 3.664 23 N -0.540 5.540 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.265 0.735 32 H 0.150 0.850 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.495 -8.523 -11.232 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.189 4.189 3 C 0.019 3.981 4 N -0.266 5.266 5 C 0.132 3.868 6 C -0.569 4.569 7 H 0.074 0.926 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.203 3.797 15 C -0.270 4.270 16 C 0.019 3.981 17 C 0.371 3.629 18 O -0.385 6.385 19 O -0.247 6.247 20 C -0.061 4.061 21 N -0.267 5.267 22 C 0.045 3.955 23 N -0.264 5.264 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.574 -8.436 -10.584 14.638 hybrid contribution -0.342 1.038 -0.714 1.305 sum 5.233 -7.399 -11.298 14.483 Atomic orbital electron populations 1.23823 0.95724 1.01890 1.00159 1.23374 0.96393 0.98887 1.00205 1.20680 0.92338 0.95789 0.89275 1.47273 1.06218 1.58945 1.14211 1.19463 0.95651 0.93826 0.77909 1.21359 1.41108 0.93130 1.01329 0.92591 1.24890 0.94906 0.98662 0.95263 1.69917 1.41588 1.36314 1.05202 0.86573 0.78836 0.84883 0.77219 1.20284 1.21115 1.20188 1.18523 0.87013 0.86459 0.87726 1.22117 0.97107 1.08609 0.99178 1.19766 0.90480 0.96936 0.90961 1.20943 0.80121 0.73915 0.87911 1.90824 1.59455 1.51106 1.37079 1.86695 1.29116 1.73964 1.34912 1.23332 1.00377 1.00256 0.82128 1.68339 1.37475 1.21766 0.99111 1.24682 0.88997 0.87749 0.94025 1.68099 1.05465 1.20405 1.32409 0.88612 0.88182 0.87697 0.88706 0.90302 0.94793 0.92773 0.92557 0.83274 0.91822 0.87880 0.91852 0.78629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 14.32 29.01 0.42 -1.90 16 2 C -0.17 -2.46 9.85 -36.02 -0.35 -2.81 16 3 C 0.14 2.33 5.71 -5.19 -0.03 2.30 16 4 N -0.56 -11.36 2.54 -176.38 -0.45 -11.81 16 5 C 0.25 6.12 5.23 -5.19 -0.03 6.10 16 6 C -0.53 -14.22 9.39 -34.44 -0.32 -14.54 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 10 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 14 C 0.45 8.91 7.39 -154.86 -1.14 7.76 16 15 C -0.24 -4.16 8.87 -38.65 -0.34 -4.51 16 16 C 0.16 2.75 6.78 -82.72 -0.56 2.19 16 17 C 0.53 8.34 7.97 34.90 0.28 8.61 16 18 O -0.50 -8.25 16.20 -19.19 -0.31 -8.56 16 19 O -0.33 -4.61 10.42 -40.32 -0.42 -5.03 16 20 C 0.03 0.31 10.56 101.05 1.07 1.37 16 21 N -0.54 -9.37 10.25 -11.23 -0.12 -9.49 16 22 C 0.34 5.77 12.27 -92.31 -1.13 4.64 16 23 N -0.54 -11.02 9.21 -13.82 -0.13 -11.14 16 24 H 0.10 1.08 8.06 -52.49 -0.42 0.65 16 25 H 0.10 1.26 7.84 -52.49 -0.41 0.85 16 26 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.09 1.57 7.72 -51.93 -0.40 1.17 16 28 H 0.08 1.15 6.05 -51.93 -0.31 0.83 16 29 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.05 1.46 7.33 -51.93 -0.38 1.08 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.15 2.37 5.84 -52.49 -0.31 2.06 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.20 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -30.94 324.13 -7.39 -38.32 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.31 Total: 0.41 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -2.25 Total: 10.90 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.05 Total: -57.05 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.73 Total: -13.59 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.94 -7.39 -38.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603382735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.626 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds