Wall clock time and date at job start Thu Apr 9 2020 13:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99868 * 2 1 4 4 N 1.46501 * 109.46881 * 124.99447 * 3 2 1 5 5 C 1.46498 * 120.00272 * 269.99658 * 4 3 2 6 6 C 1.50703 * 109.47157 * 270.00459 * 5 4 3 7 7 H 1.07997 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00014 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99963 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00131 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46758 * 60.00165 * 10 8 6 12 12 H 1.48497 * 109.46996 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47001 * 300.00029 * 10 8 6 14 14 C 1.38505 * 119.99833 * 90.00168 * 4 3 2 15 15 C 1.39908 * 120.51242 * 4.99337 * 14 4 3 16 16 C 1.39078 * 118.17966 * 179.72474 * 15 14 4 17 17 C 1.48361 * 120.51119 * 180.25521 * 16 15 14 18 18 O 1.21401 * 119.99672 * 0.02562 * 17 16 15 19 19 O 1.34637 * 120.00329 * 179.97438 * 17 16 15 20 20 C 1.45199 * 117.00086 * 179.97438 * 19 17 16 21 21 N 1.33361 * 118.97934 * 0.27853 * 16 15 14 22 22 C 1.31517 * 120.93663 * 359.97438 * 21 16 15 23 23 N 1.31884 * 122.01510 * 359.97438 * 22 21 16 24 24 H 1.07992 * 120.00030 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00128 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.99893 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47170 * 4.99529 * 3 2 1 28 28 H 1.08997 * 109.47139 * 244.99206 * 3 2 1 29 29 H 1.09000 * 109.47039 * 30.00294 * 5 4 3 30 30 H 1.08995 * 109.47496 * 150.00109 * 5 4 3 31 31 H 0.96997 * 120.00077 * 180.02562 * 9 8 6 32 32 H 1.08002 * 120.91252 * 0.02562 * 15 14 4 33 33 H 1.08998 * 109.46733 * 60.00871 * 20 19 17 34 34 H 1.09003 * 109.46904 * 180.02562 * 20 19 17 35 35 H 1.09000 * 109.47381 * 300.00338 * 20 19 17 36 36 H 1.07991 * 118.99822 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5587 1.8651 2.4249 6 6 2.8441 3.3438 2.4804 7 1 3.3039 3.8371 1.6368 8 6 2.5182 4.0670 3.6081 9 7 1.9578 3.4664 4.6352 10 14 2.8726 5.8998 3.6772 11 1 2.1377 6.5874 2.5852 12 1 2.4304 6.4403 4.9877 13 1 4.3306 6.1285 3.5132 14 6 4.2843 0.8534 0.9785 15 6 4.7441 0.4387 -0.2762 16 6 6.0504 -0.0281 -0.3756 17 6 6.5930 -0.4755 -1.6819 18 8 5.8954 -0.4355 -2.6747 19 8 7.8593 -0.9251 -1.7666 20 6 8.3228 -1.3469 -3.0764 21 7 6.8077 -0.0677 0.7214 22 6 6.3353 0.3270 1.8837 23 7 5.1033 0.7770 2.0213 24 1 -0.5400 -0.9352 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 1.4886 1.6968 2.5459 30 1 3.0987 1.3605 3.2260 31 1 1.7282 3.9752 5.4285 32 1 4.1037 0.4844 -1.1447 33 1 8.2628 -0.5085 -3.7703 34 1 9.3563 -1.6858 -3.0042 35 1 7.6975 -2.1632 -3.4377 36 1 6.9757 0.2811 2.7519 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603382735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:35 Heat of formation + Delta-G solvation = -14.364523 kcal Electronic energy + Delta-G solvation = -20968.701730 eV Core-core repulsion = 17646.920152 eV Total energy + Delta-G solvation = -3321.781577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.23550 -41.13612 -38.59686 -37.66215 -35.22655 -34.81387 -33.76368 -32.25870 -29.64055 -28.86814 -27.20699 -26.26488 -24.80822 -23.79360 -21.97737 -20.88805 -19.54350 -18.90467 -18.44715 -17.84095 -17.55698 -17.13730 -16.75222 -16.56233 -16.06902 -15.74217 -15.54632 -15.13330 -14.67404 -14.48890 -14.27349 -14.11893 -13.31394 -13.17472 -13.04122 -12.77831 -12.59881 -12.54152 -12.19501 -12.07261 -11.98687 -11.84562 -11.71263 -11.56700 -11.00886 -10.60909 -10.36981 -10.20675 -8.89137 -8.15779 -6.32788 -0.59439 0.22045 1.20208 1.34974 1.39952 1.40586 1.41664 1.49468 2.18322 2.41551 2.91006 3.02953 3.11426 3.40143 3.60671 3.88199 3.99222 4.12495 4.24763 4.30314 4.35430 4.37799 4.47117 4.72056 4.77834 4.96911 5.00283 5.07779 5.17892 5.36752 5.61086 5.65715 5.72686 5.82477 6.07289 6.22705 6.36308 6.57019 6.77426 7.27678 7.37228 8.87208 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.004966 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.293862 B = 5637.202836 C = 6544.598065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.187 4.187 3 C 0.142 3.858 4 N -0.571 5.571 5 C 0.272 3.728 6 C -0.539 4.539 7 H 0.048 0.952 8 C 0.018 3.982 9 N -0.923 5.923 10 Si 0.959 3.041 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.435 3.565 15 C -0.234 4.234 16 C 0.156 3.844 17 C 0.534 3.466 18 O -0.509 6.509 19 O -0.339 6.339 20 C 0.025 3.975 21 N -0.541 5.541 22 C 0.336 3.664 23 N -0.578 5.578 24 H 0.117 0.883 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.018 0.982 30 H 0.023 0.977 31 H 0.267 0.733 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.069 0.931 36 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 -8.631 -12.575 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.206 4.206 3 C 0.020 3.980 4 N -0.278 5.278 5 C 0.151 3.849 6 C -0.578 4.578 7 H 0.067 0.933 8 C -0.182 4.182 9 N -0.562 5.562 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.203 1.203 14 C 0.189 3.811 15 C -0.264 4.264 16 C 0.014 3.986 17 C 0.376 3.624 18 O -0.396 6.396 19 O -0.254 6.254 20 C -0.068 4.068 21 N -0.264 5.264 22 C 0.046 3.954 23 N -0.303 5.303 24 H 0.136 0.864 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.181 0.819 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.088 0.912 36 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.391 -8.567 -11.967 16.045 hybrid contribution -0.506 0.977 -0.357 1.157 sum 5.885 -7.591 -12.324 15.624 Atomic orbital electron populations 1.24060 0.95258 1.03109 0.97577 1.23254 0.96881 0.97983 1.02518 1.20829 0.91979 0.96652 0.88580 1.47130 1.07219 1.59699 1.13742 1.18856 0.94022 0.92589 0.79437 1.21597 1.40721 0.94389 1.01108 0.93333 1.25670 0.94698 1.02884 0.94926 1.70024 1.42548 1.37925 1.05737 0.85598 0.78469 0.79895 0.77606 1.19260 1.20479 1.20272 1.18744 0.86797 0.86927 0.88629 1.22138 0.97510 1.08181 0.98559 1.20101 0.90466 0.96317 0.91760 1.20642 0.80801 0.73923 0.87021 1.90816 1.59933 1.51719 1.37168 1.86669 1.27743 1.73422 1.37540 1.23737 1.02160 1.00660 0.80240 1.68433 1.37339 1.21427 0.99166 1.25300 0.88393 0.86638 0.95046 1.68102 1.06859 1.21812 1.33481 0.86444 0.87862 0.87569 0.89439 0.88623 0.96401 0.95862 0.92424 0.81874 0.91340 0.84596 0.91183 0.75549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 14.32 67.78 0.97 -3.03 16 2 C -0.19 -5.33 9.85 25.65 0.25 -5.07 16 3 C 0.14 4.62 5.71 85.63 0.49 5.11 16 4 N -0.57 -23.56 2.54 -711.93 -1.81 -25.37 16 5 C 0.27 13.74 5.23 85.63 0.45 14.19 16 6 C -0.54 -29.43 9.39 25.60 0.24 -29.19 16 7 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 8 C 0.02 0.99 5.46 84.65 0.46 1.45 16 9 N -0.92 -53.27 13.29 21.45 0.28 -52.98 16 10 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.44 17.38 7.39 133.30 0.99 18.37 16 15 C -0.23 -8.01 8.87 22.88 0.20 -7.80 16 16 C 0.16 5.18 6.78 41.81 0.28 5.46 16 17 C 0.53 16.00 7.97 70.52 0.56 16.56 16 18 O -0.51 -16.03 16.20 20.16 0.33 -15.70 16 19 O -0.34 -8.71 10.42 -55.46 -0.58 -9.29 16 20 C 0.02 0.39 10.56 113.37 1.20 1.59 16 21 N -0.54 -18.06 10.25 -189.46 -1.94 -20.00 16 22 C 0.34 11.34 12.27 180.94 2.22 13.56 16 23 N -0.58 -23.85 9.21 -197.64 -1.82 -25.67 16 24 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 25 H 0.10 2.47 7.84 -2.91 -0.02 2.45 16 26 H 0.11 2.99 8.06 -2.91 -0.02 2.96 16 27 H 0.09 2.93 7.72 -2.39 -0.02 2.91 16 28 H 0.10 2.73 6.05 -2.39 -0.01 2.71 16 29 H 0.02 0.95 8.07 -2.39 -0.02 0.93 16 30 H 0.02 1.31 7.33 -2.39 -0.02 1.29 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.16 5.01 5.84 -2.91 -0.02 5.00 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.23 5.84 8.06 -2.92 -0.02 5.82 16 Total: -1.00 -66.43 324.13 5.89 -60.54 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.09 Total: 11.86 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: 8.32 Total: 31.20 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -5.29 Total: -124.02 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.25 Total: -24.99 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.43 5.89 -60.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603382735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.171 kcal (2) G-P(sol) polarization free energy of solvation -66.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds