Wall clock time and date at job start Thu Apr 9 2020 13:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46742 * 94.53535 * 3 2 1 5 5 H 1.48500 * 109.47460 * 214.53151 * 3 2 1 6 6 H 1.48499 * 109.46928 * 334.53536 * 3 2 1 7 7 C 1.37886 * 120.00030 * 180.28070 * 2 1 3 8 8 H 1.08002 * 119.99771 * 6.61783 * 7 2 1 9 9 C 1.50698 * 120.00006 * 186.61954 * 7 2 1 10 10 H 1.08995 * 109.47523 * 326.94485 * 9 7 2 11 11 C 1.52999 * 109.47080 * 206.93845 * 9 7 2 12 12 C 1.50700 * 109.47010 * 65.00685 * 11 9 7 13 13 O 1.21282 * 120.00069 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00194 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.52993 * 109.47066 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47399 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47553 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.46664 * 86.94374 * 9 7 2 20 20 C 1.38233 * 119.99857 * 57.92474 * 19 9 7 21 21 C 1.38240 * 119.99757 * 179.78388 * 20 19 9 22 22 C 1.38239 * 119.99979 * 0.44453 * 21 20 19 23 23 C 1.38242 * 120.00017 * 359.80708 * 22 21 20 24 24 C 1.38230 * 119.99928 * 238.19148 * 19 9 7 25 25 H 0.96994 * 119.99996 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47081 * 185.00338 * 11 9 7 27 27 H 1.09000 * 109.47450 * 305.00596 * 11 9 7 28 28 H 0.96995 * 119.99984 * 359.97438 * 14 12 11 29 29 H 1.09000 * 109.46885 * 299.99228 * 15 14 12 30 30 H 1.09000 * 109.47350 * 59.99305 * 15 14 12 31 31 H 1.09000 * 109.46918 * 299.99551 * 16 15 14 32 32 H 1.09005 * 109.47577 * 59.99242 * 16 15 14 33 33 H 1.09000 * 109.46973 * 299.99829 * 17 16 15 34 34 H 1.09000 * 109.46929 * 59.99702 * 17 16 15 35 35 H 0.96700 * 114.00525 * 180.02562 * 18 17 16 36 36 H 1.07994 * 120.00554 * 359.97438 * 20 19 9 37 37 H 1.07996 * 120.00426 * 180.26872 * 21 20 19 38 38 H 1.08000 * 120.00114 * 179.82966 * 22 21 20 39 39 H 1.07993 * 120.00100 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.00162 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5925 1.9909 1.3957 5 1 3.4955 1.4697 -0.7936 6 1 1.4019 2.6784 -0.6020 7 6 2.0045 -1.1941 -0.0059 8 1 1.4699 -2.1258 -0.1182 9 6 3.5040 -1.1992 0.1446 10 1 3.9190 -0.3058 -0.3219 11 6 4.0803 -2.4435 -0.5339 12 6 3.8289 -2.3685 -2.0179 13 8 3.2457 -1.4140 -2.4866 14 7 4.2513 -3.3625 -2.8241 15 6 4.0073 -3.2893 -4.2668 16 6 4.5835 -4.5336 -4.9453 17 6 4.3282 -4.4575 -6.4519 18 8 4.8670 -5.6193 -7.0857 19 6 3.8618 -1.2140 1.6084 20 6 3.4059 -2.2350 2.4211 21 6 3.7379 -2.2510 3.7630 22 6 4.5181 -1.2409 4.2940 23 6 4.9697 -0.2170 3.4823 24 6 4.6413 -0.2035 2.1396 25 1 -0.4850 0.8400 0.0004 26 1 5.1534 -2.4938 -0.3493 27 1 3.5998 -3.3339 -0.1285 28 1 4.7174 -4.1261 -2.4492 29 1 2.9343 -3.2383 -4.4517 30 1 4.4885 -2.3991 -4.6720 31 1 5.6565 -4.5842 -4.7604 32 1 4.1027 -5.4240 -4.5401 33 1 3.2552 -4.4071 -6.6365 34 1 4.8088 -3.5671 -6.8573 35 1 4.7415 -5.6384 -8.0443 36 1 2.7930 -3.0219 2.0072 37 1 3.3854 -3.0509 4.3970 38 1 4.7752 -1.2518 5.3429 39 1 5.5796 0.5719 3.8971 40 1 4.9943 0.5963 1.5055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354392182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:45 Heat of formation + Delta-G solvation = -74.267524 kcal Electronic energy + Delta-G solvation = -21071.861990 eV Core-core repulsion = 17851.023166 eV Total energy + Delta-G solvation = -3220.838823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.25186 -38.39478 -37.32867 -35.00775 -33.96685 -31.77130 -31.36142 -30.19955 -28.96166 -26.37351 -24.73326 -22.56738 -21.87048 -21.63836 -20.20579 -19.10611 -17.65704 -16.95010 -16.48474 -16.04610 -15.80577 -15.50315 -14.65166 -14.53017 -14.17410 -14.00077 -13.63789 -13.34229 -12.95691 -12.71155 -12.60026 -12.28567 -12.00149 -11.92048 -11.80156 -11.38274 -11.36931 -11.04083 -10.79073 -10.49406 -10.34061 -10.21625 -9.88271 -9.59403 -9.15201 -8.93899 -8.62640 -8.42821 -8.20281 -7.80980 -5.97545 -3.93200 2.10150 2.15802 3.41747 3.45519 3.47153 3.50310 3.51260 4.16409 4.53249 4.58017 4.77059 4.93623 5.06163 5.30534 5.37134 5.41493 5.52420 5.56639 5.58958 5.68390 5.70702 5.94207 5.98289 6.02933 6.07400 6.12709 6.24818 6.33991 6.59972 6.70501 6.83540 6.85640 7.05765 7.15026 7.27305 7.34348 7.60322 7.72710 7.83444 8.02454 8.54284 8.99114 9.02716 9.66936 11.15661 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.004517 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.760369 B = 6196.842311 C = 7134.538919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.083 3.917 3 Si 0.867 3.133 4 H -0.274 1.274 5 H -0.261 1.261 6 H -0.292 1.292 7 C -0.482 4.482 8 H 0.071 0.929 9 C 0.047 3.953 10 H 0.054 0.946 11 C -0.115 4.115 12 C 0.513 3.487 13 O -0.501 6.501 14 N -0.748 5.748 15 C 0.124 3.876 16 C -0.131 4.131 17 C 0.078 3.922 18 O -0.577 6.577 19 C -0.039 4.039 20 C -0.101 4.101 21 C -0.126 4.126 22 C -0.150 4.150 23 C -0.124 4.124 24 C -0.139 4.139 25 H 0.262 0.738 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.394 0.606 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.380 0.620 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.504 -8.333 -4.867 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.119 4.119 3 Si 0.696 3.304 4 H -0.200 1.200 5 H -0.186 1.186 6 H -0.218 1.218 7 C -0.519 4.519 8 H 0.089 0.911 9 C 0.028 3.972 10 H 0.072 0.928 11 C -0.155 4.155 12 C 0.299 3.701 13 O -0.373 6.373 14 N -0.404 5.404 15 C 0.000 4.000 16 C -0.169 4.169 17 C 0.000 4.000 18 O -0.382 6.382 19 C -0.040 4.040 20 C -0.119 4.119 21 C -0.145 4.145 22 C -0.168 4.168 23 C -0.143 4.143 24 C -0.157 4.157 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.227 0.773 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.227 0.773 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.035 -7.605 -4.601 14.170 hybrid contribution 0.260 0.787 -0.352 0.901 sum 11.295 -6.818 -4.953 14.093 Atomic orbital electron populations 1.69887 1.06326 1.26804 1.50711 1.24866 0.94490 0.98760 0.93753 0.86957 0.80784 0.84184 0.78511 1.20023 1.18618 1.21826 1.20598 0.87820 0.94574 1.48908 0.91062 1.18248 0.98074 0.94154 0.86704 0.92840 1.21616 1.00493 1.02345 0.91072 1.20844 0.78068 0.81905 0.89234 1.90741 1.37930 1.32198 1.76397 1.46099 1.62514 1.24910 1.06894 1.21027 1.00879 0.96803 0.81299 1.21680 1.02423 0.98849 0.93922 1.22053 0.97505 0.87433 0.93010 1.86450 1.82653 1.43910 1.25204 1.20771 0.91555 0.92635 0.99003 1.20955 0.98816 0.99209 0.92912 1.21060 0.99139 0.98648 0.95608 1.20862 1.01065 0.96026 0.98829 1.20956 1.00840 0.98352 0.94107 1.21060 1.00119 0.99336 0.95211 0.92852 0.91236 0.89697 0.77256 0.91560 0.91899 0.90749 0.90606 0.93134 0.93290 0.77309 0.86220 0.87151 0.87394 0.87347 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 2 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.87 22.86 26.62 -169.99 -4.52 18.33 16 4 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.26 -6.72 6.29 56.52 0.36 -6.37 16 6 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 7 C -0.48 -13.34 6.97 -34.44 -0.24 -13.58 16 8 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 9 C 0.05 1.09 1.21 -92.92 -0.11 0.98 16 10 H 0.05 1.33 4.88 -51.93 -0.25 1.07 16 11 C -0.12 -2.13 4.93 -27.88 -0.14 -2.27 16 12 C 0.51 10.00 7.58 -10.99 -0.08 9.91 16 13 O -0.50 -12.33 14.98 5.56 0.08 -12.25 16 14 N -0.75 -10.83 5.56 -60.29 -0.33 -11.16 16 15 C 0.12 1.62 5.67 -4.04 -0.02 1.60 16 16 C -0.13 -1.32 5.70 -26.73 -0.15 -1.47 16 17 C 0.08 0.71 7.05 37.16 0.26 0.97 16 18 O -0.58 -5.33 13.66 -35.23 -0.48 -5.81 16 19 C -0.04 -0.82 4.52 -104.62 -0.47 -1.30 16 20 C -0.10 -1.97 8.86 -39.58 -0.35 -2.33 16 21 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 22 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 23 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 24 C -0.14 -2.77 9.08 -39.58 -0.36 -3.13 16 25 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 1.46 7.69 -51.93 -0.40 1.06 16 28 H 0.39 4.40 8.47 -40.82 -0.35 4.05 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.38 1.73 9.12 45.56 0.42 2.15 16 36 H 0.12 2.30 7.72 -52.49 -0.41 1.89 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.11 2.10 7.91 -52.49 -0.42 1.68 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -35.54 335.78 -7.62 -43.16 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.24 Total: 6.39 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.96 Total: -16.25 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.44 Total: -38.63 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.40 Total: -18.06 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.52 Total: 18.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.54 -7.62 -43.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354392182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.108 kcal (2) G-P(sol) polarization free energy of solvation -35.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds