Wall clock time and date at job start Thu Apr 9 2020 13:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46653 * 2 1 4 4 C 1.52998 * 109.46943 * 240.00555 * 2 1 3 5 5 C 1.52999 * 109.47472 * 64.99691 * 4 2 1 6 6 O 1.42906 * 109.47242 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47236 * 120.00102 * 2 1 3 8 8 N 1.46502 * 109.47270 * 295.00038 * 7 2 1 9 9 C 1.34777 * 119.99743 * 180.02562 * 8 7 2 10 10 O 1.21578 * 120.00477 * 359.97438 * 9 8 7 11 11 C 1.47643 * 119.99646 * 180.02562 * 9 8 7 12 12 C 1.40013 * 119.89659 * 359.72253 * 11 9 8 13 13 C 1.36319 * 120.11037 * 179.71841 * 12 11 9 14 14 C 1.40894 * 119.88499 * 0.57717 * 13 12 11 15 15 C 1.41108 * 120.10015 * 179.67361 * 14 13 12 16 16 H 1.08007 * 120.00106 * 204.64920 * 15 14 13 17 17 C 1.40226 * 119.99974 * 24.65058 * 15 14 13 18 18 N 1.30645 * 120.00157 * 17.87260 * 17 15 14 19 19 Si 1.86805 * 119.99698 * 197.87424 * 17 15 14 20 20 H 1.48494 * 109.47498 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.46909 * 120.00103 * 19 17 15 22 22 H 1.48500 * 109.46982 * 239.99881 * 19 17 15 23 23 C 1.40879 * 119.79603 * 359.69879 * 14 13 12 24 24 C 1.36325 * 119.89507 * 359.97438 * 23 14 13 25 25 H 1.09003 * 109.46653 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47278 * 299.99327 * 1 2 3 27 27 H 1.08994 * 109.47346 * 59.99749 * 1 2 3 28 28 H 1.09003 * 109.46913 * 185.00034 * 4 2 1 29 29 H 1.08997 * 109.47206 * 304.99131 * 4 2 1 30 30 H 1.09002 * 109.46988 * 299.99669 * 5 4 2 31 31 H 1.09001 * 109.47205 * 60.00025 * 5 4 2 32 32 H 0.96697 * 113.99618 * 179.97438 * 6 5 4 33 33 H 1.08991 * 109.47515 * 55.00483 * 7 2 1 34 34 H 1.09002 * 109.46789 * 175.00262 * 7 2 1 35 35 H 0.96995 * 120.00168 * 0.02562 * 8 7 2 36 36 H 1.07996 * 119.94442 * 0.02562 * 12 11 9 37 37 H 1.07993 * 120.05932 * 180.25087 * 13 12 11 38 38 H 0.97001 * 120.00063 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.05684 * 179.97438 * 23 14 13 40 40 H 1.07998 * 119.95092 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6352 0.0691 -2.4953 6 8 2.1120 -0.6042 -3.6622 7 6 2.0401 -0.7212 1.2492 8 7 1.6525 0.0353 2.4424 9 6 1.9966 -0.4132 3.6658 10 8 2.6281 -1.4458 3.7794 11 6 1.6055 0.3490 4.8683 12 6 0.8823 1.5404 4.7348 13 6 0.5140 2.2446 5.8424 14 6 0.8729 1.7780 7.1225 15 6 0.5000 2.5069 8.2717 16 1 1.0710 2.4077 9.1831 17 6 -0.6121 3.3602 8.2305 18 7 -1.4993 3.2316 7.2802 19 14 -0.8247 4.6808 9.5345 20 1 0.3085 4.6181 10.4920 21 1 -0.8524 6.0166 8.8862 22 1 -2.0998 4.4572 10.2621 23 6 1.6056 0.5817 7.2515 24 6 1.9637 -0.1192 6.1383 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.1263 -0.7994 -1.2056 29 1 1.6055 -1.7197 -1.2952 30 1 0.5488 0.1472 -2.5390 31 1 2.0698 1.0676 -2.4494 32 1 1.8908 -0.1586 -4.4913 33 1 1.6056 -1.7197 1.2951 34 1 3.1264 -0.7994 1.2055 35 1 1.1483 0.8590 2.3518 36 1 0.6115 1.8995 3.7530 37 1 -0.0473 3.1614 5.7387 38 1 -2.2683 3.8220 7.2515 39 1 1.8833 0.2203 8.2306 40 1 2.5250 -1.0366 6.2362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270408776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:20 Heat of formation + Delta-G solvation = -115.355616 kcal Electronic energy + Delta-G solvation = -20530.798218 eV Core-core repulsion = 17308.177682 eV Total energy + Delta-G solvation = -3222.620537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.84555 -39.11356 -38.47556 -36.96690 -35.66926 -34.41899 -32.02579 -31.29744 -29.62491 -28.28178 -27.03494 -24.27957 -23.20955 -22.71723 -21.49309 -20.89494 -19.36824 -18.63658 -18.02885 -17.30041 -16.92470 -16.61841 -16.07773 -15.75922 -15.67045 -15.07022 -15.00187 -14.77920 -14.42314 -14.07700 -13.89033 -13.67683 -13.50969 -13.23267 -13.09912 -12.84910 -12.62147 -12.49561 -12.37397 -12.04818 -11.85430 -11.75918 -11.59216 -11.37109 -11.12056 -10.79237 -10.71256 -10.06255 -9.57370 -9.40248 -8.79481 -6.48092 0.44146 1.14980 1.39061 1.42486 1.55775 2.12548 2.18244 2.37322 2.78665 3.35126 3.69060 3.76126 3.84392 4.18445 4.27258 4.27963 4.31719 4.44473 4.45711 4.55664 4.63243 4.75378 4.82070 4.92458 5.00240 5.02177 5.03950 5.08852 5.16131 5.29957 5.32765 5.40924 5.56982 5.60747 5.82427 5.94703 5.99568 6.22849 6.54070 6.71699 6.77342 6.89148 6.92698 7.44677 8.15959 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028489 B = 0.003123 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.601074 B = 8964.675545 C = 9760.187667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 H 0.092 0.908 4 C -0.112 4.112 5 C 0.076 3.924 6 O -0.599 6.599 7 C 0.126 3.874 8 N -0.722 5.722 9 C 0.569 3.431 10 O -0.609 6.609 11 C -0.294 4.294 12 C -0.052 4.052 13 C -0.198 4.198 14 C 0.101 3.899 15 C -0.473 4.473 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.797 5.797 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.259 1.259 22 H -0.264 1.264 23 C -0.254 4.254 24 C -0.034 4.034 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.398 0.602 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.408 0.592 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.297 0.703 39 H 0.103 0.897 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 2.558 -15.208 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.110 0.890 4 C -0.150 4.150 5 C -0.002 4.002 6 O -0.408 6.408 7 C 0.003 3.997 8 N -0.374 5.374 9 C 0.363 3.637 10 O -0.494 6.494 11 C -0.299 4.299 12 C -0.071 4.071 13 C -0.217 4.217 14 C 0.098 3.902 15 C -0.500 4.500 16 H 0.102 0.898 17 C -0.181 4.181 18 N -0.420 5.420 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.183 1.183 22 H -0.189 1.189 23 C -0.274 4.274 24 C -0.053 4.053 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.248 0.752 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.245 0.755 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.233 1.504 -14.825 14.903 hybrid contribution -0.525 0.892 0.349 1.092 sum -0.758 2.396 -14.477 14.693 Atomic orbital electron populations 1.21955 0.93810 1.02437 1.02754 1.21188 0.97038 1.00370 0.91975 0.88997 1.21418 1.01536 0.99690 0.92346 1.22251 0.98537 0.94887 0.84485 1.86421 1.81704 1.54929 1.17744 1.21368 0.99365 0.95173 0.83821 1.45746 1.58458 1.28304 1.04906 1.18436 0.77578 0.83679 0.84050 1.90611 1.44087 1.26976 1.87695 1.19188 1.16340 1.01982 0.92347 1.20720 0.95044 0.93174 0.98187 1.21021 1.06697 1.02008 0.91957 1.18147 0.88255 0.89728 0.94106 1.20131 1.10502 1.20951 0.98388 0.89765 1.26921 0.93633 0.98628 0.98928 1.69761 1.08016 1.33021 1.31229 0.85070 0.79351 0.77092 0.77767 1.18163 1.18336 1.18862 1.20857 1.11087 0.98252 0.97156 1.20515 0.95371 0.97273 0.92153 0.92788 0.92735 0.90209 0.91687 0.91621 0.91955 0.92435 0.75237 0.92889 0.92675 0.75457 0.85734 0.86673 0.89145 0.87864 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.82 71.98 0.64 -1.93 16 2 C -0.09 -1.58 2.42 -10.80 -0.03 -1.61 16 3 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -1.96 5.05 30.59 0.15 -1.80 16 5 C 0.08 1.05 6.80 71.98 0.49 1.54 16 6 O -0.60 -9.53 13.66 -148.98 -2.04 -11.56 16 7 C 0.13 3.38 5.06 86.38 0.44 3.82 16 8 N -0.72 -23.00 5.23 -466.18 -2.44 -25.44 16 9 C 0.57 24.23 7.76 86.73 0.67 24.91 16 10 O -0.61 -29.73 16.32 -3.96 -0.06 -29.79 16 11 C -0.29 -13.49 5.89 -19.93 -0.12 -13.61 16 12 C -0.05 -2.27 9.47 22.25 0.21 -2.06 16 13 C -0.20 -9.67 8.64 22.47 0.19 -9.47 16 14 C 0.10 5.24 5.58 -21.28 -0.12 5.12 16 15 C -0.47 -23.80 9.04 23.46 0.21 -23.58 16 16 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 17 C 0.04 1.75 5.14 85.35 0.44 2.19 16 18 N -0.80 -37.58 10.95 21.87 0.24 -37.34 16 19 Si 0.99 34.43 29.60 68.60 2.03 36.46 16 20 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 21 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 22 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 23 C -0.25 -12.71 9.73 22.47 0.22 -12.49 16 24 C -0.03 -1.65 9.52 22.25 0.21 -1.44 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 1.00 7.18 -2.39 -0.02 0.99 16 27 H 0.08 1.00 6.56 -2.39 -0.02 0.98 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 0.70 6.57 -2.39 -0.02 0.68 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.40 2.49 9.12 -74.06 -0.68 1.81 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.41 11.08 5.65 -92.71 -0.52 10.56 16 36 H 0.12 4.33 6.37 -2.91 -0.02 4.31 16 37 H 0.12 5.68 6.16 -2.91 -0.02 5.66 16 38 H 0.30 12.36 8.29 -92.71 -0.77 11.59 16 39 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.10 4.80 7.63 -2.91 -0.02 4.78 16 Total: -1.00 -64.70 332.52 1.21 -63.50 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.14 Total: 34.60 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 3.61 Total: -30.42 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -2.20 Total: -62.78 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -2.10 Total: -41.36 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Total: -64.70 1.21 -63.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270408776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.860 kcal (2) G-P(sol) polarization free energy of solvation -64.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds