Wall clock time and date at job start Thu Apr 9 2020 13:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47300 * 2 1 4 4 C 1.36940 * 119.99843 * 265.51014 * 3 2 1 5 5 H 1.08005 * 120.00316 * 146.06694 * 4 3 2 6 6 C 1.38814 * 119.99943 * 326.06422 * 4 3 2 7 7 N 1.31622 * 119.99833 * 156.04283 * 6 4 3 8 8 Si 1.86793 * 119.99921 * 336.04355 * 6 4 3 9 9 H 1.48497 * 109.47411 * 95.41001 * 8 6 4 10 10 H 1.48505 * 109.47333 * 215.40895 * 8 6 4 11 11 H 1.48497 * 109.47365 * 335.40668 * 8 6 4 12 12 C 1.46504 * 120.00462 * 85.22942 * 3 2 1 13 13 C 1.52998 * 109.47221 * 90.00135 * 12 3 2 14 14 C 1.50697 * 109.47479 * 180.02562 * 13 12 3 15 15 C 1.37961 * 120.07498 * 97.21449 * 14 13 12 16 16 C 1.38342 * 120.15290 * 179.97438 * 15 14 13 17 17 C 1.38396 * 120.29897 * 0.04546 * 16 15 14 18 18 C 1.37917 * 120.15036 * 0.02562 * 17 16 15 19 19 C 1.39606 * 120.07588 * 276.94811 * 14 13 12 20 20 C 1.47728 * 120.15026 * 359.97438 * 19 14 13 21 21 O 1.21469 * 119.99980 * 4.00390 * 20 19 14 22 22 O 1.34707 * 120.00104 * 183.99487 * 20 19 14 23 23 C 1.45199 * 117.00322 * 180.02562 * 22 20 19 24 24 H 1.08993 * 109.46933 * 60.00370 * 1 2 3 25 25 H 1.09003 * 109.46829 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47090 * 299.99975 * 1 2 3 27 27 H 1.08999 * 109.47422 * 239.99805 * 2 1 3 28 28 H 1.09010 * 109.47197 * 119.99607 * 2 1 3 29 29 H 0.96998 * 119.99831 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47431 * 210.00517 * 12 3 2 31 31 H 1.09001 * 109.46644 * 330.00482 * 12 3 2 32 32 H 1.09003 * 109.47230 * 300.00505 * 13 12 3 33 33 H 1.09005 * 109.47031 * 59.99828 * 13 12 3 34 34 H 1.08004 * 119.92591 * 0.02562 * 15 14 13 35 35 H 1.07996 * 119.85532 * 180.02562 * 16 15 14 36 36 H 1.08001 * 119.92120 * 179.97438 * 17 16 15 37 37 H 1.08001 * 120.07787 * 179.97438 * 18 17 16 38 38 H 1.08997 * 109.46842 * 59.99952 * 23 22 20 39 39 H 1.08999 * 109.47290 * 180.02562 * 23 22 20 40 40 H 1.09001 * 109.47088 * 300.00474 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3341 1.9957 -1.1823 5 1 2.1633 3.0553 -1.3027 6 6 2.8738 1.2567 -2.2262 7 7 2.7472 1.6797 -3.4661 8 14 3.7797 -0.3378 -1.8710 9 1 2.8461 -1.4823 -2.0246 10 1 4.9086 -0.4886 -2.8239 11 1 4.3046 -0.3101 -0.4822 12 6 2.1631 2.1070 1.2643 13 6 3.5688 1.8806 1.8244 14 6 3.7175 2.6267 3.1252 15 6 3.5384 1.9683 4.3243 16 6 3.6751 2.6516 5.5194 17 6 3.9911 3.9990 5.5212 18 6 4.1715 4.6697 4.3297 19 6 4.0423 3.9844 3.1198 20 6 4.2419 4.6945 1.8398 21 8 4.0526 4.1162 0.7885 22 8 4.6338 5.9833 1.8385 23 6 4.8096 6.6176 0.5443 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.1246 1.1635 -4.1955 30 1 2.0080 3.1721 1.0917 31 1 1.4244 1.7434 1.9786 32 1 3.7239 0.8155 1.9970 33 1 4.3074 2.2441 1.1100 34 1 3.2917 0.9168 4.3300 35 1 3.5342 2.1313 6.4553 36 1 4.0960 4.5265 6.4578 37 1 4.4177 5.7213 4.3324 38 1 3.8661 6.5978 -0.0011 39 1 5.1261 7.6510 0.6861 40 1 5.5689 6.0801 -0.0236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274785916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:53 Heat of formation + Delta-G solvation = -49.445482 kcal Electronic energy + Delta-G solvation = -22135.273287 eV Core-core repulsion = 18915.510829 eV Total energy + Delta-G solvation = -3219.762459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69414 -39.81979 -38.22349 -37.39650 -34.43609 -33.56921 -32.43474 -31.36287 -29.33931 -28.51093 -26.05271 -24.92419 -24.42003 -22.85396 -21.98926 -21.29726 -18.85192 -18.67614 -17.83137 -17.40277 -17.26378 -16.80217 -16.18050 -16.06801 -15.46144 -15.16014 -14.99932 -14.56184 -14.52179 -14.27770 -13.85058 -13.72465 -13.59516 -13.37119 -13.04917 -12.97788 -12.76794 -12.60805 -12.53445 -12.32220 -11.98434 -11.85211 -11.73885 -11.51437 -11.34045 -10.90263 -10.58596 -9.95910 -9.74574 -8.78294 -8.15078 -5.45310 -0.21107 0.43843 1.25371 1.37848 1.48989 1.63635 1.76539 2.43307 2.84173 3.09897 3.35015 3.74680 3.96514 3.98070 4.18657 4.26263 4.29912 4.32672 4.34929 4.50158 4.52991 4.55261 4.66536 4.68473 4.76422 4.81063 4.88027 4.97438 5.07497 5.13231 5.19375 5.27949 5.40829 5.45790 5.51463 5.52988 5.74605 5.98567 6.01368 6.20113 6.84488 7.03705 7.69706 8.07619 9.06407 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.006598 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.457379 B = 4242.965942 C = 5275.544434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.121 3.879 3 N -0.615 5.615 4 C -0.222 4.222 5 H 0.032 0.968 6 C -0.032 4.032 7 N -0.956 5.956 8 Si 0.941 3.059 9 H -0.271 1.271 10 H -0.314 1.314 11 H -0.262 1.262 12 C 0.176 3.824 13 C -0.105 4.105 14 C -0.027 4.027 15 C -0.137 4.137 16 C -0.070 4.070 17 C -0.136 4.136 18 C -0.061 4.061 19 C -0.150 4.150 20 C 0.480 3.520 21 O -0.505 6.505 22 O -0.359 6.359 23 C 0.035 3.965 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.259 0.741 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.149 0.851 38 H 0.048 0.952 39 H 0.142 0.858 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 4.233 22.130 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.004 4.004 3 N -0.338 5.338 4 C -0.352 4.352 5 H 0.050 0.950 6 C -0.226 4.226 7 N -0.602 5.602 8 Si 0.771 3.229 9 H -0.198 1.198 10 H -0.244 1.244 11 H -0.186 1.186 12 C 0.051 3.949 13 C -0.145 4.145 14 C -0.028 4.028 15 C -0.155 4.155 16 C -0.088 4.088 17 C -0.153 4.153 18 C -0.079 4.079 19 C -0.151 4.151 20 C 0.326 3.674 21 O -0.393 6.393 22 O -0.276 6.276 23 C -0.058 4.058 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.183 0.817 36 H 0.183 0.817 37 H 0.167 0.833 38 H 0.067 0.933 39 H 0.160 0.840 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.789 4.064 21.634 22.189 hybrid contribution 0.632 -0.418 -1.361 1.558 sum 3.421 3.646 20.274 20.881 Atomic orbital electron populations 1.22114 0.96857 1.01271 1.00995 1.21300 0.94472 0.85301 0.99295 1.44352 1.74888 1.12137 1.02381 1.18508 1.33811 0.93391 0.89526 0.95016 1.25948 0.99941 1.01844 0.94911 1.70017 1.48547 1.42549 0.99134 0.85897 0.78379 0.80940 0.77668 1.19783 1.24352 1.18620 1.20695 0.93085 0.95135 0.85979 1.21362 1.01272 0.98305 0.93543 1.20137 0.94238 0.92178 0.96256 1.21269 1.01987 1.01318 0.90966 1.21832 0.93824 0.94606 0.98548 1.21535 1.00465 0.94926 0.98406 1.21642 0.94737 1.00855 0.90701 1.19090 1.11092 0.94018 0.90939 1.21936 0.74117 0.80860 0.90534 1.91087 1.46785 1.66595 1.34871 1.86466 1.79297 1.25702 1.36132 1.23433 1.01558 0.98949 0.81894 0.95204 0.91028 0.92187 0.94872 0.91683 0.93243 0.95384 0.92139 0.92077 0.91964 0.83843 0.81736 0.81654 0.83316 0.93320 0.84002 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 10.24 71.98 0.74 -5.06 16 2 C 0.12 5.30 5.09 86.38 0.44 5.74 16 3 N -0.62 -31.11 2.14 -701.98 -1.50 -32.62 16 4 C -0.22 -13.66 9.94 84.03 0.84 -12.83 16 5 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 6 C -0.03 -2.01 5.28 84.86 0.45 -1.56 16 7 N -0.96 -63.77 13.97 21.65 0.30 -63.47 16 8 Si 0.94 49.57 24.99 68.60 1.71 51.28 16 9 H -0.27 -13.29 6.64 99.48 0.66 -12.62 16 10 H -0.31 -16.84 7.11 99.48 0.71 -16.14 16 11 H -0.26 -13.22 7.11 99.48 0.71 -12.52 16 12 C 0.18 7.65 5.24 86.38 0.45 8.11 16 13 C -0.11 -4.20 4.93 29.85 0.15 -4.05 16 14 C -0.03 -0.84 5.17 -19.60 -0.10 -0.94 16 15 C -0.14 -3.11 9.66 22.23 0.21 -2.89 16 16 C -0.07 -1.11 10.04 22.33 0.22 -0.89 16 17 C -0.14 -2.11 10.03 22.23 0.22 -1.89 16 18 C -0.06 -1.33 9.62 22.53 0.22 -1.11 16 19 C -0.15 -4.61 5.87 -20.10 -0.12 -4.73 16 20 C 0.48 17.63 7.80 70.33 0.55 18.18 16 21 O -0.50 -23.56 11.52 19.94 0.23 -23.33 16 22 O -0.36 -10.95 9.83 -56.17 -0.55 -11.51 16 23 C 0.03 0.93 10.56 113.37 1.20 2.13 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.03 1.62 3.13 -2.39 -0.01 1.61 16 28 H 0.06 2.44 8.11 -2.38 -0.02 2.43 16 29 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 30 H 0.03 1.35 6.69 -2.39 -0.02 1.33 16 31 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 32 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 33 H 0.06 3.02 5.81 -2.38 -0.01 3.01 16 34 H 0.14 2.76 8.05 -2.91 -0.02 2.73 16 35 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.15 2.69 7.62 -2.91 -0.02 2.67 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -79.88 329.60 6.63 -73.25 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.98 Total: 8.19 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 5.46 Total: -1.81 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -1.20 Total: -96.08 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.32 Total: -34.84 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 1.71 Total: 51.28 kcal Total: -79.88 6.63 -73.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274785916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.806 kcal (2) G-P(sol) polarization free energy of solvation -79.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds