Wall clock time and date at job start Thu Apr 9 2020 13:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47343 * 2 1 4 4 O 1.42902 * 109.46990 * 240.00090 * 2 1 3 5 5 C 1.53004 * 109.47198 * 120.00052 * 2 1 3 6 6 C 1.52994 * 109.46998 * 184.99808 * 5 2 1 7 7 C 1.53003 * 109.46944 * 180.02562 * 6 5 2 8 8 N 1.46502 * 109.46929 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99709 * 179.97438 * 8 7 6 10 10 O 1.21587 * 120.00246 * 359.97438 * 9 8 7 11 11 C 1.47642 * 119.99735 * 179.97438 * 9 8 7 12 12 C 1.40010 * 119.89811 * 359.72803 * 11 9 8 13 13 C 1.36319 * 120.10893 * 179.75645 * 12 11 9 14 14 C 1.40894 * 119.88977 * 0.51402 * 13 12 11 15 15 C 1.41102 * 120.10328 * 179.71648 * 14 13 12 16 16 H 1.07998 * 120.00323 * 204.65303 * 15 14 13 17 17 C 1.40229 * 120.00114 * 24.65101 * 15 14 13 18 18 N 1.30642 * 119.99611 * 17.86491 * 17 15 14 19 19 Si 1.86798 * 119.99971 * 197.86544 * 17 15 14 20 20 H 1.48504 * 109.47263 * 90.00213 * 19 17 15 21 21 H 1.48499 * 109.47027 * 209.99960 * 19 17 15 22 22 H 1.48499 * 109.47480 * 330.00228 * 19 17 15 23 23 C 1.40894 * 119.79260 * 359.73907 * 14 13 12 24 24 C 1.36320 * 119.89187 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.47432 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46551 * 299.99784 * 1 2 3 27 27 H 1.09000 * 109.47025 * 59.99410 * 1 2 3 28 28 H 0.96695 * 113.99792 * 59.99422 * 4 2 1 29 29 H 1.09003 * 109.46468 * 64.99735 * 5 2 1 30 30 H 1.08995 * 109.46806 * 305.00412 * 5 2 1 31 31 H 1.09000 * 109.47488 * 59.99835 * 6 5 2 32 32 H 1.08998 * 109.47134 * 299.99756 * 6 5 2 33 33 H 1.08997 * 109.47663 * 59.99950 * 7 6 5 34 34 H 1.08998 * 109.46688 * 299.99640 * 7 6 5 35 35 H 0.96994 * 120.00397 * 359.71800 * 8 7 6 36 36 H 1.08001 * 119.94429 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.05647 * 180.22981 * 13 12 11 38 38 H 0.97007 * 120.00058 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.05318 * 179.97438 * 23 14 13 40 40 H 1.07994 * 119.94717 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2493 6 6 3.5648 -0.6133 1.3136 7 6 4.0749 -1.3352 2.5625 8 7 5.5349 -1.2313 2.6245 9 6 6.2079 -1.7964 3.6464 10 8 5.6033 -2.3920 4.5171 11 6 7.6793 -1.6921 3.7085 12 6 8.3739 -1.0107 2.7018 13 6 9.7320 -0.9076 2.7575 14 6 10.4377 -1.4975 3.8248 15 6 11.8441 -1.3987 3.8837 16 1 12.4151 -2.1377 4.4260 17 6 12.5003 -0.3408 3.2382 18 7 11.8320 0.7256 2.8876 19 14 14.3299 -0.4565 2.8797 20 1 14.5346 -1.0708 1.5433 21 1 14.9243 0.9042 2.8952 22 1 14.9853 -1.2948 3.9154 23 6 9.7349 -2.1868 4.8327 24 6 8.3762 -2.2796 4.7715 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.7209 -0.2701 -1.9979 29 1 1.7516 -1.7715 1.2055 30 1 1.6054 -0.2618 2.1369 31 1 3.8533 0.4369 1.3572 32 1 3.9994 -1.0729 0.4259 33 1 3.7866 -2.3854 2.5185 34 1 3.6404 -0.8759 3.4504 35 1 6.0176 -0.7590 1.9282 36 1 7.8323 -0.5623 1.8820 37 1 10.2665 -0.3786 1.9824 38 1 12.2860 1.4576 2.4413 39 1 10.2716 -2.6409 5.6525 40 1 7.8366 -2.8081 5.5434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279096455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:03 Heat of formation + Delta-G solvation = -97.768983 kcal Electronic energy + Delta-G solvation = -20260.553651 eV Core-core repulsion = 17038.695729 eV Total energy + Delta-G solvation = -3221.857923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.08880 -38.10606 -37.09712 -35.13595 -33.84931 -32.85662 -30.77391 -29.81405 -29.41043 -26.65460 -25.28340 -22.36759 -21.52168 -21.20293 -20.81392 -19.45122 -17.75868 -17.50898 -16.73587 -15.67506 -15.41452 -15.29300 -14.84746 -14.45805 -14.01817 -13.76808 -13.66120 -13.19925 -13.00299 -12.71596 -12.55969 -12.25171 -12.08277 -11.89943 -11.89141 -11.51474 -11.33550 -11.27463 -10.97760 -10.86708 -10.73536 -10.61576 -10.26128 -10.01952 -9.54096 -9.33967 -8.92351 -8.53017 -7.69942 -7.52077 -7.02076 -4.58565 2.25951 2.92910 2.96781 2.99064 3.05677 3.75113 3.82709 3.90604 3.99173 4.53573 4.59191 4.68423 4.83287 5.04652 5.15962 5.31870 5.41160 5.53355 5.59097 5.67001 5.73625 5.78023 5.87810 6.05558 6.08133 6.20795 6.31765 6.34414 6.78790 6.84500 6.98756 7.09987 7.15734 7.38902 7.45706 7.67974 7.81816 7.88036 8.09023 8.29655 8.41794 8.64898 8.77362 9.12833 9.90023 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026590 B = 0.002943 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.777903 B = 9511.644355 C =10382.824676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.100 3.900 3 H 0.055 0.945 4 O -0.565 6.565 5 C -0.110 4.110 6 C -0.129 4.129 7 C 0.123 3.877 8 N -0.742 5.742 9 C 0.570 3.430 10 O -0.577 6.577 11 C -0.284 4.284 12 C -0.063 4.063 13 C -0.179 4.179 14 C 0.128 3.872 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.772 5.772 19 Si 0.914 3.086 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.239 4.239 24 C -0.022 4.022 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.375 0.625 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.098 0.902 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 2.831 -8.013 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.041 3.959 3 H 0.073 0.927 4 O -0.371 6.371 5 C -0.148 4.148 6 C -0.166 4.166 7 C -0.001 4.001 8 N -0.395 5.395 9 C 0.365 3.635 10 O -0.460 6.460 11 C -0.288 4.288 12 C -0.082 4.082 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.396 5.396 19 Si 0.738 3.262 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.258 4.258 24 C -0.042 4.042 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.421 2.274 -7.038 15.323 hybrid contribution 0.666 0.807 -0.959 1.419 sum -12.754 3.081 -7.996 15.366 Atomic orbital electron populations 1.22525 0.96648 1.02871 1.02387 1.21831 0.92478 0.95380 0.86229 0.92676 1.86571 1.77040 1.57604 1.15870 1.21535 0.95618 1.01828 0.95799 1.21745 0.95462 1.01052 0.98386 1.21183 0.81259 1.00287 0.97345 1.45910 1.06627 1.59108 1.27900 1.18596 0.88132 0.76788 0.79987 1.90625 1.70786 1.44833 1.39732 1.18922 0.90167 1.16503 1.03225 1.20480 0.94910 0.96861 0.95932 1.20979 0.92672 1.05973 1.00158 1.17794 0.93229 0.87563 0.88938 1.19848 0.92100 1.08091 1.27048 0.89710 1.26101 1.01616 0.94095 0.92896 1.69748 1.39064 1.03755 1.26991 0.86204 0.81128 0.78718 0.80181 1.18940 1.20043 1.18290 1.20720 0.93247 1.10925 1.00955 1.20369 0.93862 0.94798 0.95145 0.91746 0.91519 0.92481 0.77828 0.90853 0.90364 0.91570 0.90551 0.92220 0.92298 0.76785 0.89317 0.86189 0.90264 0.88382 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 9.53 37.16 0.35 -0.85 16 2 C 0.10 0.81 3.58 -26.73 -0.10 0.71 16 3 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 4 O -0.57 -5.15 12.86 -35.23 -0.45 -5.60 16 5 C -0.11 -1.03 4.92 -26.73 -0.13 -1.16 16 6 C -0.13 -1.45 5.23 -26.73 -0.14 -1.59 16 7 C 0.12 1.80 5.67 -4.04 -0.02 1.78 16 8 N -0.74 -13.00 5.50 -61.31 -0.34 -13.34 16 9 C 0.57 12.61 7.76 -12.42 -0.10 12.51 16 10 O -0.58 -14.26 16.32 5.29 0.09 -14.18 16 11 C -0.28 -6.66 5.89 -104.73 -0.62 -7.28 16 12 C -0.06 -1.42 9.47 -39.61 -0.38 -1.79 16 13 C -0.18 -4.43 8.64 -39.27 -0.34 -4.77 16 14 C 0.13 3.30 5.58 -106.80 -0.60 2.71 16 15 C -0.44 -11.12 9.04 -37.75 -0.34 -11.46 16 16 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 17 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 18 N -0.77 -18.61 10.95 55.56 0.61 -18.00 16 19 Si 0.91 17.38 29.60 -169.99 -5.03 12.35 16 20 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 23 C -0.24 -5.88 9.73 -39.27 -0.38 -6.27 16 24 C -0.02 -0.54 9.52 -39.60 -0.38 -0.92 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.38 1.85 9.08 45.56 0.41 2.26 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.92 7.82 -51.93 -0.41 0.52 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 6.23 6.47 -40.82 -0.26 5.97 16 36 H 0.09 1.70 6.37 -52.49 -0.33 1.37 16 37 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 38 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 39 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 40 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -30.14 337.33 -8.38 -38.52 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.09 Total: 11.88 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -3.25 Total: -16.72 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.27 Total: -31.34 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.37 Total: -19.78 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.14 -8.38 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279096455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.245 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds