Wall clock time and date at job start Thu Apr 9 2020 13:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47287 * 2 1 4 4 C 1.34783 * 119.99666 * 90.00890 * 3 2 1 5 5 O 1.21286 * 120.00036 * 185.22279 * 4 3 2 6 6 C 1.50694 * 120.00069 * 5.21063 * 4 3 2 7 7 C 1.52996 * 109.47203 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47249 * 180.02562 * 7 6 4 9 9 H 1.08004 * 119.99650 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00308 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00354 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 119.99892 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47496 * 89.99778 * 12 10 8 14 14 H 1.48496 * 109.47424 * 209.99750 * 12 10 8 15 15 H 1.48501 * 109.47163 * 329.99644 * 12 10 8 16 16 C 1.39918 * 120.00510 * 270.00040 * 3 2 1 17 17 C 1.38940 * 120.03813 * 112.34381 * 16 3 2 18 18 C 1.38123 * 120.03451 * 179.72448 * 17 16 3 19 19 C 1.38213 * 120.12798 * 0.55169 * 18 17 16 20 20 C 1.38768 * 120.08228 * 359.72381 * 19 18 17 21 21 O 1.35899 * 120.01850 * 179.97438 * 20 19 18 22 22 C 1.42903 * 117.00125 * 0.02562 * 21 20 19 23 23 C 1.38626 * 119.96069 * 0.02562 * 20 19 18 24 24 H 1.09007 * 109.46677 * 299.99494 * 1 2 3 25 25 H 1.08998 * 109.47129 * 59.98898 * 1 2 3 26 26 H 1.08998 * 109.47467 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47129 * 120.01102 * 2 1 3 28 28 H 1.09007 * 109.46677 * 240.00506 * 2 1 3 29 29 H 1.09000 * 109.47352 * 300.00466 * 6 4 3 30 30 H 1.09000 * 109.47008 * 60.00258 * 6 4 3 31 31 H 1.08997 * 109.47602 * 300.00551 * 7 6 4 32 32 H 1.09001 * 109.46815 * 60.00529 * 7 6 4 33 33 H 0.96993 * 120.00392 * 179.97438 * 11 10 8 34 34 H 1.07995 * 119.97576 * 359.97438 * 17 16 3 35 35 H 1.08005 * 119.93308 * 180.25646 * 18 17 16 36 36 H 1.07992 * 119.95977 * 179.74479 * 19 18 17 37 37 H 1.09003 * 109.47081 * 300.00007 * 22 21 20 38 38 H 1.09000 * 109.47032 * 59.99934 * 22 21 20 39 39 H 1.08998 * 109.46697 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.06177 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2432 2.0164 1.1673 5 8 2.5561 3.1882 1.1696 6 6 2.1055 1.2708 2.4696 7 6 2.4122 2.2157 3.6332 8 6 2.2751 1.4699 4.9355 9 1 1.9974 0.4262 4.9334 10 6 2.5051 2.1196 6.1296 11 7 2.3850 1.4689 7.2662 12 14 2.9861 3.9246 6.1331 13 1 1.7621 4.7630 6.1985 14 1 3.8426 4.2064 7.3130 15 1 3.7360 4.2395 4.8907 16 6 2.2516 2.0408 -1.2117 17 6 1.4507 3.1129 -1.5853 18 6 1.6846 3.7677 -2.7788 19 6 2.7079 3.3515 -3.6094 20 6 3.5073 2.2777 -3.2440 21 8 4.5128 1.8693 -4.0619 22 6 4.6903 2.5914 -5.2822 23 6 3.2790 1.6213 -2.0445 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5140 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.0873 0.8940 2.5667 30 1 2.8052 0.4352 2.4856 31 1 3.4302 2.5929 3.5363 32 1 1.7121 3.0510 3.6170 33 1 2.5472 1.9259 8.1062 34 1 0.6475 3.4369 -0.9402 35 1 1.0637 4.6035 -3.0656 36 1 2.8858 3.8628 -4.5438 37 1 3.7811 2.5243 -5.8797 38 1 4.9015 3.6370 -5.0582 39 1 5.5234 2.1634 -5.8397 40 1 3.9005 0.7856 -1.7583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291137852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:32 Heat of formation + Delta-G solvation = -70.496830 kcal Electronic energy + Delta-G solvation = -21240.886749 eV Core-core repulsion = 18020.211435 eV Total energy + Delta-G solvation = -3220.675314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77677 -40.62921 -38.47392 -36.75200 -35.59629 -33.43409 -32.22928 -31.55738 -30.14886 -28.30129 -27.82616 -24.61443 -24.21231 -23.26917 -22.34727 -20.36751 -19.33261 -18.83128 -17.70408 -17.39777 -17.17271 -16.98663 -16.63292 -16.35857 -16.22328 -15.11980 -15.06746 -14.83010 -14.67419 -14.51475 -14.24499 -13.67166 -13.58013 -13.46937 -13.22933 -12.95118 -12.85675 -12.64501 -12.24737 -12.09205 -12.02026 -11.93605 -11.87798 -11.76382 -11.40666 -10.87153 -10.78557 -10.40580 -9.60582 -9.20178 -8.32007 -6.34710 0.16619 0.39407 1.32040 1.34275 1.49357 1.52775 1.78853 2.34332 2.43589 2.66691 3.03627 3.72307 3.82128 3.97624 4.07835 4.17801 4.22742 4.28573 4.32238 4.41079 4.41913 4.45574 4.50093 4.59830 4.65819 4.76565 4.85605 4.93831 5.01992 5.19265 5.28427 5.32071 5.34616 5.39594 5.41074 5.50740 5.59121 5.89824 6.19733 6.25277 6.40095 6.71182 7.12928 7.30645 8.83575 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.003924 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.527703 B = 7134.755632 C = 7584.795026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.573 5.573 4 C 0.517 3.483 5 O -0.571 6.571 6 C -0.110 4.110 7 C 0.006 3.994 8 C -0.527 4.527 9 H 0.053 0.947 10 C 0.016 3.984 11 N -0.942 5.942 12 Si 0.935 3.065 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.264 1.264 16 C 0.169 3.831 17 C -0.162 4.162 18 C -0.068 4.068 19 C -0.207 4.207 20 C 0.130 3.870 21 O -0.334 6.334 22 C 0.017 3.983 23 C -0.172 4.172 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.268 0.732 34 H 0.113 0.887 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.119 0.881 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 -0.579 -28.152 28.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.303 5.303 4 C 0.309 3.691 5 O -0.449 6.449 6 C -0.150 4.150 7 C -0.032 4.032 8 C -0.565 4.565 9 H 0.072 0.928 10 C -0.182 4.182 11 N -0.583 5.583 12 Si 0.760 3.240 13 H -0.193 1.193 14 H -0.202 1.202 15 H -0.189 1.189 16 C 0.078 3.922 17 C -0.182 4.182 18 C -0.086 4.086 19 C -0.225 4.225 20 C 0.084 3.916 21 O -0.248 6.248 22 C -0.077 4.077 23 C -0.193 4.193 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.721 -0.132 -27.912 27.921 hybrid contribution 0.116 0.871 0.592 1.060 sum -0.604 0.739 -27.319 27.336 Atomic orbital electron populations 1.22169 0.94548 1.03825 1.01932 1.22000 0.95598 0.79470 1.05216 1.45763 1.65802 1.15832 1.02932 1.21482 0.74698 0.86923 0.86042 1.90651 1.48201 1.18222 1.87778 1.21541 1.04828 0.99442 0.89174 1.19231 0.96216 0.95048 0.92723 1.21385 1.46490 0.98115 0.90496 0.92839 1.25754 0.94889 1.02267 0.95275 1.70010 1.51370 1.38632 0.98240 0.85876 0.79227 0.80944 0.77966 1.19293 1.20239 1.18881 1.17447 0.94212 0.94359 0.86140 1.21286 1.00822 0.97852 0.98211 1.21120 0.96675 0.98593 0.92249 1.21553 0.98568 0.99114 1.03274 1.18838 0.88726 0.93645 0.90399 1.86051 1.48690 1.57433 1.32648 1.23388 1.03944 0.97339 0.83010 1.20441 0.99674 1.04456 0.94685 0.93352 0.92572 0.88730 0.88435 0.88208 0.87625 0.87706 0.97370 0.97312 0.92336 0.86933 0.82725 0.82237 0.91045 0.91806 0.86320 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 10.24 71.98 0.74 -2.45 16 2 C 0.10 2.08 5.90 86.38 0.51 2.59 16 3 N -0.57 -17.10 2.52 -631.31 -1.59 -18.70 16 4 C 0.52 19.86 7.55 87.65 0.66 20.52 16 5 O -0.57 -26.72 15.55 -3.05 -0.05 -26.77 16 6 C -0.11 -4.31 4.09 29.84 0.12 -4.19 16 7 C 0.01 0.29 3.33 29.85 0.10 0.39 16 8 C -0.53 -30.53 9.66 25.60 0.25 -30.28 16 9 H 0.05 3.23 7.99 -2.91 -0.02 3.21 16 10 C 0.02 0.96 5.47 84.65 0.46 1.42 16 11 N -0.94 -59.10 13.96 21.45 0.30 -58.80 16 12 Si 0.94 47.26 27.47 68.60 1.88 49.15 16 13 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 14 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 15 H -0.26 -13.42 6.54 99.48 0.65 -12.77 16 16 C 0.17 4.93 4.84 38.14 0.18 5.12 16 17 C -0.16 -4.47 9.33 22.41 0.21 -4.26 16 18 C -0.07 -1.44 10.03 22.24 0.22 -1.22 16 19 C -0.21 -3.97 9.04 22.39 0.20 -3.77 16 20 C 0.13 3.01 6.68 22.49 0.15 3.16 16 21 O -0.33 -6.88 10.49 -92.41 -0.97 -7.85 16 22 C 0.02 0.18 9.81 113.37 1.11 1.30 16 23 C -0.17 -4.60 9.60 22.49 0.22 -4.38 16 24 H 0.05 1.09 7.57 -2.38 -0.02 1.07 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 27 H 0.10 1.97 6.45 -2.39 -0.02 1.96 16 28 H 0.10 1.71 7.84 -2.38 -0.02 1.69 16 29 H 0.11 3.73 7.47 -2.39 -0.02 3.71 16 30 H 0.10 3.73 7.59 -2.39 -0.02 3.71 16 31 H 0.01 0.43 7.16 -2.39 -0.02 0.41 16 32 H 0.01 0.45 7.53 -2.39 -0.02 0.43 16 33 H 0.27 15.70 8.31 -92.71 -0.77 14.92 16 34 H 0.11 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.16 1.94 6.29 -2.91 -0.02 1.93 16 37 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 38 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 39 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -76.32 334.44 5.68 -70.65 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.96 Total: 8.37 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 5.14 Total: -16.06 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -1.29 Total: -77.50 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.02 Total: -34.61 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.88 Total: 49.15 kcal Total: -76.32 5.68 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291137852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.149 kcal (2) G-P(sol) polarization free energy of solvation -76.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds