Wall clock time and date at job start Thu Apr 9 2020 13:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35904 * 116.99607 * 2 1 4 4 C 1.38753 * 120.05837 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94114 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05590 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.11435 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.97097 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46867 * 199.99872 * 8 7 6 10 10 C 1.53000 * 109.47254 * 80.00317 * 8 7 6 11 11 N 1.46496 * 109.47526 * 319.99979 * 8 7 6 12 12 C 1.34777 * 120.00258 * 205.00423 * 11 8 7 13 13 O 1.21279 * 120.00166 * 359.97438 * 12 11 8 14 14 C 1.50706 * 119.99762 * 179.97438 * 12 11 8 15 15 C 1.53002 * 109.46925 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47300 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00355 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99771 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47174 * 89.99890 * 20 18 16 22 22 H 1.48501 * 109.47062 * 209.99841 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99640 * 20 18 16 24 24 C 1.38167 * 120.05642 * 0.22834 * 7 6 5 25 25 H 1.09001 * 109.46880 * 299.99569 * 1 2 3 26 26 H 1.08997 * 109.47482 * 59.99843 * 1 2 3 27 27 H 1.09003 * 109.46730 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.02411 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.96907 * 179.97438 * 5 4 3 30 30 H 1.08005 * 119.94138 * 179.97438 * 6 5 4 31 31 H 1.09006 * 109.47229 * 180.02562 * 10 8 7 32 32 H 1.09002 * 109.46821 * 299.99584 * 10 8 7 33 33 H 1.08992 * 109.47302 * 59.99789 * 10 8 7 34 34 H 0.96999 * 119.99694 * 24.99813 * 11 8 7 35 35 H 1.09000 * 109.47318 * 299.99141 * 14 12 11 36 36 H 1.09000 * 109.47161 * 59.99772 * 14 12 11 37 37 H 1.09004 * 109.46930 * 299.99901 * 15 14 12 38 38 H 1.09004 * 109.47059 * 59.99503 * 15 14 12 39 39 H 0.96991 * 119.99891 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.02771 * 179.74067 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5171 -0.0032 8 6 5.5607 2.5983 -0.0055 9 1 5.9749 1.6536 -0.3580 10 6 6.0588 2.8752 1.4144 11 7 5.9901 3.6814 -0.8936 12 6 7.2148 3.6469 -1.4552 13 8 7.9616 2.7195 -1.2250 14 6 7.6562 4.7609 -2.3692 15 6 9.0754 4.4801 -2.8670 16 6 9.5171 5.5943 -3.7805 17 1 8.8522 6.4204 -3.9852 18 6 10.7704 5.5597 -4.3540 19 7 11.1556 6.5318 -5.1516 20 14 11.9207 4.1313 -3.9994 21 1 11.7036 3.0596 -5.0041 22 1 13.3282 4.5995 -4.0714 23 1 11.6450 3.5993 -2.6406 24 6 3.4311 1.2848 -0.0080 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2128 2.3203 0.0005 29 1 1.3339 4.5114 0.0000 30 1 3.7922 4.6381 -0.0024 31 1 7.1472 2.9344 1.4126 32 1 5.6446 3.8199 1.7668 33 1 5.7394 2.0694 2.0751 34 1 5.3929 4.4232 -1.0775 35 1 6.9780 4.8229 -3.2203 36 1 7.6427 5.7049 -1.8243 37 1 9.7534 4.4184 -2.0157 38 1 9.0893 3.5360 -3.4117 39 1 12.0375 6.5076 -5.5548 40 1 4.0206 0.3800 -0.0135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360006188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:37 Heat of formation + Delta-G solvation = -62.355957 kcal Electronic energy + Delta-G solvation = -20619.894834 eV Core-core repulsion = 17399.572536 eV Total energy + Delta-G solvation = -3220.322299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58787 -39.43432 -37.92764 -35.19797 -33.44861 -31.97035 -31.18501 -30.50636 -29.20229 -27.62245 -26.12647 -23.86075 -22.94915 -21.58562 -20.46378 -19.68509 -18.22588 -17.18267 -16.65294 -16.28465 -16.07753 -15.90311 -15.52281 -14.99810 -14.50406 -14.04023 -13.89955 -13.66037 -13.52081 -13.26019 -12.82447 -12.65347 -12.53854 -12.27740 -12.19380 -11.73180 -11.52490 -11.39303 -11.33887 -10.94596 -10.89421 -10.13747 -10.01838 -9.76041 -9.30494 -9.17109 -9.08562 -8.87143 -8.49390 -8.48513 -6.00952 -3.99535 0.99351 1.16250 2.89553 3.14773 3.37163 3.40029 3.46437 3.57595 3.60800 4.37462 4.47741 4.53098 4.72537 4.76173 4.76592 4.95318 5.04580 5.08944 5.19449 5.27644 5.34650 5.37943 5.46571 5.65337 5.70080 5.89173 5.98189 6.09349 6.11489 6.12807 6.17513 6.27480 6.44293 6.69142 6.72861 7.07286 7.39379 7.46417 7.77895 7.82780 8.52411 8.68173 9.02286 9.62237 11.11912 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033148 B = 0.003020 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.493694 B = 9268.756634 C = 9406.587540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.128 3.872 4 C -0.211 4.211 5 C -0.076 4.076 6 C -0.150 4.150 7 C -0.046 4.046 8 C 0.180 3.820 9 H 0.096 0.904 10 C -0.157 4.157 11 N -0.736 5.736 12 C 0.512 3.488 13 O -0.539 6.539 14 C -0.122 4.122 15 C 0.002 3.998 16 C -0.524 4.524 17 H 0.072 0.928 18 C 0.068 3.932 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.261 1.261 24 C -0.141 4.141 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.024 0.976 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.868 -8.889 13.585 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.230 4.230 5 C -0.094 4.094 6 C -0.169 4.169 7 C -0.047 4.047 8 C 0.075 3.925 9 H 0.114 0.886 10 C -0.215 4.215 11 N -0.391 5.391 12 C 0.301 3.699 13 O -0.415 6.415 14 C -0.162 4.162 15 C -0.036 4.036 16 C -0.562 4.562 17 H 0.090 0.910 18 C -0.133 4.133 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.185 1.185 24 C -0.160 4.160 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.069 -9.703 13.635 28.500 hybrid contribution -0.044 -0.134 -0.015 0.142 sum -23.113 -9.837 13.621 28.575 Atomic orbital electron populations 1.23058 0.78364 1.03973 1.01344 1.86084 1.21394 1.26927 1.88707 1.18964 0.92171 0.84203 0.96328 1.21236 0.99988 0.92436 1.09296 1.20915 0.94433 0.97052 0.96994 1.20880 0.93774 0.98088 1.04111 1.19777 0.95109 0.92626 0.97147 1.19717 0.88647 0.93012 0.91093 0.88576 1.22156 1.02444 1.01927 0.94986 1.46328 1.17688 1.25352 1.49707 1.21544 0.80214 0.88311 0.79861 1.90648 1.53033 1.36224 1.61607 1.21674 1.01477 0.95536 0.97528 1.19368 0.90250 0.97337 0.96679 1.21119 1.00941 1.06963 1.27196 0.90951 1.24976 0.97944 0.95890 0.94478 1.69911 1.20181 1.32587 1.31639 0.86791 0.79810 0.82923 0.80003 1.20252 1.21483 1.18497 1.20254 0.91389 0.98185 1.06176 0.92668 0.92596 0.88222 0.85529 0.85549 0.85654 0.91263 0.92283 0.91751 0.76681 0.89627 0.89588 0.95812 0.96265 0.92741 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.12 10.50 -19.44 -0.20 -3.33 16 3 C 0.13 1.33 6.69 -39.22 -0.26 1.07 16 4 C -0.21 -1.84 9.04 -39.43 -0.36 -2.19 16 5 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 6 C -0.15 -1.41 9.05 -39.56 -0.36 -1.77 16 7 C -0.05 -0.50 4.95 -104.65 -0.52 -1.02 16 8 C 0.18 2.24 2.78 -69.09 -0.19 2.05 16 9 H 0.10 1.36 7.43 -51.93 -0.39 0.98 16 10 C -0.16 -1.79 9.46 37.16 0.35 -1.44 16 11 N -0.74 -10.00 5.03 -54.93 -0.28 -10.27 16 12 C 0.51 9.33 7.79 -10.98 -0.09 9.25 16 13 O -0.54 -11.88 15.65 5.56 0.09 -11.80 16 14 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 15 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 16 C -0.52 -15.10 9.66 -34.44 -0.33 -15.44 16 17 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 20 Si 0.88 22.78 27.47 -169.99 -4.67 18.11 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 24 C -0.14 -1.56 9.61 -39.43 -0.38 -1.93 16 25 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 26 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 29 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.13 1.00 6.91 -52.48 -0.36 0.64 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 4.35 6.87 -40.82 -0.28 4.07 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 38 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.13 1.40 8.03 -52.49 -0.42 0.98 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -34.83 335.43 -7.00 -41.84 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.88 Total: -0.20 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.89 Total: -11.97 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.50 Total: -37.71 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.12 Total: -15.12 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.83 -7.00 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360006188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.516 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds