Wall clock time and date at job start Thu Apr 9 2020 13:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35904 * 116.99607 * 2 1 4 4 C 1.38753 * 120.05837 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94114 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05590 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.11435 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.97097 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46867 * 199.99872 * 8 7 6 10 10 C 1.53000 * 109.47254 * 80.00317 * 8 7 6 11 11 N 1.46496 * 109.47526 * 319.99979 * 8 7 6 12 12 C 1.34777 * 120.00258 * 205.00423 * 11 8 7 13 13 O 1.21279 * 120.00166 * 359.97438 * 12 11 8 14 14 C 1.50706 * 119.99762 * 179.97438 * 12 11 8 15 15 C 1.53002 * 109.46925 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47300 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00355 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99771 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47174 * 89.99890 * 20 18 16 22 22 H 1.48501 * 109.47062 * 209.99841 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99640 * 20 18 16 24 24 C 1.38167 * 120.05642 * 0.22834 * 7 6 5 25 25 H 1.09001 * 109.46880 * 299.99569 * 1 2 3 26 26 H 1.08997 * 109.47482 * 59.99843 * 1 2 3 27 27 H 1.09003 * 109.46730 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.02411 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.96907 * 179.97438 * 5 4 3 30 30 H 1.08005 * 119.94138 * 179.97438 * 6 5 4 31 31 H 1.09006 * 109.47229 * 180.02562 * 10 8 7 32 32 H 1.09002 * 109.46821 * 299.99584 * 10 8 7 33 33 H 1.08992 * 109.47302 * 59.99789 * 10 8 7 34 34 H 0.96999 * 119.99694 * 24.99813 * 11 8 7 35 35 H 1.09000 * 109.47318 * 299.99141 * 14 12 11 36 36 H 1.09000 * 109.47161 * 59.99772 * 14 12 11 37 37 H 1.09004 * 109.46930 * 299.99901 * 15 14 12 38 38 H 1.09004 * 109.47059 * 59.99503 * 15 14 12 39 39 H 0.96991 * 119.99891 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.02771 * 179.74067 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5171 -0.0032 8 6 5.5607 2.5983 -0.0055 9 1 5.9749 1.6536 -0.3580 10 6 6.0588 2.8752 1.4144 11 7 5.9901 3.6814 -0.8936 12 6 7.2148 3.6469 -1.4552 13 8 7.9616 2.7195 -1.2250 14 6 7.6562 4.7609 -2.3692 15 6 9.0754 4.4801 -2.8670 16 6 9.5171 5.5943 -3.7805 17 1 8.8522 6.4204 -3.9852 18 6 10.7704 5.5597 -4.3540 19 7 11.1556 6.5318 -5.1516 20 14 11.9207 4.1313 -3.9994 21 1 11.7036 3.0596 -5.0041 22 1 13.3282 4.5995 -4.0714 23 1 11.6450 3.5993 -2.6406 24 6 3.4311 1.2848 -0.0080 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2128 2.3203 0.0005 29 1 1.3339 4.5114 0.0000 30 1 3.7922 4.6381 -0.0024 31 1 7.1472 2.9344 1.4126 32 1 5.6446 3.8199 1.7668 33 1 5.7394 2.0694 2.0751 34 1 5.3929 4.4232 -1.0775 35 1 6.9780 4.8229 -3.2203 36 1 7.6427 5.7049 -1.8243 37 1 9.7534 4.4184 -2.0157 38 1 9.0893 3.5360 -3.4117 39 1 12.0375 6.5076 -5.5548 40 1 4.0206 0.3800 -0.0135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360006188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:35 Heat of formation + Delta-G solvation = -85.576659 kcal Electronic energy + Delta-G solvation = -20620.901760 eV Core-core repulsion = 17399.572536 eV Total energy + Delta-G solvation = -3221.329224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.40327 -40.63498 -38.79402 -36.29406 -35.49869 -33.50353 -32.57521 -31.39778 -30.06236 -28.13569 -27.97491 -24.91599 -23.68640 -23.15604 -21.54009 -21.11722 -19.33017 -18.85011 -17.71049 -17.32534 -16.92645 -16.66092 -16.54427 -16.45747 -16.18012 -15.31523 -15.05255 -14.74846 -14.59774 -14.44422 -14.30868 -13.99771 -13.41322 -13.36795 -13.29488 -12.96746 -12.87954 -12.52295 -12.30704 -12.08398 -11.95734 -11.95482 -11.75887 -11.66318 -11.38780 -10.77925 -10.77278 -10.18755 -9.83729 -9.19458 -8.30797 -6.33411 0.25794 0.45205 1.33829 1.35637 1.50924 1.70146 2.15282 2.35721 2.42574 2.77350 3.04982 3.54319 3.85351 3.99210 4.11570 4.15901 4.22943 4.33450 4.35121 4.40029 4.42460 4.51741 4.54056 4.61505 4.73479 4.75921 4.89675 4.99421 5.04485 5.20457 5.29706 5.33608 5.41981 5.45798 5.46337 5.61934 5.63893 5.77505 6.24511 6.43881 6.58436 6.73061 7.31322 7.32071 8.84861 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033148 B = 0.003020 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.493694 B = 9268.756634 C = 9406.587540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.117 3.883 4 C -0.208 4.208 5 C -0.073 4.073 6 C -0.155 4.155 7 C -0.054 4.054 8 C 0.182 3.818 9 H 0.073 0.927 10 C -0.151 4.151 11 N -0.714 5.714 12 C 0.517 3.483 13 O -0.583 6.583 14 C -0.117 4.117 15 C 0.005 3.995 16 C -0.528 4.528 17 H 0.051 0.949 18 C 0.013 3.987 19 N -0.944 5.944 20 Si 0.938 3.062 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.261 1.261 24 C -0.162 4.162 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.142 0.858 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.414 0.586 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.011 0.989 38 H 0.007 0.993 39 H 0.267 0.733 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.102 -8.881 14.597 31.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.071 3.929 4 C -0.227 4.227 5 C -0.091 4.091 6 C -0.173 4.173 7 C -0.054 4.054 8 C 0.077 3.923 9 H 0.091 0.909 10 C -0.209 4.209 11 N -0.368 5.368 12 C 0.305 3.695 13 O -0.463 6.463 14 C -0.156 4.156 15 C -0.033 4.033 16 C -0.566 4.566 17 H 0.069 0.931 18 C -0.185 4.185 19 N -0.584 5.584 20 Si 0.763 3.237 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.185 1.185 24 C -0.181 4.181 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.159 0.841 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.252 0.748 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.029 0.971 38 H 0.026 0.974 39 H 0.076 0.924 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -25.364 -9.677 14.660 30.853 hybrid contribution 0.490 -0.116 -0.322 0.598 sum -24.874 -9.794 14.338 30.335 Atomic orbital electron populations 1.23347 0.76308 1.05518 1.02393 1.86056 1.23613 1.27031 1.88704 1.19108 0.92083 0.85096 0.96574 1.21566 1.01268 0.91901 1.07947 1.21277 0.94200 0.98071 0.95572 1.21102 0.94447 0.98029 1.03722 1.19568 0.93772 0.93324 0.98778 1.19715 0.90072 0.91388 0.91115 0.90850 1.22095 1.00848 1.03379 0.94585 1.46069 1.16228 1.25957 1.48514 1.21203 0.81200 0.87280 0.79796 1.90637 1.54661 1.37694 1.63300 1.21505 0.98472 0.96906 0.98744 1.19225 0.93511 0.95304 0.95285 1.21435 1.00603 1.07224 1.27320 0.93068 1.25801 0.99796 0.98356 0.94506 1.70019 1.20986 1.34471 1.32960 0.85835 0.78212 0.79930 0.79769 1.19478 1.20350 1.18548 1.20319 0.92228 0.98131 1.07426 0.91360 0.91664 0.86638 0.83088 0.82657 0.84078 0.93606 0.90629 0.90399 0.74775 0.88019 0.87700 0.97107 0.97424 0.92393 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.32 10.50 -92.47 -0.97 -7.29 16 3 C 0.12 2.26 6.69 22.51 0.15 2.41 16 4 C -0.21 -3.03 9.04 22.36 0.20 -2.83 16 5 C -0.07 -0.98 10.04 22.25 0.22 -0.76 16 6 C -0.15 -2.49 9.05 22.28 0.20 -2.29 16 7 C -0.05 -1.10 4.95 -19.88 -0.10 -1.20 16 8 C 0.18 4.41 2.78 44.25 0.12 4.54 16 9 H 0.07 2.14 7.43 -2.39 -0.02 2.12 16 10 C -0.15 -3.32 9.46 71.98 0.68 -2.64 16 11 N -0.71 -18.39 5.03 -446.10 -2.24 -20.64 16 12 C 0.52 18.48 7.79 87.66 0.68 19.17 16 13 O -0.58 -25.93 15.65 -3.03 -0.05 -25.98 16 14 C -0.12 -4.41 5.64 29.85 0.17 -4.25 16 15 C 0.00 0.24 3.33 29.85 0.10 0.34 16 16 C -0.53 -30.64 9.66 25.60 0.25 -30.39 16 17 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 18 C 0.01 0.78 5.47 84.65 0.46 1.24 16 19 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 20 Si 0.94 47.26 27.47 68.60 1.88 49.15 16 21 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.26 -13.09 6.54 99.48 0.65 -12.44 16 24 C -0.16 -3.51 9.61 22.37 0.21 -3.30 16 25 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 26 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 27 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.15 1.37 6.30 -2.91 -0.02 1.36 16 29 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 30 H 0.14 1.75 6.91 -2.91 -0.02 1.73 16 31 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.41 8.01 6.87 -92.71 -0.64 7.37 16 35 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.01 0.56 7.16 -2.38 -0.02 0.54 16 38 H 0.01 0.39 7.53 -2.39 -0.02 0.37 16 39 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 40 H 0.12 2.75 8.03 -2.91 -0.02 2.73 16 Total: -1.00 -75.95 335.43 3.74 -72.22 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.34 Total: 10.36 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 4.47 Total: -18.67 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -1.94 Total: -79.78 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.02 Total: -33.27 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.88 Total: 49.15 kcal Total: -75.95 3.74 -72.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360006188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.362 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds