Wall clock time and date at job start Thu Apr 9 2020 13:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47238 * 240.00157 * 2 1 3 5 5 C 1.50696 * 109.47116 * 175.00181 * 4 2 1 6 6 C 1.38285 * 119.97323 * 89.99837 * 5 4 2 7 7 C 1.38247 * 120.11130 * 179.69858 * 6 5 4 8 8 C 1.38161 * 120.05787 * 0.25492 * 7 6 5 9 9 C 1.38715 * 119.94093 * 0.02562 * 8 7 6 10 10 O 1.35904 * 120.05297 * 180.02562 * 9 8 7 11 11 C 1.38123 * 119.97081 * 270.24705 * 5 4 2 12 12 N 1.46502 * 109.47090 * 119.99818 * 2 1 3 13 13 C 1.34774 * 120.00214 * 275.00013 * 12 2 1 14 14 O 1.21287 * 119.99950 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00247 * 179.97438 * 13 12 2 16 16 C 1.52995 * 109.47119 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47119 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99982 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00129 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99694 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00110 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47261 * 89.99830 * 21 19 17 23 23 H 1.48501 * 109.47115 * 210.00080 * 21 19 17 24 24 H 1.48504 * 109.47104 * 329.99951 * 21 19 17 25 25 H 1.09002 * 109.47059 * 300.00131 * 1 2 3 26 26 H 1.08999 * 109.47011 * 59.99784 * 1 2 3 27 27 H 1.08995 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47175 * 54.99576 * 4 2 1 29 29 H 1.09005 * 109.46959 * 294.99973 * 4 2 1 30 30 H 1.08002 * 119.94679 * 359.97438 * 6 5 4 31 31 H 1.07998 * 119.97068 * 180.27347 * 7 6 5 32 32 H 1.07999 * 120.03538 * 179.97438 * 8 7 6 33 33 H 0.96704 * 113.99603 * 90.00753 * 10 9 8 34 34 H 1.08005 * 120.03130 * 0.02562 * 11 5 4 35 35 H 0.96992 * 119.99905 * 95.00231 * 12 2 1 36 36 H 1.09001 * 109.46812 * 300.00218 * 15 13 12 37 37 H 1.09004 * 109.46949 * 59.99835 * 15 13 12 38 38 H 1.09001 * 109.47485 * 299.99841 * 16 15 13 39 39 H 1.09004 * 109.47316 * 60.00094 * 16 15 13 40 40 H 0.96998 * 119.99529 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 6 4.3288 -1.5822 -0.7149 7 6 5.7069 -1.4908 -0.7767 8 6 6.3013 -0.4294 -1.4316 9 6 5.5142 0.5453 -2.0270 10 8 6.0965 1.5900 -2.6723 11 6 4.1313 0.4514 -1.9633 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6488 -0.7287 3.5878 16 6 2.7010 0.2546 4.7587 17 6 3.2022 -0.4561 5.9895 18 1 3.4583 -1.5042 5.9412 19 6 3.3338 0.2317 7.1772 20 7 3.7707 -0.3887 8.2514 21 14 2.8901 2.0443 7.2610 22 1 1.4574 2.1870 7.6243 23 1 3.7301 2.7126 8.2872 24 1 3.1303 2.6743 5.9378 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -0.2617 -2.1370 29 1 1.7517 -1.7715 -1.2056 30 1 3.8661 -2.4129 -0.2028 31 1 6.3193 -2.2499 -0.3129 32 1 7.3779 -0.3582 -1.4793 33 1 6.2612 1.4297 -3.6116 34 1 3.5163 1.2091 -2.4262 35 1 2.2490 -1.6317 1.1527 36 1 1.9759 -1.5505 3.8326 37 1 3.6480 -1.1213 3.3986 38 1 3.3742 1.0761 4.5137 39 1 1.7021 0.6476 4.9480 40 1 3.8636 0.0953 9.0869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360365696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:39 Heat of formation + Delta-G solvation = -77.241457 kcal Electronic energy + Delta-G solvation = -21035.489841 eV Core-core repulsion = 17814.522059 eV Total energy + Delta-G solvation = -3220.967783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16574 -39.25412 -37.29761 -35.70257 -33.43146 -32.41930 -31.33859 -30.30817 -29.96148 -26.73427 -26.04634 -22.81961 -22.51220 -21.49821 -20.55349 -19.67038 -18.26856 -17.17538 -16.59476 -16.31605 -15.90778 -15.62891 -15.31243 -14.91831 -14.25190 -14.09726 -13.82722 -13.52390 -13.39106 -12.78217 -12.65133 -12.52391 -12.46482 -12.17133 -11.96377 -11.71120 -11.63224 -11.36747 -11.07187 -10.91473 -10.61995 -10.11870 -10.00288 -9.74933 -9.18882 -9.12821 -9.04958 -8.79768 -8.73818 -8.47660 -6.00424 -3.98754 1.06306 1.14587 3.20289 3.40357 3.41831 3.46689 3.51314 3.58807 3.95853 4.48465 4.53928 4.66306 4.77613 4.92183 5.03546 5.09830 5.24423 5.33487 5.35380 5.39474 5.46663 5.57791 5.64155 5.71004 5.80239 6.01176 6.13403 6.13775 6.17754 6.22327 6.23430 6.36611 6.62826 6.72573 6.76244 7.40680 7.43492 7.48148 7.80654 7.86363 8.53541 8.73724 9.02867 9.63056 11.12478 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.004140 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.354846 B = 6762.086535 C = 7399.225240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.087 0.913 4 C -0.088 4.088 5 C -0.063 4.063 6 C -0.120 4.120 7 C -0.098 4.098 8 C -0.150 4.150 9 C 0.105 3.895 10 O -0.499 6.499 11 C -0.142 4.142 12 N -0.735 5.735 13 C 0.512 3.488 14 O -0.541 6.541 15 C -0.122 4.122 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.387 0.613 34 H 0.126 0.874 35 H 0.395 0.605 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 -3.939 -25.980 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.126 4.126 5 C -0.063 4.063 6 C -0.138 4.138 7 C -0.117 4.117 8 C -0.168 4.168 9 C 0.060 3.940 10 O -0.309 6.309 11 C -0.161 4.161 12 N -0.388 5.388 13 C 0.300 3.700 14 O -0.417 6.417 15 C -0.162 4.162 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.243 0.757 34 H 0.144 0.856 35 H 0.229 0.771 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.593 -2.764 -25.191 25.349 hybrid contribution 0.026 0.269 -0.282 0.390 sum -0.567 -2.496 -25.473 25.601 Atomic orbital electron populations 1.22185 0.95255 1.02060 1.02613 1.20835 0.93695 0.97702 0.83735 0.89521 1.20963 0.91100 1.02073 0.98474 1.19680 0.95524 0.94287 0.96777 1.21056 0.93674 0.99331 0.99740 1.21053 0.94894 0.97723 0.97980 1.21425 1.00349 0.94297 1.00765 1.18462 0.90548 0.87743 0.97210 1.84864 1.81776 1.37626 1.26632 1.21282 0.94085 0.98465 1.02261 1.46215 1.69155 1.13768 1.09712 1.21485 0.76293 0.87536 0.84666 1.90646 1.49480 1.16495 1.85050 1.21656 1.01574 1.00555 0.92427 1.19357 0.97471 0.94606 0.92167 1.21123 1.44123 0.98226 0.92702 0.90972 1.24965 0.94456 0.98248 0.95537 1.69916 1.47001 1.36697 1.00728 0.86803 0.78600 0.85852 0.78363 1.20248 1.21451 1.18527 0.91660 0.91991 0.92475 0.89511 0.90145 0.85824 0.85410 0.85568 0.75724 0.85564 0.77079 0.89752 0.89755 0.95884 0.96329 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.15 1.68 2.56 -67.93 -0.17 1.51 16 3 H 0.09 1.25 7.58 -51.92 -0.39 0.85 16 4 C -0.09 -0.73 4.89 -27.89 -0.14 -0.87 16 5 C -0.06 -0.63 4.95 -104.65 -0.52 -1.14 16 6 C -0.12 -1.17 9.09 -39.56 -0.36 -1.53 16 7 C -0.10 -0.98 10.04 -39.61 -0.40 -1.38 16 8 C -0.15 -1.58 9.99 -39.43 -0.39 -1.97 16 9 C 0.10 1.16 6.71 -39.21 -0.26 0.89 16 10 O -0.50 -5.01 13.50 -19.44 -0.26 -5.27 16 11 C -0.14 -1.52 9.64 -39.43 -0.38 -1.90 16 12 N -0.73 -9.70 4.53 -53.80 -0.24 -9.94 16 13 C 0.51 9.46 7.79 -10.99 -0.09 9.37 16 14 O -0.54 -12.23 15.65 5.55 0.09 -12.15 16 15 C -0.12 -2.42 5.64 -27.89 -0.16 -2.57 16 16 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 17 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 18 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 21 Si 0.88 23.04 27.47 -169.99 -4.67 18.37 16 22 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.26 -6.88 6.54 56.52 0.37 -6.51 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.12 0.97 7.57 -52.49 -0.40 0.57 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.39 1.78 9.06 45.56 0.41 2.19 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.40 4.09 7.82 -40.82 -0.32 3.77 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 38 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 39 H 0.02 0.49 7.52 -51.93 -0.39 0.10 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -36.63 339.17 -7.51 -44.14 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.27 Total: 1.93 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -3.04 Total: -14.60 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.53 Total: -37.53 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.18 Total: -17.41 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.67 Total: 18.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.63 -7.51 -44.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360365696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.102 kcal (2) G-P(sol) polarization free energy of solvation -36.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds