Wall clock time and date at job start Thu Apr 9 2020 13:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34225 * 117.00388 * 2 1 4 4 O 1.20823 * 119.99897 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99909 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.46803 * 59.99881 * 5 3 2 7 7 C 1.52998 * 109.47443 * 300.00086 * 5 3 2 8 8 N 1.46895 * 109.47151 * 179.97438 * 5 3 2 9 9 C 1.46909 * 110.99736 * 66.04842 * 8 5 3 10 10 C 1.46900 * 111.00379 * 189.99822 * 8 5 3 11 11 C 1.50700 * 109.47178 * 170.00283 * 10 8 5 12 12 C 1.38636 * 119.74858 * 90.00558 * 11 10 8 13 13 C 1.37616 * 120.24699 * 179.70329 * 12 11 10 14 14 C 1.40721 * 119.74615 * 0.27327 * 13 12 11 15 15 C 1.41398 * 120.24475 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99940 * 204.38459 * 15 14 13 17 17 C 1.39950 * 119.99737 * 24.38136 * 15 14 13 18 18 N 1.30819 * 120.00082 * 17.86893 * 17 15 14 19 19 Si 1.86800 * 119.99528 * 197.87014 * 17 15 14 20 20 H 1.48505 * 109.47342 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47335 * 120.00156 * 19 17 15 22 22 H 1.48508 * 109.46733 * 239.99831 * 19 17 15 23 23 C 1.40714 * 119.51046 * 359.97438 * 14 13 12 24 24 C 1.37620 * 119.74777 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.46769 * 300.00707 * 1 2 3 26 26 H 1.08997 * 109.46957 * 59.99732 * 1 2 3 27 27 H 1.08999 * 109.48038 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46736 * 300.00098 * 7 5 3 29 29 H 1.09000 * 109.47136 * 59.99547 * 7 5 3 30 30 H 1.08998 * 109.47452 * 179.97438 * 7 5 3 31 31 H 1.08996 * 109.47143 * 183.95278 * 9 8 5 32 32 H 1.08997 * 109.47040 * 303.95325 * 9 8 5 33 33 H 1.08996 * 109.46828 * 63.95618 * 9 8 5 34 34 H 1.09006 * 109.46253 * 50.00538 * 10 8 5 35 35 H 1.08995 * 109.47131 * 290.00566 * 10 8 5 36 36 H 1.07993 * 119.87364 * 359.97245 * 12 11 10 37 37 H 1.08000 * 120.12884 * 180.29688 * 13 12 11 38 38 H 0.97001 * 119.99459 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.12730 * 180.02562 * 23 14 13 40 40 H 1.07994 * 119.87695 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9564 0.7803 -0.8891 7 6 4.1129 0.5813 1.2501 8 7 3.9830 2.6833 -0.0002 9 6 3.5978 3.3468 1.2527 10 6 5.4275 2.8050 -0.2377 11 6 5.7774 4.2514 -0.4758 12 6 6.1186 5.0620 0.5959 13 6 6.4458 6.3826 0.3896 14 6 6.4274 6.9110 -0.9146 15 6 6.7623 8.2663 -1.1387 16 1 6.3892 8.7770 -2.0140 17 6 7.5771 8.9459 -0.2261 18 7 8.3073 8.2734 0.6259 19 14 7.6218 10.8134 -0.2246 20 1 6.7123 11.3312 -1.2781 21 1 7.1825 11.3180 1.1011 22 1 9.0068 11.2755 -0.4960 23 6 6.0745 6.0802 -1.9940 24 6 5.7509 4.7625 -1.7643 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 3.7229 1.0757 2.1399 29 1 3.8038 -0.4639 1.2503 30 1 5.2015 0.6379 1.2503 31 1 3.8551 4.4046 1.1976 32 1 2.5236 3.2416 1.4042 33 1 4.1291 2.8866 2.0857 34 1 5.7027 2.2159 -1.1126 35 1 5.9711 2.4382 0.6329 36 1 6.1320 4.6543 1.5959 37 1 6.7160 7.0111 1.2253 38 1 8.8717 8.7445 1.2586 39 1 6.0575 6.4752 -2.9991 40 1 5.4801 4.1229 -2.5913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361633858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:48 Heat of formation + Delta-G solvation = -58.023352 kcal Electronic energy + Delta-G solvation = -21297.354099 eV Core-core repulsion = 18077.219676 eV Total energy + Delta-G solvation = -3220.134423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63470 -38.33739 -37.02881 -36.05569 -33.76068 -31.53433 -29.64139 -29.28548 -27.78886 -27.20185 -25.77339 -24.28279 -22.24417 -20.88575 -20.21590 -19.52494 -17.52051 -17.26696 -16.71938 -16.41100 -15.43583 -15.29471 -14.57422 -14.50895 -13.98474 -13.69910 -13.46364 -13.40854 -13.15339 -12.55544 -12.49197 -12.13375 -11.99297 -11.92719 -11.61541 -11.47239 -11.29792 -11.26100 -10.96927 -10.87707 -10.76894 -10.51757 -10.38524 -10.08221 -9.54494 -9.35424 -9.10397 -8.01078 -7.39376 -7.26382 -6.74712 -4.32251 2.26192 2.52046 2.79693 3.08354 3.12424 3.14350 3.20530 3.94854 4.24318 4.65514 4.76326 4.90380 4.96687 5.00287 5.04802 5.34271 5.48071 5.54165 5.62726 5.76310 5.78625 5.82535 6.03135 6.10055 6.24628 6.31394 6.39349 6.44051 6.56678 6.97419 7.09795 7.22409 7.32066 7.38342 7.42067 7.65289 7.84163 7.91698 8.09025 8.16730 8.33614 8.67163 8.92666 9.01041 10.19777 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037280 B = 0.003435 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.884128 B = 8150.538408 C = 8279.873305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.483 6.483 5 C 0.090 3.910 6 H 0.116 0.884 7 C -0.183 4.183 8 N -0.516 5.516 9 C 0.017 3.983 10 C 0.122 3.878 11 C -0.209 4.209 12 C -0.091 4.091 13 C -0.167 4.167 14 C 0.113 3.887 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.906 3.094 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.228 4.228 24 C -0.067 4.067 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.090 0.910 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 -13.901 2.162 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.368 6.368 5 C -0.020 4.020 6 H 0.134 0.866 7 C -0.242 4.242 8 N -0.241 5.241 9 C -0.130 4.130 10 C -0.003 4.003 11 C -0.211 4.211 12 C -0.110 4.110 13 C -0.186 4.186 14 C 0.111 3.889 15 C -0.491 4.491 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.419 5.419 19 Si 0.731 3.269 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.248 4.248 24 C -0.086 4.086 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.369 -13.325 1.955 15.856 hybrid contribution 0.296 0.521 0.702 0.923 sum -8.074 -12.804 2.657 15.368 Atomic orbital electron populations 1.23208 0.76721 1.03325 1.02521 1.86491 1.23109 1.33929 1.84619 1.23788 0.91935 0.81206 0.72669 1.90658 1.66691 1.36051 1.43396 1.21304 0.87303 0.92594 1.00849 0.86622 1.22402 1.02537 1.01381 0.97862 1.62089 1.17180 1.08732 1.36061 1.22576 1.00845 1.01061 0.88558 1.20798 0.84389 0.96088 0.99044 1.18763 1.14549 0.93837 0.93942 1.20502 1.00184 0.94618 0.95739 1.21273 1.05403 0.94392 0.97523 1.17629 0.87783 0.92573 0.90960 1.19637 1.26515 0.95800 1.07194 0.90456 1.25909 0.93385 1.00842 0.94017 1.69838 1.18216 1.37867 1.15953 0.86299 0.78804 0.82569 0.79271 1.18390 1.19732 1.20043 1.20963 1.12683 0.93806 0.97361 1.20318 0.98510 0.94972 0.94797 0.92110 0.91937 0.88343 0.91667 0.91029 0.90732 0.89735 0.91117 0.96107 0.91545 0.95154 0.89900 0.86573 0.91003 0.89131 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.26 10.47 -39.25 -0.41 -4.67 16 3 C 0.46 6.52 6.95 36.01 0.25 6.77 16 4 O -0.48 -8.36 14.08 -18.75 -0.26 -8.63 16 5 C 0.09 1.18 2.83 -68.87 -0.19 0.98 16 6 H 0.12 1.33 7.93 -51.93 -0.41 0.92 16 7 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 8 N -0.52 -8.56 4.44 -237.73 -1.06 -9.62 16 9 C 0.02 0.29 8.08 60.07 0.49 0.77 16 10 C 0.12 2.09 4.68 -4.98 -0.02 2.07 16 11 C -0.21 -4.49 4.91 -104.33 -0.51 -5.01 16 12 C -0.09 -2.10 7.92 -39.66 -0.31 -2.41 16 13 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 14 C 0.11 3.04 5.58 -106.82 -0.60 2.45 16 15 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 16 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 17 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 18 N -0.79 -20.56 10.95 55.55 0.61 -19.95 16 19 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 20 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 24 C -0.07 -1.52 9.67 -39.66 -0.38 -1.91 16 25 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.73 6.42 -51.93 -0.33 0.40 16 29 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 30 H 0.07 0.78 6.91 -51.93 -0.36 0.42 16 31 H 0.08 1.62 6.16 -51.93 -0.32 1.30 16 32 H 0.07 1.20 5.83 -51.93 -0.30 0.89 16 33 H 0.02 0.31 6.46 -51.93 -0.34 -0.03 16 34 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 35 H 0.03 0.49 7.00 -51.93 -0.36 0.12 16 36 H 0.08 1.73 8.02 -52.49 -0.42 1.31 16 37 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 38 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 39 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -29.47 326.69 -7.95 -37.42 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.66 Total: 4.94 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -1.06 Total: -18.20 kcal Atomic # 7 Polarization: -29.12 SS G_CDS: -0.45 Total: -29.57 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.67 Total: -13.30 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.47 -7.95 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361633858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.605 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds