Wall clock time and date at job start Thu Apr 9 2020 13:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47614 * 2 1 4 4 C 1.50698 * 109.47146 * 240.00108 * 2 1 3 5 5 C 1.34517 * 125.79108 * 100.00122 * 4 2 1 6 6 C 1.41381 * 106.84307 * 180.02562 * 5 4 2 7 7 C 1.34521 * 106.84128 * 359.97438 * 6 5 4 8 8 O 1.34303 * 108.41682 * 0.26924 * 7 6 5 9 9 N 1.46501 * 109.47318 * 120.00462 * 2 1 3 10 10 C 1.34783 * 120.00072 * 240.00177 * 9 2 1 11 11 O 1.21280 * 120.00181 * 176.28313 * 10 9 2 12 12 C 1.50701 * 119.99512 * 356.28392 * 10 9 2 13 13 C 1.53008 * 109.46495 * 185.01956 * 12 10 9 14 14 C 1.50701 * 109.46495 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00487 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99628 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00136 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00004 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47059 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47027 * 119.99687 * 18 16 14 21 21 H 1.48497 * 109.47146 * 239.99638 * 18 16 14 22 22 C 1.46501 * 120.00004 * 59.99363 * 9 2 1 23 23 C 1.53007 * 117.49734 * 197.11872 * 22 9 2 24 24 C 1.53004 * 117.49614 * 128.46362 * 22 9 2 25 25 H 1.08997 * 109.46797 * 299.99640 * 1 2 3 26 26 H 1.08998 * 109.47093 * 59.99668 * 1 2 3 27 27 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 28 28 H 1.08001 * 126.57772 * 0.02562 * 5 4 2 29 29 H 1.07997 * 126.58184 * 180.02562 * 6 5 4 30 30 H 1.07997 * 125.78867 * 179.97438 * 7 6 5 31 31 H 1.08992 * 109.47295 * 305.01456 * 12 10 9 32 32 H 1.08998 * 109.47210 * 65.02397 * 12 10 9 33 33 H 1.08992 * 109.46941 * 299.99717 * 13 12 10 34 34 H 1.08998 * 109.47031 * 60.00332 * 13 12 10 35 35 H 0.96993 * 120.00113 * 180.02562 * 17 16 14 36 36 H 1.08996 * 115.55148 * 342.79631 * 22 9 2 37 37 H 1.08998 * 117.49948 * 0.02562 * 23 22 9 38 38 H 1.09003 * 117.49241 * 145.02571 * 23 22 9 39 39 H 1.09000 * 117.49884 * 214.98170 * 24 22 9 40 40 H 1.08998 * 117.49635 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4732 -0.1190 -2.3554 6 6 2.8432 -1.1542 -3.2444 7 6 2.6069 -2.3163 -2.6094 8 8 2.1105 -2.0414 -1.3921 9 7 2.0184 -0.6907 1.1961 10 6 2.7932 -0.0357 2.0834 11 8 3.1419 -0.5860 3.1064 12 6 3.2264 1.3804 1.8042 13 6 4.1918 1.8432 2.8973 14 6 4.6244 3.2596 2.6185 15 1 4.2489 3.7777 1.7485 16 6 5.5007 3.8938 3.4736 17 7 5.9584 3.2628 4.5328 18 14 6.0365 5.6497 3.1284 19 1 5.3834 6.1310 1.8846 20 1 5.6410 6.5203 4.2646 21 1 7.5114 5.6933 2.9614 22 6 1.6644 -2.0933 1.4279 23 6 1.8478 -2.6434 2.8438 24 6 2.8040 -3.0693 1.7270 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.5331 0.9428 -2.5433 29 1 3.2403 -1.0349 -4.2416 30 1 2.7817 -3.3030 -3.0122 31 1 3.7259 1.4235 0.8364 32 1 2.3526 2.0318 1.7915 33 1 3.6923 1.8002 3.8651 34 1 5.0656 1.1918 2.9100 35 1 6.5745 3.7090 5.1346 36 1 0.8207 -2.4672 0.8480 37 1 2.2314 -1.9617 3.6029 38 1 1.1248 -3.3797 3.1952 39 1 2.7099 -4.0855 1.3441 40 1 3.8172 -2.6680 1.7509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361678003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:51 Heat of formation + Delta-G solvation = 15.675168 kcal Electronic energy + Delta-G solvation = -21949.580804 eV Core-core repulsion = 18732.642189 eV Total energy + Delta-G solvation = -3216.938615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.61146 -40.03860 -36.38697 -35.41068 -33.38459 -32.97705 -31.17127 -30.43340 -28.55023 -25.92844 -23.72784 -23.08396 -22.08126 -21.66186 -20.84149 -20.56123 -18.56081 -17.55153 -16.78194 -16.19987 -16.00332 -15.61053 -15.13693 -14.49678 -14.42392 -14.00888 -13.60271 -13.31320 -13.17114 -12.94140 -12.81078 -12.59312 -12.25234 -12.18800 -11.86482 -11.63494 -11.20630 -11.00617 -10.96570 -10.81489 -10.57509 -10.11461 -9.98953 -9.93810 -9.58533 -9.11155 -8.72966 -8.49848 -8.34360 -8.23652 -5.96968 -4.01337 1.67557 2.55145 2.86443 3.08309 3.20180 3.32160 3.39503 3.42463 4.20685 4.43372 4.46145 4.84259 4.91465 4.96905 5.05644 5.08803 5.14822 5.33965 5.37706 5.38318 5.57414 5.61066 5.73120 5.81240 5.87332 5.93476 5.98923 6.06745 6.11113 6.15739 6.31102 6.43569 6.61049 6.84178 7.02640 7.10572 7.68075 7.73325 7.84196 8.05473 8.37284 8.71302 9.06866 9.62362 11.14017 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.004925 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.062661 B = 5683.575158 C = 6570.468138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.219 3.781 3 H 0.128 0.872 4 C -0.015 4.015 5 C -0.205 4.205 6 C -0.213 4.213 7 C -0.046 4.046 8 O -0.162 6.162 9 N -0.592 5.592 10 C 0.515 3.485 11 O -0.518 6.518 12 C -0.133 4.133 13 C 0.038 3.962 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.078 3.922 23 C -0.199 4.199 24 C -0.185 4.185 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.199 0.801 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.026 0.974 34 H 0.022 0.978 35 H 0.260 0.740 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 -10.549 -14.364 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.115 3.885 3 H 0.146 0.854 4 C -0.067 4.067 5 C -0.225 4.225 6 C -0.232 4.232 7 C -0.114 4.114 8 O -0.057 6.057 9 N -0.324 5.324 10 C 0.307 3.693 11 O -0.393 6.393 12 C -0.173 4.173 13 C 0.001 3.999 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.026 4.026 23 C -0.237 4.237 24 C -0.224 4.224 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.216 0.784 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.137 0.863 37 H 0.165 0.835 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.224 -11.009 -13.415 20.667 hybrid contribution 0.510 0.907 -0.675 1.240 sum -10.714 -10.102 -14.090 20.381 Atomic orbital electron populations 1.22207 0.93267 1.03143 1.03292 1.19761 0.94724 0.95559 0.78475 0.85443 1.22809 1.04825 0.80970 0.98077 1.21608 1.06115 1.00805 0.93938 1.21794 1.07414 0.92249 1.01786 1.24023 1.03125 1.00319 0.83972 1.84069 1.64402 1.24416 1.32848 1.47625 1.51789 1.10726 1.22300 1.21653 0.76031 0.89493 0.82169 1.90440 1.54260 1.68354 1.26251 1.21970 1.01901 0.89783 1.03635 1.18901 0.93213 0.95464 0.92348 1.21236 1.27128 0.98490 1.09603 0.92570 1.25017 0.96219 0.97974 0.95104 1.70003 1.32198 1.36995 1.13580 0.86549 0.78414 0.84895 0.78187 1.19737 1.20998 1.21031 1.21434 0.99523 0.81219 1.00429 1.24138 1.01912 1.03553 0.94052 1.23136 0.96597 0.98726 1.03924 0.90743 0.90862 0.91893 0.83260 0.83628 0.78450 0.90326 0.90012 0.95581 0.95956 0.92996 0.86288 0.83462 0.90044 0.89289 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.18 37.16 0.34 -1.23 16 2 C 0.22 2.71 3.00 -69.08 -0.21 2.50 16 3 H 0.13 1.52 5.78 -51.93 -0.30 1.22 16 4 C -0.02 -0.19 6.07 -35.62 -0.22 -0.41 16 5 C -0.20 -2.39 10.80 -39.70 -0.43 -2.82 16 6 C -0.21 -2.25 10.91 -39.70 -0.43 -2.68 16 7 C -0.05 -0.48 12.09 29.42 0.36 -0.12 16 8 O -0.16 -2.04 9.17 5.70 0.05 -1.98 16 9 N -0.59 -9.09 2.72 -159.89 -0.43 -9.53 16 10 C 0.52 10.00 7.43 -10.98 -0.08 9.92 16 11 O -0.52 -11.73 11.86 5.56 0.07 -11.67 16 12 C -0.13 -2.69 3.96 -27.88 -0.11 -2.80 16 13 C 0.04 1.02 4.28 -27.88 -0.12 0.90 16 14 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.08 1.12 4.77 -67.92 -0.32 0.80 16 23 C -0.20 -3.06 9.64 -26.69 -0.26 -3.31 16 24 C -0.19 -2.77 9.90 -26.69 -0.26 -3.03 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.61 6.93 -51.93 -0.36 0.25 16 28 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 29 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 32 H 0.08 1.48 7.86 -51.93 -0.41 1.07 16 33 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16 34 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.12 1.47 6.86 -51.93 -0.36 1.11 16 37 H 0.15 2.79 4.96 -53.39 -0.26 2.52 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.64 7.82 -51.93 -0.41 1.24 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -33.34 331.39 -7.60 -40.94 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.84 Total: 3.05 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -2.16 Total: -15.77 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.30 Total: -36.09 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.12 Total: -13.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.34 -7.60 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361678003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.618 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds