Wall clock time and date at job start Thu Apr 9 2020 13:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47162 * 2 1 4 4 C 1.50703 * 109.46986 * 119.99149 * 2 1 3 5 5 C 1.34514 * 125.79116 * 259.71890 * 4 2 1 6 6 C 1.41387 * 106.83556 * 179.89166 * 5 4 2 7 7 C 1.34511 * 106.84457 * 0.36961 * 6 5 4 8 8 O 1.34303 * 108.41877 * 359.77446 * 7 6 5 9 9 N 1.46499 * 109.47633 * 239.99817 * 2 1 3 10 10 C 1.34776 * 120.00122 * 119.99844 * 9 2 1 11 11 O 1.21278 * 119.99472 * 185.93353 * 10 9 2 12 12 C 1.50693 * 119.99988 * 5.94097 * 10 9 2 13 13 C 1.53007 * 109.47095 * 174.98197 * 12 10 9 14 14 C 1.50701 * 109.47081 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00066 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99698 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00104 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00208 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47178 * 90.00256 * 18 16 14 20 20 H 1.48498 * 109.46990 * 210.00306 * 18 16 14 21 21 H 1.48499 * 109.47179 * 330.00034 * 18 16 14 22 22 C 1.46502 * 119.99469 * 300.00123 * 9 2 1 23 23 C 1.53002 * 117.49759 * 196.52879 * 22 9 2 24 24 C 1.52999 * 117.49791 * 127.86927 * 22 9 2 25 25 H 1.08999 * 109.47438 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47826 * 300.00619 * 1 2 3 27 27 H 1.09008 * 109.47061 * 60.00794 * 1 2 3 28 28 H 1.07995 * 126.57824 * 0.02562 * 5 4 2 29 29 H 1.08006 * 126.57571 * 180.16838 * 6 5 4 30 30 H 1.08000 * 125.78963 * 179.75196 * 7 6 5 31 31 H 1.08992 * 109.47731 * 54.98036 * 12 10 9 32 32 H 1.09009 * 109.47026 * 294.97647 * 12 10 9 33 33 H 1.08997 * 109.47029 * 299.99917 * 13 12 10 34 34 H 1.09001 * 109.46738 * 59.99317 * 13 12 10 35 35 H 0.97000 * 120.00614 * 179.97438 * 17 16 14 36 36 H 1.09001 * 115.55176 * 342.19980 * 22 9 2 37 37 H 1.09003 * 117.49813 * 0.02562 * 23 22 9 38 38 H 1.08994 * 117.50065 * 145.01520 * 23 22 9 39 39 H 1.08994 * 117.49781 * 214.97500 * 24 22 9 40 40 H 1.09005 * 117.49806 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 2.4781 -0.1187 2.3534 6 6 2.8441 -1.1540 3.2441 7 6 2.6078 -2.3161 2.6092 8 8 2.1162 -2.0412 1.3900 9 7 2.0184 -0.6906 -1.1961 10 6 2.7933 -0.0356 -2.0832 11 8 3.1086 -0.5715 -3.1245 12 6 3.2679 1.3624 -1.7812 13 6 4.2244 1.8252 -2.8821 14 6 4.6985 3.2235 -2.5804 15 1 4.3520 3.7314 -1.6926 16 6 5.5739 3.8547 -3.4385 17 7 5.9881 5.0748 -3.1750 18 14 6.1727 2.9765 -4.9746 19 1 5.2497 3.2653 -6.1015 20 1 7.5367 3.4531 -5.3173 21 1 6.2077 1.5128 -4.7261 22 6 1.6645 -2.0932 -1.4278 23 6 2.4914 -2.8702 -2.4542 24 6 1.0560 -2.4534 -2.7846 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3635 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 2.5419 0.9431 2.5397 29 1 3.2408 -1.0346 4.2415 30 1 2.7840 -3.3027 3.0115 31 1 3.7861 1.3710 -0.8224 32 1 2.4114 2.0353 -1.7375 33 1 5.0807 1.1523 -2.9260 34 1 3.7060 1.8165 -3.8410 35 1 6.6042 5.5188 -3.7784 36 1 1.3053 -2.6379 -0.5546 37 1 3.2990 -2.3379 -2.9568 38 1 2.6760 -3.9260 -2.2565 39 1 0.2969 -3.2353 -2.8041 40 1 0.9194 -1.6468 -3.5050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361678010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:53 Heat of formation + Delta-G solvation = 15.231660 kcal Electronic energy + Delta-G solvation = -21973.972478 eV Core-core repulsion = 18757.014631 eV Total energy + Delta-G solvation = -3216.957847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.67959 -40.15040 -36.50932 -35.48421 -33.40160 -33.04388 -31.36406 -30.65854 -28.59377 -26.33917 -23.72730 -23.03178 -22.18296 -21.70095 -20.71077 -20.54566 -18.73202 -17.60480 -16.91496 -16.41261 -16.10038 -15.82523 -15.35773 -14.46192 -14.23037 -14.02464 -13.62261 -13.41855 -13.16802 -13.07709 -12.82932 -12.72456 -12.56432 -12.40550 -11.92295 -11.71625 -11.35973 -11.17098 -11.03514 -10.83596 -10.22945 -10.11322 -10.04759 -9.98401 -9.77576 -9.20171 -8.99064 -8.55798 -8.51887 -8.31063 -6.03847 -4.02701 1.61973 2.51452 2.77183 2.99241 3.08877 3.37431 3.44124 3.54588 4.08393 4.39102 4.50184 4.76292 4.85847 4.89516 5.01214 5.05191 5.12187 5.25190 5.28771 5.31784 5.54355 5.57367 5.67420 5.76473 5.83681 5.85106 5.93380 5.97022 6.02247 6.05535 6.20402 6.39707 6.50146 6.63263 6.88091 7.03898 7.34038 7.40686 7.55558 7.77973 8.46938 8.57209 8.98697 9.59208 11.08945 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.005200 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.164038 B = 5382.918161 C = 6244.039022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.219 3.781 3 H 0.129 0.871 4 C -0.018 4.018 5 C -0.201 4.201 6 C -0.211 4.211 7 C -0.047 4.047 8 O -0.169 6.169 9 N -0.590 5.590 10 C 0.514 3.486 11 O -0.524 6.524 12 C -0.126 4.126 13 C 0.003 3.997 14 C -0.525 4.525 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.903 5.903 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.262 1.262 22 C 0.075 3.925 23 C -0.193 4.193 24 C -0.188 4.188 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.200 0.800 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 -14.977 11.562 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.115 3.885 3 H 0.146 0.854 4 C -0.069 4.069 5 C -0.221 4.221 6 C -0.230 4.230 7 C -0.114 4.114 8 O -0.064 6.064 9 N -0.323 5.323 10 C 0.306 3.694 11 O -0.400 6.400 12 C -0.165 4.165 13 C -0.035 4.035 14 C -0.563 4.563 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.542 5.542 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.029 4.029 23 C -0.230 4.230 24 C -0.227 4.227 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.216 0.784 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.509 -15.306 10.699 21.937 hybrid contribution 0.463 -0.308 -0.334 0.649 sum -11.046 -15.614 10.365 21.754 Atomic orbital electron populations 1.22190 0.93057 1.03263 1.03249 1.19801 0.94881 0.95545 0.78272 0.85352 1.22811 1.04995 0.80853 0.98248 1.21638 1.05613 1.00923 0.93918 1.21815 1.07217 0.92203 1.01811 1.24039 1.03227 1.00381 0.83802 1.84041 1.64928 1.24573 1.32900 1.47619 1.51491 1.10626 1.22535 1.21607 0.76184 0.89127 0.82531 1.90501 1.56445 1.68063 1.25001 1.21775 1.01448 0.90155 1.03152 1.19367 0.94084 0.96768 0.93273 1.21087 1.27296 0.97822 1.10055 0.90925 1.24954 0.95671 0.94622 0.97876 1.69905 1.33668 1.12711 1.37907 0.86807 0.78029 0.81113 0.83671 1.20213 1.21446 1.18592 1.21605 1.04928 0.82720 0.93625 1.23799 0.97185 0.99366 1.02643 1.23237 0.96542 1.03511 0.99420 0.91780 0.90830 0.90823 0.83090 0.83513 0.78371 0.89636 0.89440 0.95944 0.96079 0.92705 0.85554 0.84557 0.89776 0.89185 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.18 37.16 0.34 -1.19 16 2 C 0.22 2.63 3.00 -69.08 -0.21 2.42 16 3 H 0.13 1.49 5.80 -51.92 -0.30 1.19 16 4 C -0.02 -0.21 6.07 -35.62 -0.22 -0.43 16 5 C -0.20 -2.29 10.80 -39.70 -0.43 -2.72 16 6 C -0.21 -2.16 10.91 -39.70 -0.43 -2.59 16 7 C -0.05 -0.46 12.09 29.41 0.36 -0.10 16 8 O -0.17 -2.03 8.31 5.71 0.05 -1.99 16 9 N -0.59 -8.70 2.72 -159.90 -0.43 -9.14 16 10 C 0.51 9.48 7.46 -10.99 -0.08 9.40 16 11 O -0.52 -11.18 11.73 5.56 0.07 -11.11 16 12 C -0.13 -2.43 3.96 -27.88 -0.11 -2.54 16 13 C 0.00 0.07 3.34 -27.88 -0.09 -0.02 16 14 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 18 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 22 C 0.08 1.03 5.16 -67.93 -0.35 0.68 16 23 C -0.19 -2.84 9.63 -26.69 -0.26 -3.10 16 24 C -0.19 -2.55 9.88 -26.69 -0.26 -2.81 16 25 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.20 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.09 1.56 7.80 -51.93 -0.41 1.16 16 32 H 0.09 1.53 7.78 -51.92 -0.40 1.13 16 33 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 34 H 0.02 0.54 7.47 -51.93 -0.39 0.15 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.13 1.55 6.29 -51.93 -0.33 1.23 16 37 H 0.14 2.49 5.23 -52.09 -0.27 2.21 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.52 7.59 -51.93 -0.39 1.12 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -33.42 327.38 -7.27 -40.68 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.81 Total: 2.08 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.18 Total: -16.26 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.34 Total: -36.24 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.11 Total: -13.10 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.42 -7.27 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361678010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.916 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds