Wall clock time and date at job start Thu Apr 9 2020 13:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47162 * 2 1 4 4 C 1.50703 * 109.46986 * 119.99149 * 2 1 3 5 5 C 1.34514 * 125.79116 * 259.71890 * 4 2 1 6 6 C 1.41387 * 106.83556 * 179.89166 * 5 4 2 7 7 C 1.34511 * 106.84457 * 0.36961 * 6 5 4 8 8 O 1.34303 * 108.41877 * 359.77446 * 7 6 5 9 9 N 1.46499 * 109.47633 * 239.99817 * 2 1 3 10 10 C 1.34776 * 120.00122 * 119.99844 * 9 2 1 11 11 O 1.21278 * 119.99472 * 185.93353 * 10 9 2 12 12 C 1.50693 * 119.99988 * 5.94097 * 10 9 2 13 13 C 1.53007 * 109.47095 * 174.98197 * 12 10 9 14 14 C 1.50701 * 109.47081 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00066 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99698 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00104 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00208 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47178 * 90.00256 * 18 16 14 20 20 H 1.48498 * 109.46990 * 210.00306 * 18 16 14 21 21 H 1.48499 * 109.47179 * 330.00034 * 18 16 14 22 22 C 1.46502 * 119.99469 * 300.00123 * 9 2 1 23 23 C 1.53002 * 117.49759 * 196.52879 * 22 9 2 24 24 C 1.52999 * 117.49791 * 127.86927 * 22 9 2 25 25 H 1.08999 * 109.47438 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47826 * 300.00619 * 1 2 3 27 27 H 1.09008 * 109.47061 * 60.00794 * 1 2 3 28 28 H 1.07995 * 126.57824 * 0.02562 * 5 4 2 29 29 H 1.08006 * 126.57571 * 180.16838 * 6 5 4 30 30 H 1.08000 * 125.78963 * 179.75196 * 7 6 5 31 31 H 1.08992 * 109.47731 * 54.98036 * 12 10 9 32 32 H 1.09009 * 109.47026 * 294.97647 * 12 10 9 33 33 H 1.08997 * 109.47029 * 299.99917 * 13 12 10 34 34 H 1.09001 * 109.46738 * 59.99317 * 13 12 10 35 35 H 0.97000 * 120.00614 * 179.97438 * 17 16 14 36 36 H 1.09001 * 115.55176 * 342.19980 * 22 9 2 37 37 H 1.09003 * 117.49813 * 0.02562 * 23 22 9 38 38 H 1.08994 * 117.50065 * 145.01520 * 23 22 9 39 39 H 1.08994 * 117.49781 * 214.97500 * 24 22 9 40 40 H 1.09005 * 117.49806 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 2.4781 -0.1187 2.3534 6 6 2.8441 -1.1540 3.2441 7 6 2.6078 -2.3161 2.6092 8 8 2.1162 -2.0412 1.3900 9 7 2.0184 -0.6906 -1.1961 10 6 2.7933 -0.0356 -2.0832 11 8 3.1086 -0.5715 -3.1245 12 6 3.2679 1.3624 -1.7812 13 6 4.2244 1.8252 -2.8821 14 6 4.6985 3.2235 -2.5804 15 1 4.3520 3.7314 -1.6926 16 6 5.5739 3.8547 -3.4385 17 7 5.9881 5.0748 -3.1750 18 14 6.1727 2.9765 -4.9746 19 1 5.2497 3.2653 -6.1015 20 1 7.5367 3.4531 -5.3173 21 1 6.2077 1.5128 -4.7261 22 6 1.6645 -2.0932 -1.4278 23 6 2.4914 -2.8702 -2.4542 24 6 1.0560 -2.4534 -2.7846 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3635 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 2.5419 0.9431 2.5397 29 1 3.2408 -1.0346 4.2415 30 1 2.7840 -3.3027 3.0115 31 1 3.7861 1.3710 -0.8224 32 1 2.4114 2.0353 -1.7375 33 1 5.0807 1.1523 -2.9260 34 1 3.7060 1.8165 -3.8410 35 1 6.6042 5.5188 -3.7784 36 1 1.3053 -2.6379 -0.5546 37 1 3.2990 -2.3379 -2.9568 38 1 2.6760 -3.9260 -2.2565 39 1 0.2969 -3.2353 -2.8041 40 1 0.9194 -1.6468 -3.5050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361678010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:52 Heat of formation + Delta-G solvation = -4.481706 kcal Electronic energy + Delta-G solvation = -21974.827314 eV Core-core repulsion = 18757.014631 eV Total energy + Delta-G solvation = -3217.812683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.50373 -41.45739 -37.81049 -36.59276 -35.41568 -33.88041 -33.23597 -31.84551 -29.38731 -28.20734 -24.62262 -24.52214 -23.29440 -22.62070 -22.26081 -21.57105 -20.04250 -19.11961 -18.30943 -17.65413 -17.21020 -16.88272 -16.64235 -16.23222 -15.57094 -15.37971 -14.93047 -14.65271 -14.53178 -14.41250 -14.09692 -13.72665 -13.65208 -13.43752 -13.36035 -12.96928 -12.77379 -12.54583 -12.31779 -12.04355 -12.02770 -11.94320 -11.77355 -11.40126 -11.27806 -10.80033 -10.78649 -10.42662 -9.51574 -9.37623 -8.32072 -6.34778 0.78949 1.32029 1.34142 1.48578 1.49978 1.67049 1.90252 2.12342 2.33977 2.98956 3.03775 3.51428 3.54656 3.94611 3.97364 4.05561 4.14838 4.21157 4.23331 4.28781 4.36041 4.41805 4.59996 4.78275 4.79892 4.81469 4.93052 4.98296 5.04754 5.07283 5.18459 5.27186 5.30218 5.36828 5.40488 5.59001 5.63172 5.71050 6.15830 6.22991 6.34894 6.71155 7.15565 7.30574 8.83535 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.005200 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.164038 B = 5382.918161 C = 6244.039022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.213 3.787 3 H 0.129 0.871 4 C -0.037 4.037 5 C -0.210 4.210 6 C -0.226 4.226 7 C -0.043 4.043 8 O -0.182 6.182 9 N -0.581 5.581 10 C 0.513 3.487 11 O -0.560 6.560 12 C -0.118 4.118 13 C 0.009 3.991 14 C -0.528 4.528 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.942 5.942 18 Si 0.935 3.065 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C 0.078 3.922 23 C -0.206 4.206 24 C -0.177 4.177 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.159 0.841 29 H 0.166 0.834 30 H 0.235 0.765 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.007 0.993 34 H 0.011 0.989 35 H 0.267 0.733 36 H 0.149 0.851 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 -16.802 12.620 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.110 3.890 3 H 0.146 0.854 4 C -0.088 4.088 5 C -0.229 4.229 6 C -0.245 4.245 7 C -0.110 4.110 8 O -0.078 6.078 9 N -0.312 5.312 10 C 0.304 3.696 11 O -0.439 6.439 12 C -0.158 4.158 13 C -0.029 4.029 14 C -0.565 4.565 15 H 0.070 0.930 16 C -0.181 4.181 17 N -0.583 5.583 18 Si 0.760 3.240 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.025 4.025 23 C -0.243 4.243 24 C -0.216 4.216 25 H 0.086 0.914 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.176 0.824 29 H 0.183 0.817 30 H 0.251 0.749 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.025 0.975 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.166 0.834 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.140 0.860 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.672 -17.135 11.794 24.357 hybrid contribution 0.803 0.257 -0.530 0.996 sum -11.869 -16.878 11.263 23.507 Atomic orbital electron populations 1.22152 0.90999 1.03773 1.04107 1.20030 0.96463 0.95278 0.77183 0.85387 1.22733 1.06442 0.81212 0.98412 1.21924 1.05099 1.01771 0.94156 1.22139 1.07610 0.92054 1.02709 1.24792 1.01512 1.01879 0.82787 1.84011 1.65380 1.24411 1.34014 1.47571 1.50055 1.11113 1.22445 1.21299 0.76759 0.88754 0.82774 1.90519 1.58109 1.68637 1.26620 1.21585 1.01115 0.91602 1.01477 1.19195 0.94572 0.94421 0.94743 1.21391 1.26787 0.99261 1.09109 0.92990 1.25747 0.96126 0.95288 1.00945 1.70011 1.34752 1.14154 1.39353 0.85873 0.78064 0.79717 0.80320 1.19308 1.20369 1.18790 1.21812 1.04414 0.81912 0.94384 1.23691 0.96821 1.00376 1.03461 1.23229 0.96520 1.03420 0.98415 0.91418 0.88928 0.90976 0.82371 0.81654 0.74925 0.88655 0.87640 0.97488 0.97053 0.92366 0.83412 0.88149 0.87441 0.86020 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.18 71.98 0.66 -1.93 16 2 C 0.21 4.78 3.00 44.24 0.13 4.91 16 3 H 0.13 2.82 5.80 -2.38 -0.01 2.80 16 4 C -0.04 -0.83 6.07 24.83 0.15 -0.68 16 5 C -0.21 -4.42 10.80 22.19 0.24 -4.18 16 6 C -0.23 -4.09 10.91 22.19 0.24 -3.84 16 7 C -0.04 -0.71 12.09 66.97 0.81 0.09 16 8 O -0.18 -3.94 8.31 -2.50 -0.02 -3.96 16 9 N -0.58 -16.51 2.72 -778.18 -2.12 -18.63 16 10 C 0.51 18.90 7.46 87.65 0.65 19.55 16 11 O -0.56 -24.31 11.73 -3.02 -0.04 -24.34 16 12 C -0.12 -4.56 3.96 29.85 0.12 -4.45 16 13 C 0.01 0.43 3.34 29.85 0.10 0.53 16 14 C -0.53 -30.39 9.66 25.60 0.25 -30.14 16 15 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 16 C 0.02 1.00 5.47 84.65 0.46 1.46 16 17 N -0.94 -58.90 13.96 21.44 0.30 -58.60 16 18 Si 0.94 46.96 27.47 68.60 1.88 48.85 16 19 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 21 H -0.26 -13.21 6.54 99.48 0.65 -12.56 16 22 C 0.08 2.01 5.16 44.99 0.23 2.24 16 23 C -0.21 -5.88 9.63 30.62 0.29 -5.59 16 24 C -0.18 -4.51 9.88 30.62 0.30 -4.21 16 25 H 0.07 1.11 7.65 -2.39 -0.02 1.09 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.23 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.10 3.46 7.80 -2.39 -0.02 3.44 16 32 H 0.11 3.64 7.78 -2.38 -0.02 3.63 16 33 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 34 H 0.01 0.58 7.47 -2.39 -0.02 0.56 16 35 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.15 3.20 6.29 -2.39 -0.02 3.19 16 37 H 0.10 3.73 5.23 -4.89 -0.03 3.70 16 38 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 2.24 7.59 -2.38 -0.02 2.22 16 Total: -1.00 -72.89 327.38 5.62 -67.27 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.96 Total: 15.64 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.65 Total: -26.23 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -1.82 Total: -77.23 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.06 Total: -28.30 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.88 Total: 48.85 kcal Total: -72.89 5.62 -67.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361678010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.789 kcal (2) G-P(sol) polarization free energy of solvation -72.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds