Wall clock time and date at job start Thu Apr 9 2020 13:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.55003 * 2 1 4 4 C 1.54997 * 110.75434 * 122.96688 * 2 1 3 5 5 C 1.54805 * 102.09505 * 155.59355 * 4 2 1 6 6 H 1.08993 * 110.60542 * 97.85273 * 5 4 2 7 7 N 1.46909 * 110.48460 * 220.44859 * 5 4 2 8 8 C 1.46900 * 110.99256 * 201.21990 * 7 5 4 9 9 C 1.50708 * 109.46755 * 179.97438 * 8 7 5 10 10 C 1.38300 * 119.93031 * 89.99649 * 9 8 7 11 11 C 1.38103 * 120.06639 * 180.02562 * 10 9 8 12 12 C 1.38875 * 119.93000 * 359.97438 * 11 10 9 13 13 O 1.35753 * 120.06756 * 180.02562 * 12 11 10 14 14 C 1.34830 * 117.00114 * 5.53168 * 13 12 11 15 15 H 1.07999 * 120.00012 * 354.94279 * 14 13 12 16 16 C 1.38649 * 120.00144 * 175.21759 * 14 13 12 17 17 N 1.31558 * 119.99809 * 359.72816 * 16 14 13 18 18 Si 1.86802 * 120.00154 * 179.72492 * 16 14 13 19 19 H 1.48496 * 109.46851 * 90.00224 * 18 16 14 20 20 H 1.48495 * 109.47028 * 210.00292 * 18 16 14 21 21 H 1.48504 * 109.47013 * 330.00171 * 18 16 14 22 22 C 1.38884 * 119.86261 * 0.27199 * 12 11 10 23 23 C 1.38092 * 119.92795 * 359.45333 * 22 12 11 24 24 C 1.54099 * 104.18716 * 339.11777 * 5 4 2 25 25 O 1.43744 * 107.29611 * 357.97412 * 24 5 4 26 26 H 1.08994 * 109.47092 * 181.42711 * 1 2 3 27 27 H 1.09000 * 109.47239 * 301.43051 * 1 2 3 28 28 H 1.09005 * 109.46900 * 61.42648 * 1 2 3 29 29 H 1.09007 * 110.90471 * 37.38970 * 4 2 1 30 30 H 1.09001 * 110.90672 * 273.79053 * 4 2 1 31 31 H 1.00902 * 110.99632 * 325.16680 * 7 5 4 32 32 H 1.08992 * 109.47650 * 59.99904 * 8 7 5 33 33 H 1.08997 * 109.47255 * 299.99048 * 8 7 5 34 34 H 1.08003 * 119.96829 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.03098 * 179.97438 * 11 10 9 36 36 H 0.97009 * 119.99805 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.03250 * 179.72259 * 22 12 11 38 38 H 1.08010 * 119.96710 * 180.27685 * 23 22 12 39 39 H 1.09004 * 109.87955 * 117.39644 * 24 5 4 40 40 H 1.09002 * 109.88304 * 238.54832 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0792 -0.7887 1.2160 5 6 3.4831 -1.2127 0.7203 6 1 4.2449 -0.5295 1.0956 7 7 3.7804 -2.5903 1.1351 8 6 5.2281 -2.8397 1.1331 9 6 5.4937 -4.2594 1.5635 10 6 5.5521 -5.2675 0.6185 11 6 5.7948 -6.5695 1.0098 12 6 5.9810 -6.8658 2.3537 13 8 6.2203 -8.1446 2.7414 14 6 6.3788 -9.0608 1.7650 15 1 6.2328 -8.7803 0.7324 16 6 6.7238 -10.3645 2.0870 17 7 6.9017 -10.7063 3.3449 18 14 6.9360 -11.6357 0.7347 19 1 8.3481 -11.6387 0.2754 20 1 6.5831 -12.9795 1.2589 21 1 6.0454 -11.2993 -0.4050 22 6 5.9167 -5.8520 3.3008 23 6 5.6793 -4.5513 2.9025 24 6 3.3853 -1.1210 -0.8148 25 8 2.0385 -0.7336 -1.1348 26 1 -0.3633 -1.0273 0.0256 27 1 -0.3634 0.5359 0.8769 28 1 -0.3633 0.4915 -0.9026 29 1 1.4605 -1.6614 1.4252 30 1 2.1541 -0.1472 2.0941 31 1 3.3803 -2.7898 2.0397 32 1 5.7160 -2.1534 1.8251 33 1 5.6221 -2.6845 0.1288 34 1 5.4068 -5.0364 -0.4265 35 1 5.8398 -7.3564 0.2714 36 1 7.1428 -11.6186 3.5702 37 1 6.0566 -6.0801 4.3471 38 1 5.6336 -3.7617 3.6381 39 1 4.0846 -0.3721 -1.1867 40 1 3.6073 -2.0913 -1.2591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402305615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:10 Heat of formation + Delta-G solvation = -71.822222 kcal Electronic energy + Delta-G solvation = -20583.994204 eV Core-core repulsion = 17363.261417 eV Total energy + Delta-G solvation = -3220.732787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85563 -40.47947 -38.57935 -36.35176 -34.30624 -33.06364 -32.05838 -31.76416 -29.48769 -27.46283 -26.93886 -25.34973 -23.60955 -22.32317 -21.82235 -21.62049 -19.83491 -18.83112 -17.81867 -17.16686 -16.43988 -16.40868 -16.25138 -16.01165 -15.70149 -15.42482 -15.21841 -14.85138 -14.55062 -14.25284 -14.07830 -13.59072 -13.37232 -13.31379 -13.03827 -12.97730 -12.66846 -12.45619 -12.28775 -12.20428 -12.14075 -12.06601 -11.89444 -11.64971 -11.17507 -10.79369 -10.56317 -9.77000 -9.37972 -8.90526 -8.47679 -6.15674 0.61199 0.68007 1.34757 1.43895 1.52167 2.17671 2.76916 2.96948 3.09526 3.37918 3.51777 3.56126 3.89489 4.05640 4.06567 4.16641 4.21290 4.22634 4.38784 4.49074 4.53869 4.61215 4.62537 4.71285 4.80217 4.84444 4.90261 4.95524 5.01593 5.09760 5.15802 5.16792 5.30241 5.31005 5.57285 5.72623 5.81823 5.99094 6.03103 6.13757 6.25512 6.44990 6.97328 7.78206 8.75635 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032348 B = 0.002925 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.390416 B = 9571.026484 C = 9914.189800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.082 0.918 4 C -0.148 4.148 5 C 0.055 3.945 6 H 0.074 0.926 7 N -0.686 5.686 8 C 0.121 3.879 9 C -0.158 4.158 10 C -0.051 4.051 11 C -0.246 4.246 12 C 0.114 3.886 13 O -0.233 6.233 14 C -0.414 4.414 15 H 0.100 0.900 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.254 1.254 22 C -0.205 4.205 23 C -0.058 4.058 24 C 0.052 3.948 25 O -0.402 6.402 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.348 0.652 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.273 0.727 37 H 0.113 0.887 38 H 0.149 0.851 39 H 0.068 0.932 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 22.500 -5.634 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.100 0.900 4 C -0.185 4.185 5 C -0.055 4.055 6 H 0.092 0.908 7 N -0.319 5.319 8 C -0.007 4.007 9 C -0.160 4.160 10 C -0.070 4.070 11 C -0.265 4.265 12 C 0.063 3.937 13 O -0.140 6.140 14 C -0.490 4.490 15 H 0.117 0.883 16 C -0.220 4.220 17 N -0.559 5.559 18 Si 0.837 3.163 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.178 1.178 22 C -0.224 4.224 23 C -0.076 4.076 24 C -0.025 4.025 25 O -0.322 6.322 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.167 0.833 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.151 0.849 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.167 0.833 39 H 0.086 0.914 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.903 21.934 -6.116 24.103 hybrid contribution 0.649 -0.722 0.603 1.143 sum -7.254 21.212 -5.513 23.086 Atomic orbital electron populations 1.21790 0.92496 1.02662 1.03302 1.23268 0.95943 0.95454 0.84374 0.90010 1.23357 0.94955 1.01141 0.99085 1.22945 0.97675 0.89519 0.95359 0.90815 1.60574 1.12403 1.23258 1.35660 1.20679 0.87956 0.90785 1.01246 1.19612 1.07604 0.95962 0.92776 1.20903 0.95305 0.90855 0.99899 1.21253 1.11490 0.98597 0.95137 1.19967 0.94060 0.85479 0.94170 1.83937 1.79830 1.14002 1.36192 1.21806 1.49162 0.89534 0.88466 0.88267 1.26580 0.95759 0.99260 1.00427 1.70185 1.46343 1.20166 1.19241 0.84594 0.79461 0.75921 0.76286 1.18748 1.19501 1.17772 1.20451 1.11339 0.92402 0.98236 1.20896 0.96380 0.94309 0.96033 1.23291 0.83761 1.00439 0.95046 1.88875 1.28708 1.74256 1.40323 0.92840 0.89092 0.91973 0.90399 0.88051 0.83261 0.92911 0.90158 0.84923 0.86709 0.91827 0.86887 0.83316 0.91362 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 71.98 0.70 -1.23 16 2 C 0.07 1.03 3.97 31.28 0.12 1.16 16 3 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 4 C -0.15 -2.08 6.07 31.89 0.19 -1.89 16 5 C 0.05 0.90 3.36 45.90 0.15 1.05 16 6 H 0.07 0.98 7.87 -2.39 -0.02 0.96 16 7 N -0.69 -14.02 6.17 -490.46 -3.03 -17.05 16 8 C 0.12 2.59 5.65 85.56 0.48 3.08 16 9 C -0.16 -4.76 5.40 -19.83 -0.11 -4.87 16 10 C -0.05 -1.79 9.69 22.25 0.22 -1.58 16 11 C -0.25 -10.91 9.17 22.39 0.21 -10.71 16 12 C 0.11 5.72 6.65 22.58 0.15 5.87 16 13 O -0.23 -14.22 9.76 -22.77 -0.22 -14.44 16 14 C -0.41 -24.48 9.49 67.92 0.64 -23.83 16 15 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 16 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 17 N -0.92 -57.09 13.67 21.61 0.30 -56.80 16 18 Si 1.02 43.44 29.55 68.60 2.03 45.47 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 22 C -0.21 -8.64 9.99 22.39 0.22 -8.42 16 23 C -0.06 -1.84 9.69 22.25 0.22 -1.63 16 24 C 0.05 1.00 7.42 72.35 0.54 1.54 16 25 O -0.40 -9.02 11.22 -148.98 -1.67 -10.69 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.08 1.30 7.93 -2.38 -0.02 1.28 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.35 6.92 8.42 -89.69 -0.75 6.16 16 32 H 0.05 0.94 8.02 -2.39 -0.02 0.92 16 33 H 0.08 1.63 8.06 -2.39 -0.02 1.61 16 34 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.12 5.25 5.64 -2.91 -0.02 5.24 16 36 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 37 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 38 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 39 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.08 1.76 7.93 -2.39 -0.02 1.74 16 Total: -1.00 -71.85 333.80 1.88 -69.97 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.28 Total: 25.86 kcal Atomic # 6 Polarization: -46.51 SS G_CDS: 4.20 Total: -42.31 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -2.73 Total: -73.84 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -1.89 Total: -25.13 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.85 1.88 -69.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402305615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.857 kcal (2) G-P(sol) polarization free energy of solvation -71.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds