Wall clock time and date at job start Thu Apr 9 2020 13:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34222 * 116.99842 * 2 1 4 4 O 1.20824 * 120.00399 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99703 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47236 * 60.00315 * 5 3 2 7 7 C 1.53000 * 109.47169 * 180.02562 * 5 3 2 8 8 C 1.53005 * 109.47202 * 299.99966 * 5 3 2 9 9 H 1.08998 * 109.47064 * 185.81862 * 8 5 3 10 10 N 1.46898 * 109.46646 * 65.82069 * 8 5 3 11 11 C 1.46894 * 111.00450 * 84.41356 * 10 8 5 12 12 C 1.50699 * 109.47655 * 174.62649 * 11 10 8 13 13 H 1.08001 * 119.99488 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00207 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00124 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99833 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47628 * 89.99668 * 16 14 12 18 18 H 1.48499 * 109.47023 * 210.00241 * 16 14 12 19 19 H 1.48501 * 109.46859 * 329.99614 * 16 14 12 20 20 C 1.50693 * 109.47182 * 305.82038 * 8 5 3 21 21 C 1.38239 * 120.00041 * 260.00291 * 20 8 5 22 22 C 1.38232 * 119.99793 * 179.97438 * 21 20 8 23 23 C 1.38228 * 120.00679 * 359.97135 * 22 21 20 24 24 C 1.38238 * 119.99569 * 359.97438 * 23 22 21 25 25 C 1.38237 * 120.00313 * 0.07184 * 24 23 22 26 26 H 1.08993 * 109.47596 * 59.99851 * 1 2 3 27 27 H 1.09005 * 109.47299 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46892 * 299.99786 * 1 2 3 29 29 H 1.09001 * 109.47397 * 182.01931 * 7 5 3 30 30 H 1.09003 * 109.47083 * 302.02430 * 7 5 3 31 31 H 1.09002 * 109.47364 * 62.01693 * 7 5 3 32 32 H 1.00907 * 111.00217 * 320.45553 * 10 8 5 33 33 H 1.09006 * 109.47127 * 294.63133 * 11 10 8 34 34 H 1.09006 * 109.46887 * 54.62636 * 11 10 8 35 35 H 0.96997 * 120.00140 * 179.97438 * 15 14 12 36 36 H 1.07997 * 119.99689 * 359.97202 * 21 20 8 37 37 H 1.08006 * 119.99800 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.00569 * 179.72711 * 23 22 21 39 39 H 1.08008 * 120.00166 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.00115 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.0002 2.7420 0.0002 8 6 4.1139 0.5809 1.2483 9 1 5.1928 0.7269 1.3015 10 7 3.8170 -0.8561 1.1799 11 6 4.8369 -1.5678 0.3981 12 6 4.5734 -3.0503 0.4599 13 1 3.7321 -3.4261 1.0233 14 6 5.4056 -3.9267 -0.2036 15 7 6.4298 -3.4690 -0.8900 16 14 5.0785 -5.7643 -0.1275 17 1 4.1847 -6.1548 -1.2471 18 1 6.3631 -6.5008 -0.2396 19 1 4.4278 -6.0980 1.1649 20 6 3.4662 1.1699 2.4749 21 6 4.1401 2.1143 3.2265 22 6 3.5457 2.6549 4.3513 23 6 2.2773 2.2517 4.7244 24 6 1.6029 1.3080 3.9722 25 6 2.1976 0.7666 2.8478 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 5.0881 2.7992 -0.0364 30 1 3.5803 3.2455 -0.8706 31 1 3.6412 3.2266 0.9082 32 1 2.8949 -1.0173 0.8032 33 1 4.7976 -1.2347 -0.6390 34 1 5.8236 -1.3567 0.8105 35 1 7.0155 -4.0856 -1.3565 36 1 5.1310 2.4297 2.9348 37 1 4.0724 3.3925 4.9387 38 1 1.8147 2.6708 5.6056 39 1 0.6120 0.9926 4.2638 40 1 1.6709 0.0291 2.2604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411389368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:24 Heat of formation + Delta-G solvation = -63.902665 kcal Electronic energy + Delta-G solvation = -22348.022072 eV Core-core repulsion = 19127.632703 eV Total energy + Delta-G solvation = -3220.389369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79180 -38.94499 -36.57737 -36.18860 -33.25495 -31.59660 -30.64493 -30.52481 -27.87908 -26.89217 -24.59591 -23.77313 -22.43520 -21.42523 -21.04994 -19.71645 -17.56950 -17.23174 -16.26851 -16.22316 -15.98835 -14.97954 -14.85850 -14.54206 -14.42637 -13.85216 -13.47372 -13.26330 -13.07806 -12.80395 -12.33732 -12.29200 -12.14386 -12.10514 -11.99713 -11.42096 -11.33404 -11.20462 -10.85780 -10.78294 -10.64836 -10.61401 -10.50549 -10.11670 -9.89365 -9.22247 -8.66363 -8.50820 -8.41762 -7.35674 -6.02877 -4.03823 1.60209 1.64332 2.42573 2.88149 3.32327 3.38551 3.43311 4.02856 4.42907 4.69626 4.93848 5.02580 5.12906 5.17271 5.20499 5.24724 5.27230 5.33212 5.35058 5.53370 5.58415 5.63516 5.77011 5.78888 5.93707 5.95382 6.01325 6.21535 6.27868 6.32562 6.55715 6.67857 6.72915 6.92107 7.19340 7.24929 7.38053 7.78632 7.92698 8.10861 8.42819 8.60304 9.04695 9.60704 11.08132 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.005548 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.997688 B = 5045.607181 C = 5389.714851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.351 6.351 3 C 0.473 3.527 4 O -0.511 6.511 5 C -0.117 4.117 6 H 0.114 0.886 7 C -0.134 4.134 8 C 0.131 3.869 9 H 0.098 0.902 10 N -0.680 5.680 11 C 0.194 3.806 12 C -0.508 4.508 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.060 4.060 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.122 4.122 25 C -0.103 4.103 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.343 0.657 33 H -0.012 1.012 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 11.765 4.967 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.267 6.267 3 C 0.317 3.683 4 O -0.398 6.398 5 C -0.138 4.138 6 H 0.132 0.868 7 C -0.192 4.192 8 C 0.019 3.981 9 H 0.116 0.884 10 N -0.314 5.314 11 C 0.068 3.932 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.061 4.061 21 C -0.132 4.132 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.121 4.121 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.006 0.994 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.083 11.805 5.450 15.310 hybrid contribution -0.498 -0.762 -0.959 1.322 sum -8.581 11.043 4.492 14.688 Atomic orbital electron populations 1.23269 0.76861 1.03793 1.02129 1.86535 1.23074 1.33308 1.83749 1.23729 0.91922 0.81289 0.71392 1.90607 1.67150 1.36335 1.45754 1.22096 0.87602 1.00429 1.03653 0.86793 1.21694 1.01386 0.92845 1.03268 1.20581 0.99553 0.89958 0.87979 0.88377 1.60886 1.08154 1.03641 1.58718 1.19618 0.90193 0.93269 0.90159 1.21137 1.12329 0.90875 1.30364 0.91942 1.24964 0.95118 0.99104 0.95352 1.69949 1.16057 1.34838 1.33011 0.86500 0.77491 0.85013 0.78424 1.20764 1.21301 1.19790 1.19921 0.94257 0.95313 0.96617 1.21000 0.99774 0.97090 0.95295 1.21025 0.95576 1.00393 0.97169 1.21034 0.95398 0.98474 0.99811 1.21080 0.99737 0.97464 0.95732 1.21116 0.95192 0.98791 0.97013 0.92164 0.87935 0.92064 0.91123 0.92099 0.91430 0.83307 0.99399 0.95351 0.92955 0.86173 0.86473 0.86693 0.86645 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.43 101.05 1.05 1.46 16 2 O -0.35 -5.63 6.47 -39.24 -0.25 -5.89 16 3 C 0.47 7.85 5.08 36.01 0.18 8.04 16 4 O -0.51 -9.05 15.72 -18.75 -0.29 -9.34 16 5 C -0.12 -1.86 2.73 -91.77 -0.25 -2.11 16 6 H 0.11 1.88 7.39 -51.93 -0.38 1.50 16 7 C -0.13 -1.81 8.27 37.16 0.31 -1.50 16 8 C 0.13 2.28 2.08 -68.87 -0.14 2.13 16 9 H 0.10 1.69 7.59 -51.93 -0.39 1.30 16 10 N -0.68 -14.26 5.67 -109.22 -0.62 -14.88 16 11 C 0.19 4.89 5.26 -4.98 -0.03 4.86 16 12 C -0.51 -14.16 9.36 -34.44 -0.32 -14.49 16 13 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 16 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 20 C -0.06 -0.98 4.02 -104.62 -0.42 -1.40 16 21 C -0.11 -1.61 8.71 -39.58 -0.34 -1.95 16 22 C -0.12 -1.59 10.05 -39.59 -0.40 -1.98 16 23 C -0.13 -1.66 10.05 -39.58 -0.40 -2.05 16 24 C -0.12 -1.72 10.05 -39.58 -0.40 -2.11 16 25 C -0.10 -1.66 7.89 -39.58 -0.31 -1.97 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.71 8.13 -51.92 -0.42 0.28 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 31 H 0.07 0.94 6.65 -51.93 -0.35 0.59 16 32 H 0.34 7.04 4.95 -39.29 -0.19 6.85 16 33 H -0.01 -0.31 7.44 -51.93 -0.39 -0.69 16 34 H 0.03 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 36 H 0.12 1.48 8.04 -52.49 -0.42 1.06 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.12 2.04 5.41 -52.49 -0.28 1.76 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -31.47 327.70 -7.82 -39.29 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.74 Total: 6.58 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -1.57 Total: -11.60 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.12 Total: -40.46 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.55 Total: -15.23 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.47 -7.82 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411389368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.612 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds