Wall clock time and date at job start Thu Apr 9 2020 13:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47096 * 2 1 4 4 O 1.42903 * 109.46958 * 119.99465 * 2 1 3 5 5 C 1.42897 * 114.00157 * 270.00023 * 4 2 1 6 6 C 1.53004 * 109.47185 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47114 * 180.02562 * 6 5 4 8 8 C 1.38232 * 120.00002 * 269.72834 * 7 6 5 9 9 C 1.38240 * 119.99696 * 179.76545 * 8 7 6 10 10 C 1.38237 * 119.99702 * 0.51150 * 9 8 7 11 11 C 1.38235 * 120.00026 * 359.74213 * 10 9 8 12 12 C 1.38228 * 120.00283 * 0.02562 * 11 10 9 13 13 C 1.50696 * 109.47496 * 239.99823 * 2 1 3 14 14 O 1.21284 * 120.00096 * 244.99976 * 13 2 1 15 15 N 1.34774 * 119.99838 * 64.99912 * 13 2 1 16 16 C 1.46506 * 120.00072 * 180.02562 * 15 13 2 17 17 C 1.50703 * 109.47289 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99399 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00144 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99733 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46632 * 90.00476 * 21 19 17 23 23 H 1.48496 * 109.46690 * 210.00029 * 21 19 17 24 24 H 1.48498 * 109.47171 * 330.00226 * 21 19 17 25 25 H 1.09003 * 109.46575 * 60.00290 * 1 2 3 26 26 H 1.08997 * 109.46651 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47262 * 300.00178 * 1 2 3 28 28 H 1.08998 * 109.47360 * 299.99982 * 5 4 2 29 29 H 1.09007 * 109.46866 * 60.00194 * 5 4 2 30 30 H 1.08998 * 109.47079 * 300.00304 * 6 5 4 31 31 H 1.08998 * 109.46358 * 60.00337 * 6 5 4 32 32 H 1.07993 * 119.99942 * 0.02562 * 8 7 6 33 33 H 1.07995 * 119.99730 * 180.22933 * 9 8 7 34 34 H 1.07999 * 119.99593 * 179.72159 * 10 9 8 35 35 H 1.08003 * 119.99590 * 179.97438 * 11 10 9 36 36 H 1.07994 * 120.00178 * 179.97438 * 12 11 10 37 37 H 0.97001 * 120.00676 * 359.97438 * 15 13 2 38 38 H 1.09001 * 109.47060 * 300.00359 * 16 15 13 39 39 H 1.09004 * 109.47073 * 59.99848 * 16 15 13 40 40 H 0.96997 * 119.99752 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1831 2.2941 6 6 2.7078 -0.6406 3.4793 7 6 2.9115 0.2627 4.6683 8 6 4.1355 0.8721 4.8717 9 6 4.3209 1.7045 5.9597 10 6 3.2854 1.9191 6.8500 11 6 2.0630 1.3056 6.6494 12 6 1.8762 0.4770 5.5588 13 6 2.0324 -0.7104 -1.2304 14 8 2.6531 -1.7467 -1.1214 15 7 1.7920 -0.1942 -2.4519 16 6 2.2800 -0.8851 -3.6481 17 6 1.8809 -0.1071 -4.8756 18 1 1.3202 0.8104 -4.7746 19 6 2.2324 -0.5662 -6.1272 20 7 2.9155 -1.6833 -6.2500 21 14 1.7370 0.3978 -7.6487 22 1 2.8017 1.3780 -7.9819 23 1 1.5505 -0.5366 -8.7876 24 1 0.4654 1.1182 -7.3860 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.9319 0.9514 2.0450 29 1 1.2537 0.6548 2.5588 30 1 1.9756 -1.4087 3.7282 31 1 3.6540 -1.1126 3.2148 32 1 4.9457 0.7011 4.1784 33 1 5.2760 2.1835 6.1165 34 1 3.4316 2.5659 7.7024 35 1 1.2541 1.4730 7.3452 36 1 0.9213 -0.0026 5.4024 37 1 1.2953 0.6344 -2.5392 38 1 3.3663 -0.9638 -3.6046 39 1 1.8450 -1.8836 -3.6939 40 1 3.1625 -2.0064 -7.1306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451239103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:16 Heat of formation + Delta-G solvation = -75.321432 kcal Electronic energy + Delta-G solvation = -20210.276246 eV Core-core repulsion = 16989.391722 eV Total energy + Delta-G solvation = -3220.884524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.66299 -39.19206 -37.36124 -34.17331 -33.77431 -32.45033 -31.15246 -31.08746 -28.53606 -27.21575 -24.44524 -23.46249 -22.83331 -22.13065 -21.14988 -19.63319 -17.44984 -17.02441 -16.72168 -15.98095 -15.75923 -15.31409 -15.13619 -14.82938 -14.51209 -14.19961 -13.69808 -13.65012 -13.31828 -13.00482 -12.89058 -12.70840 -12.26849 -12.07143 -11.85146 -11.75845 -11.44741 -11.29305 -11.15420 -11.01861 -10.95924 -10.86515 -10.31157 -9.72997 -9.40186 -9.18599 -8.98859 -8.82621 -8.73868 -7.88689 -6.16719 -4.23901 1.06361 1.13454 3.23946 3.26763 3.30928 3.33406 3.35153 3.58942 4.24151 4.40337 4.58190 4.67071 4.77512 4.88460 4.92553 4.97173 5.14681 5.19200 5.23527 5.25403 5.30484 5.31651 5.40346 5.60926 5.65433 5.75430 5.79770 5.84131 5.95882 6.18740 6.19979 6.24635 6.40084 6.74111 7.13399 7.33045 7.44002 7.51893 7.67221 7.96567 8.61173 8.78224 9.09719 9.42651 10.93470 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040445 B = 0.002512 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.136838 B =11143.346062 C =11188.535278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 H 0.080 0.920 4 O -0.356 6.356 5 C 0.066 3.934 6 C -0.080 4.080 7 C -0.078 4.078 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.126 4.126 11 C -0.120 4.120 12 C -0.115 4.115 13 C 0.499 3.501 14 O -0.536 6.536 15 N -0.711 5.711 16 C 0.251 3.749 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.390 0.610 38 H 0.027 0.973 39 H 0.028 0.972 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 8.768 23.664 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.009 3.991 3 H 0.098 0.902 4 O -0.274 6.274 5 C -0.011 4.011 6 C -0.118 4.118 7 C -0.079 4.079 8 C -0.132 4.132 9 C -0.137 4.137 10 C -0.144 4.144 11 C -0.138 4.138 12 C -0.133 4.133 13 C 0.282 3.718 14 O -0.413 6.413 15 N -0.361 5.361 16 C 0.130 3.870 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.222 0.778 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.191 7.664 23.580 24.891 hybrid contribution -0.501 1.209 -0.899 1.587 sum -2.692 8.872 22.681 24.503 Atomic orbital electron populations 1.22208 0.93983 1.03729 1.02659 1.21981 0.94853 0.96197 0.86086 0.90219 1.88034 1.86611 1.33947 1.18837 1.22499 0.99366 0.92904 0.86296 1.20475 1.03516 0.96965 0.90818 1.19793 0.93935 0.97921 0.96210 1.21158 0.97086 0.97061 0.97920 1.21171 0.99091 0.98537 0.94922 1.21164 0.93560 1.00152 0.99504 1.21150 0.97438 0.97422 0.97812 1.21113 0.98726 0.98793 0.94687 1.20194 0.81053 0.86044 0.84467 1.90677 1.40483 1.23546 1.86549 1.46409 1.56146 1.27172 1.06353 1.19124 0.95307 0.92946 0.79606 1.21212 1.37095 1.09153 0.90687 0.91875 1.24960 0.94789 0.95084 0.99232 1.69979 1.37419 1.20605 1.24212 0.86405 0.78894 0.79559 0.81983 1.20466 1.20997 1.19751 0.90741 0.91131 0.91877 0.93198 0.93264 0.89932 0.89741 0.85790 0.86038 0.86220 0.86098 0.85919 0.77756 0.95486 0.95443 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.48 37.16 0.35 -1.76 16 2 C 0.07 1.08 3.13 -27.88 -0.09 1.00 16 3 H 0.08 1.02 7.79 -51.93 -0.40 0.62 16 4 O -0.36 -5.73 9.53 -55.09 -0.52 -6.26 16 5 C 0.07 0.78 5.73 37.16 0.21 0.99 16 6 C -0.08 -0.86 5.72 -27.88 -0.16 -1.01 16 7 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 8 C -0.11 -1.06 9.70 -39.58 -0.38 -1.45 16 9 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 10 C -0.13 -0.98 10.05 -39.58 -0.40 -1.37 16 11 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 12 C -0.12 -1.01 9.70 -39.59 -0.38 -1.40 16 13 C 0.50 10.45 7.18 -10.99 -0.08 10.37 16 14 O -0.54 -13.81 16.51 -14.30 -0.24 -14.05 16 15 N -0.71 -15.11 5.51 -61.47 -0.34 -15.45 16 16 C 0.25 6.70 5.43 -5.19 -0.03 6.68 16 17 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -26.15 13.29 55.43 0.74 -25.42 16 21 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H 0.07 0.85 7.92 -51.93 -0.41 0.44 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 28 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.05 0.50 7.87 -51.92 -0.41 0.09 16 30 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.39 6.96 8.10 -40.82 -0.33 6.63 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -33.60 346.19 -9.01 -42.61 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.14 Total: 2.93 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.70 Total: -5.37 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.40 Total: -40.87 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.76 Total: -20.30 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.60 -9.01 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451239103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.709 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds