Wall clock time and date at job start Thu Apr 9 2020 13:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47299 * 2 1 4 4 O 1.42903 * 109.46892 * 119.99938 * 2 1 3 5 5 C 1.35899 * 116.99691 * 154.99664 * 4 2 1 6 6 C 1.38743 * 120.05781 * 5.49512 * 5 4 2 7 7 C 1.38123 * 119.94503 * 179.97438 * 6 5 4 8 8 C 1.38286 * 120.05487 * 359.97438 * 7 6 5 9 9 C 1.38246 * 120.11308 * 0.02562 * 8 7 6 10 10 C 1.38165 * 120.05277 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.02581 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47163 * 145.00229 * 11 10 9 13 13 C 1.53005 * 109.46808 * 264.99232 * 11 10 9 14 14 N 1.46497 * 109.47672 * 24.99393 * 11 10 9 15 15 C 1.34769 * 120.00338 * 154.99785 * 14 11 10 16 16 O 1.21694 * 119.99944 * 0.02562 * 15 14 11 17 17 C 1.46371 * 120.00297 * 180.02562 * 15 14 11 18 18 H 1.08004 * 119.99939 * 0.02562 * 17 15 14 19 19 C 1.40052 * 120.00302 * 180.02562 * 17 15 14 20 20 N 1.30669 * 119.99731 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00140 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47099 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47164 * 119.99623 * 21 19 17 24 24 H 1.48498 * 109.46810 * 240.00016 * 21 19 17 25 25 H 1.09001 * 109.47233 * 300.00299 * 1 2 3 26 26 H 1.08999 * 109.46635 * 60.00009 * 1 2 3 27 27 H 1.08991 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47233 * 239.99701 * 2 1 3 29 29 H 1.09001 * 109.47223 * 59.99695 * 3 2 1 30 30 H 1.08995 * 109.47141 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47227 * 300.00101 * 3 2 1 32 32 H 1.08003 * 120.03318 * 359.94697 * 6 5 4 33 33 H 1.08006 * 119.97419 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.94534 * 180.02562 * 8 7 6 35 35 H 1.07998 * 119.97506 * 180.27509 * 9 8 7 36 36 H 1.08997 * 109.47029 * 179.97438 * 13 11 10 37 37 H 1.09000 * 109.47414 * 300.00371 * 13 11 10 38 38 H 1.09005 * 109.46882 * 60.00527 * 13 11 10 39 39 H 0.97002 * 119.99464 * 335.00755 * 14 11 10 40 40 H 0.96998 * 119.99930 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2466 -1.2248 1.0979 6 6 4.0353 -1.0229 -0.0256 7 6 5.2958 -1.5838 -0.0930 8 6 5.7720 -2.3456 0.9583 9 6 4.9881 -2.5482 2.0789 10 6 3.7262 -1.9902 2.1506 11 6 2.8724 -2.2111 3.3726 12 1 2.2823 -1.3162 3.5702 13 6 1.9357 -3.3969 3.1327 14 7 3.7322 -2.4933 4.5247 15 6 3.2940 -2.2334 5.7724 16 8 2.1838 -1.7647 5.9420 17 6 4.1532 -2.5148 6.9234 18 1 5.1387 -2.9304 6.7728 19 6 3.6976 -2.2452 8.2200 20 7 2.5056 -1.7419 8.4021 21 14 4.7946 -2.6037 9.6889 22 1 6.0856 -3.1657 9.2171 23 1 5.0457 -1.3463 10.4378 24 1 4.1242 -3.5849 10.5795 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 3.6640 -0.4281 -0.8470 33 1 5.9100 -1.4272 -0.9675 34 1 6.7580 -2.7829 0.9039 35 1 5.3639 -3.1399 2.9005 36 1 1.3184 -3.5569 4.0167 37 1 1.2959 -3.1870 2.2756 38 1 2.5258 -4.2919 2.9352 39 1 4.6170 -2.8671 4.3894 40 1 2.1899 -1.5555 9.3002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548449932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:22 Heat of formation + Delta-G solvation = -59.138479 kcal Electronic energy + Delta-G solvation = -21651.335811 eV Core-core repulsion = 18431.153032 eV Total energy + Delta-G solvation = -3220.182779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35541 -38.04226 -36.99416 -34.32123 -33.17523 -32.33293 -30.35063 -29.94398 -28.49609 -27.35531 -26.03973 -23.59325 -23.06469 -20.94584 -20.74942 -19.06059 -18.32465 -17.13815 -15.86089 -15.66293 -15.43828 -15.20641 -14.55543 -14.23370 -14.19366 -13.64108 -13.51153 -13.07854 -12.90652 -12.67559 -12.42823 -12.30389 -12.17291 -11.98701 -11.80068 -11.51369 -11.33513 -11.18149 -10.99581 -10.91913 -10.72414 -10.60508 -10.41543 -10.16809 -10.07725 -8.81943 -8.67399 -7.96106 -7.52551 -7.42808 -6.12678 -4.57995 1.48109 1.60254 3.16422 3.24386 3.27528 3.28870 3.91615 4.15169 4.64975 4.65922 4.78443 4.80889 4.91835 4.98571 5.05942 5.20799 5.34842 5.40850 5.55470 5.58759 5.63471 5.67003 5.82676 5.87636 5.94423 6.02208 6.05983 6.20660 6.23405 6.34207 6.47479 6.51236 6.65001 6.89424 6.92793 6.98795 7.48773 7.59966 8.00209 8.19211 8.39990 9.08361 9.61274 10.66707 10.86249 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.004564 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.652219 B = 6133.388468 C = 6888.086159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.077 3.923 3 C -0.181 4.181 4 O -0.301 6.301 5 C 0.136 3.864 6 C -0.212 4.212 7 C -0.093 4.093 8 C -0.156 4.156 9 C -0.077 4.077 10 C -0.104 4.104 11 C 0.198 3.802 12 H 0.089 0.911 13 C -0.147 4.147 14 N -0.762 5.762 15 C 0.556 3.444 16 O -0.578 6.578 17 C -0.546 4.546 18 H 0.067 0.933 19 C 0.088 3.912 20 N -0.768 5.768 21 Si 0.906 3.094 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.377 0.623 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.363 1.429 -18.383 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.238 4.238 4 O -0.214 6.214 5 C 0.090 3.910 6 C -0.231 4.231 7 C -0.111 4.111 8 C -0.174 4.174 9 C -0.096 4.096 10 C -0.105 4.105 11 C 0.091 3.909 12 H 0.107 0.893 13 C -0.206 4.206 14 N -0.419 5.419 15 C 0.360 3.640 16 O -0.461 6.461 17 C -0.583 4.583 18 H 0.085 0.915 19 C -0.131 4.131 20 N -0.397 5.397 21 Si 0.731 3.269 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.211 0.789 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.236 1.861 -17.953 18.091 hybrid contribution 1.149 -0.246 0.378 1.235 sum 2.385 1.615 -17.574 17.809 Atomic orbital electron populations 1.21850 0.92546 1.03254 1.02985 1.22401 0.95456 0.92566 0.87524 1.22392 1.02154 0.96195 1.03081 1.86223 1.29219 1.67872 1.38118 1.18755 0.84926 0.93220 0.94082 1.21180 0.96549 1.06628 0.98717 1.20834 0.94946 0.96911 0.98413 1.20997 1.00285 1.01720 0.94439 1.20866 0.92762 0.98227 0.97714 1.19684 0.96095 0.98830 0.95934 1.19182 0.90449 0.98590 0.82646 0.89323 1.22083 0.99317 0.97741 1.01449 1.46345 1.18399 1.71504 1.05627 1.18203 0.87049 0.77758 0.80970 1.90598 1.22092 1.48646 1.84754 1.20919 1.02032 1.45371 0.89954 0.91493 1.25693 0.94729 0.92940 0.99773 1.70036 1.16156 1.31378 1.22135 0.86348 0.80790 0.78499 0.81293 1.18809 1.20222 1.20212 0.91173 0.90816 0.91596 0.91187 0.91173 0.91869 0.91308 0.85650 0.86309 0.86128 0.85190 0.91642 0.93163 0.93553 0.78932 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.56 37.16 0.36 -1.11 16 2 C 0.08 0.87 2.85 -26.73 -0.08 0.79 16 3 C -0.18 -1.84 9.17 37.16 0.34 -1.50 16 4 O -0.30 -4.72 8.94 -19.42 -0.17 -4.90 16 5 C 0.14 2.15 6.57 -39.22 -0.26 1.89 16 6 C -0.21 -2.75 8.24 -39.44 -0.33 -3.08 16 7 C -0.09 -1.12 10.04 -39.61 -0.40 -1.51 16 8 C -0.16 -2.01 10.04 -39.56 -0.40 -2.40 16 9 C -0.08 -1.18 9.24 -39.61 -0.37 -1.55 16 10 C -0.10 -1.82 5.07 -104.47 -0.53 -2.35 16 11 C 0.20 4.15 2.51 -69.08 -0.17 3.97 16 12 H 0.09 2.16 7.12 -51.93 -0.37 1.79 16 13 C -0.15 -2.86 9.47 37.16 0.35 -2.51 16 14 N -0.76 -17.76 4.99 -56.35 -0.28 -18.05 16 15 C 0.56 16.19 7.71 -12.99 -0.10 16.09 16 16 O -0.58 -19.07 14.68 5.19 0.08 -19.00 16 17 C -0.55 -15.70 9.54 -35.63 -0.34 -16.04 16 18 H 0.07 1.77 7.85 -52.48 -0.41 1.35 16 19 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 20 N -0.77 -23.43 11.83 55.55 0.66 -22.77 16 21 Si 0.91 20.45 29.56 -169.99 -5.02 15.43 16 22 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.69 6.31 -51.93 -0.33 0.36 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.67 6.91 -51.93 -0.36 0.31 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.13 1.33 5.43 -52.48 -0.29 1.04 16 33 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 34 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 35 H 0.13 1.90 6.07 -52.49 -0.32 1.58 16 36 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.38 7.73 6.19 -40.82 -0.25 7.48 16 40 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 LS Contribution 332.25 15.07 5.01 5.01 Total: -1.00 -35.08 332.25 -7.44 -42.51 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.69 Total: 8.64 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.01 Total: -6.89 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.38 Total: -40.81 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.10 Total: -23.89 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.08 -7.44 -42.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548449932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.624 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds