Wall clock time and date at job start Thu Apr 9 2020 13:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47299 * 2 1 4 4 O 1.42903 * 109.46892 * 119.99938 * 2 1 3 5 5 C 1.35899 * 116.99691 * 154.99664 * 4 2 1 6 6 C 1.38743 * 120.05781 * 5.49512 * 5 4 2 7 7 C 1.38123 * 119.94503 * 179.97438 * 6 5 4 8 8 C 1.38286 * 120.05487 * 359.97438 * 7 6 5 9 9 C 1.38246 * 120.11308 * 0.02562 * 8 7 6 10 10 C 1.38165 * 120.05277 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.02581 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47163 * 145.00229 * 11 10 9 13 13 C 1.53005 * 109.46808 * 264.99232 * 11 10 9 14 14 N 1.46497 * 109.47672 * 24.99393 * 11 10 9 15 15 C 1.34769 * 120.00338 * 154.99785 * 14 11 10 16 16 O 1.21694 * 119.99944 * 0.02562 * 15 14 11 17 17 C 1.46371 * 120.00297 * 180.02562 * 15 14 11 18 18 H 1.08004 * 119.99939 * 0.02562 * 17 15 14 19 19 C 1.40052 * 120.00302 * 180.02562 * 17 15 14 20 20 N 1.30669 * 119.99731 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00140 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47099 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47164 * 119.99623 * 21 19 17 24 24 H 1.48498 * 109.46810 * 240.00016 * 21 19 17 25 25 H 1.09001 * 109.47233 * 300.00299 * 1 2 3 26 26 H 1.08999 * 109.46635 * 60.00009 * 1 2 3 27 27 H 1.08991 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47233 * 239.99701 * 2 1 3 29 29 H 1.09001 * 109.47223 * 59.99695 * 3 2 1 30 30 H 1.08995 * 109.47141 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47227 * 300.00101 * 3 2 1 32 32 H 1.08003 * 120.03318 * 359.94697 * 6 5 4 33 33 H 1.08006 * 119.97419 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.94534 * 180.02562 * 8 7 6 35 35 H 1.07998 * 119.97506 * 180.27509 * 9 8 7 36 36 H 1.08997 * 109.47029 * 179.97438 * 13 11 10 37 37 H 1.09000 * 109.47414 * 300.00371 * 13 11 10 38 38 H 1.09005 * 109.46882 * 60.00527 * 13 11 10 39 39 H 0.97002 * 119.99464 * 335.00755 * 14 11 10 40 40 H 0.96998 * 119.99930 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2466 -1.2248 1.0979 6 6 4.0353 -1.0229 -0.0256 7 6 5.2958 -1.5838 -0.0930 8 6 5.7720 -2.3456 0.9583 9 6 4.9881 -2.5482 2.0789 10 6 3.7262 -1.9902 2.1506 11 6 2.8724 -2.2111 3.3726 12 1 2.2823 -1.3162 3.5702 13 6 1.9357 -3.3969 3.1327 14 7 3.7322 -2.4933 4.5247 15 6 3.2940 -2.2334 5.7724 16 8 2.1838 -1.7647 5.9420 17 6 4.1532 -2.5148 6.9234 18 1 5.1387 -2.9304 6.7728 19 6 3.6976 -2.2452 8.2200 20 7 2.5056 -1.7419 8.4021 21 14 4.7946 -2.6037 9.6889 22 1 6.0856 -3.1657 9.2171 23 1 5.0457 -1.3463 10.4378 24 1 4.1242 -3.5849 10.5795 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 3.6640 -0.4281 -0.8470 33 1 5.9100 -1.4272 -0.9675 34 1 6.7580 -2.7829 0.9039 35 1 5.3639 -3.1399 2.9005 36 1 1.3184 -3.5569 4.0167 37 1 1.2959 -3.1870 2.2756 38 1 2.5258 -4.2919 2.9352 39 1 4.6170 -2.8671 4.3894 40 1 2.1899 -1.5555 9.3002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548449932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:21 Heat of formation + Delta-G solvation = -82.917591 kcal Electronic energy + Delta-G solvation = -21652.366951 eV Core-core repulsion = 18431.153032 eV Total energy + Delta-G solvation = -3221.213918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48519 -39.65619 -38.52857 -36.07724 -34.55893 -34.12129 -32.04141 -31.10971 -29.87154 -28.22878 -28.13534 -24.88090 -24.30013 -22.39635 -21.91902 -20.83638 -19.75581 -18.75222 -17.55553 -17.08325 -16.78020 -16.44018 -15.89569 -15.69688 -15.54456 -15.14679 -14.88322 -14.59232 -14.35924 -14.06301 -13.77178 -13.43909 -13.29974 -13.22808 -13.12993 -12.92698 -12.77447 -12.76085 -12.60653 -12.56310 -12.07805 -11.96391 -11.94819 -11.65096 -11.40993 -10.94748 -9.88433 -9.77810 -9.50655 -9.03535 -8.28265 -6.85477 0.37930 0.52422 1.39860 1.40580 1.58552 2.24970 2.30556 2.48558 2.82069 3.09814 3.62654 3.72788 3.83709 3.91403 3.99031 4.12732 4.20334 4.27130 4.42323 4.50071 4.54452 4.65725 4.67043 4.76464 4.80036 4.84916 4.93902 4.95976 5.06507 5.20248 5.24283 5.26292 5.32169 5.43273 5.51484 5.61161 5.88867 5.92987 6.24181 6.31025 6.57137 6.87023 7.56077 8.51105 8.68946 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.004564 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.652219 B = 6133.388468 C = 6888.086159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.067 3.933 3 C -0.177 4.177 4 O -0.333 6.333 5 C 0.122 3.878 6 C -0.208 4.208 7 C -0.080 4.080 8 C -0.153 4.153 9 C -0.088 4.088 10 C -0.137 4.137 11 C 0.203 3.797 12 H 0.041 0.959 13 C -0.135 4.135 14 N -0.749 5.749 15 C 0.539 3.461 16 O -0.631 6.631 17 C -0.573 4.573 18 H 0.088 0.912 19 C 0.028 3.972 20 N -0.823 5.823 21 Si 1.000 3.000 22 H -0.245 1.245 23 H -0.269 1.269 24 H -0.268 1.268 25 H 0.051 0.949 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.152 0.848 35 H 0.129 0.871 36 H 0.027 0.973 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.392 0.608 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 1.042 -20.486 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 C -0.234 4.234 4 O -0.248 6.248 5 C 0.076 3.924 6 C -0.226 4.226 7 C -0.098 4.098 8 C -0.171 4.171 9 C -0.106 4.106 10 C -0.139 4.139 11 C 0.097 3.903 12 H 0.059 0.941 13 C -0.194 4.194 14 N -0.405 5.405 15 C 0.343 3.657 16 O -0.518 6.518 17 C -0.610 4.610 18 H 0.106 0.894 19 C -0.187 4.187 20 N -0.453 5.453 21 Si 0.819 3.181 22 H -0.168 1.168 23 H -0.194 1.194 24 H -0.193 1.193 25 H 0.070 0.930 26 H 0.125 0.875 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.170 0.830 33 H 0.177 0.823 34 H 0.169 0.831 35 H 0.147 0.853 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.228 0.772 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.040 1.457 -20.119 20.572 hybrid contribution 0.269 -0.082 0.880 0.924 sum 4.309 1.375 -19.238 19.763 Atomic orbital electron populations 1.21899 0.91845 1.03110 1.03667 1.22758 0.96129 0.93033 0.86942 1.22376 1.01865 0.95549 1.03616 1.86208 1.29584 1.68396 1.40622 1.18935 0.85501 0.93253 0.94662 1.21497 0.96597 1.06362 0.98172 1.21346 0.94558 0.94777 0.99141 1.21343 1.01079 1.01271 0.93408 1.20960 0.92232 0.98438 0.98990 1.19434 0.97030 1.02237 0.95170 1.19034 0.90674 0.96953 0.83591 0.94129 1.21941 0.99031 0.98102 1.00289 1.46025 1.19194 1.70322 1.04945 1.18644 0.86628 0.77482 0.82960 1.90549 1.24211 1.51034 1.86000 1.21461 1.02933 1.45919 0.90690 0.89397 1.27007 0.96332 0.91801 1.03559 1.70212 1.18888 1.32607 1.23579 0.84945 0.78637 0.78639 0.75871 1.16824 1.19377 1.19272 0.93030 0.87531 0.92171 0.89045 0.93234 0.92213 0.88146 0.82974 0.82295 0.83055 0.85326 0.95411 0.91413 0.91659 0.77185 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.56 71.98 0.69 -2.15 16 2 C 0.07 1.45 2.85 30.60 0.09 1.53 16 3 C -0.18 -3.37 9.17 71.98 0.66 -2.71 16 4 O -0.33 -10.79 8.94 -92.41 -0.83 -11.61 16 5 C 0.12 3.83 6.57 22.50 0.15 3.98 16 6 C -0.21 -4.79 8.24 22.36 0.18 -4.61 16 7 C -0.08 -1.59 10.04 22.25 0.22 -1.36 16 8 C -0.15 -3.41 10.04 22.28 0.22 -3.19 16 9 C -0.09 -2.60 9.24 22.25 0.21 -2.39 16 10 C -0.14 -4.88 5.07 -19.77 -0.10 -4.98 16 11 C 0.20 9.08 2.51 44.25 0.11 9.19 16 12 H 0.04 2.18 7.12 -2.39 -0.02 2.16 16 13 C -0.14 -5.56 9.47 71.98 0.68 -4.88 16 14 N -0.75 -36.63 4.99 -450.41 -2.25 -38.88 16 15 C 0.54 33.04 7.71 86.36 0.67 33.71 16 16 O -0.63 -44.59 14.68 -4.33 -0.06 -44.65 16 17 C -0.57 -33.77 9.54 24.83 0.24 -33.54 16 18 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 19 C 0.03 1.60 5.50 85.31 0.47 2.07 16 20 N -0.82 -52.16 11.83 21.84 0.26 -51.91 16 21 Si 1.00 42.09 29.56 68.60 2.03 44.12 16 22 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.56 6.31 -2.39 -0.02 1.55 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.17 6.91 -2.39 -0.02 1.15 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.15 2.61 5.43 -2.91 -0.02 2.60 16 33 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.13 3.67 6.07 -2.91 -0.02 3.66 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.39 16.50 6.19 -92.71 -0.57 15.93 16 40 H 0.27 15.64 8.29 -92.71 -0.77 14.87 16 Total: -1.00 -82.56 332.25 4.11 -78.46 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.47 Total: 33.81 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 4.49 Total: -9.34 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -1.99 Total: -90.79 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -0.89 Total: -56.26 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -82.56 4.11 -78.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548449932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.460 kcal (2) G-P(sol) polarization free energy of solvation -82.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds