Wall clock time and date at job start Thu Apr 9 2020 13:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46892 * 2 1 4 4 C 1.52993 * 109.47303 * 120.00593 * 2 1 3 5 5 C 1.50702 * 109.47080 * 294.99611 * 4 2 1 6 6 C 1.38253 * 119.92981 * 269.98243 * 5 4 2 7 7 C 1.38234 * 120.14562 * 179.79186 * 6 5 4 8 8 C 1.38552 * 120.02643 * 0.43012 * 7 6 5 9 9 C 1.39260 * 119.82772 * 359.56460 * 8 7 6 10 10 C 1.38230 * 119.92839 * 90.00010 * 5 4 2 11 11 O 1.36502 * 108.64315 * 180.24727 * 9 8 7 12 12 C 1.43984 * 105.48223 * 342.72741 * 11 9 8 13 13 O 1.36504 * 131.52998 * 179.88522 * 8 7 6 14 14 C 1.53006 * 109.46568 * 240.00494 * 2 1 3 15 15 N 1.46496 * 109.47494 * 65.00087 * 14 2 1 16 16 C 1.46507 * 119.99858 * 269.99920 * 15 14 2 17 17 C 1.36932 * 120.00324 * 89.99488 * 15 14 2 18 18 H 1.07999 * 119.99895 * 21.71242 * 17 15 14 19 19 C 1.38817 * 120.00324 * 201.71148 * 17 15 14 20 20 N 1.31614 * 119.99598 * 11.51491 * 19 17 15 21 21 Si 1.86797 * 120.00187 * 191.51811 * 19 17 15 22 22 H 1.48502 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47400 * 119.99788 * 21 19 17 24 24 H 1.48498 * 109.47039 * 239.99982 * 21 19 17 25 25 H 1.09000 * 109.46772 * 299.99346 * 1 2 3 26 26 H 1.09001 * 109.47337 * 59.99590 * 1 2 3 27 27 H 1.08996 * 109.46892 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46924 * 175.00016 * 4 2 1 29 29 H 1.08996 * 109.47448 * 54.99637 * 4 2 1 30 30 H 1.08005 * 119.92648 * 0.04369 * 6 5 4 31 31 H 1.07997 * 119.98976 * 180.32918 * 7 6 5 32 32 H 1.08002 * 119.98943 * 359.97438 * 10 5 4 33 33 H 1.09001 * 110.57256 * 268.54159 * 12 11 9 34 34 H 1.09006 * 110.56847 * 145.67289 * 12 11 9 35 35 H 1.09001 * 109.46853 * 184.99834 * 14 2 1 36 36 H 1.09002 * 109.47045 * 304.99531 * 14 2 1 37 37 H 1.08999 * 109.47129 * 95.26523 * 16 15 14 38 38 H 1.08997 * 109.47108 * 215.27093 * 16 15 14 39 39 H 1.09003 * 109.46955 * 335.26757 * 16 15 14 40 40 H 0.97005 * 120.00199 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6415 0.0569 2.4765 6 6 2.4830 1.0323 2.9783 7 6 2.1199 1.7518 4.1014 8 6 0.9145 1.4904 4.7325 9 6 0.0668 0.5080 4.2270 10 6 0.4354 -0.2063 3.0985 11 8 -1.0471 0.4459 5.0137 12 6 -0.6902 1.1132 6.2386 13 8 0.3318 2.0441 5.8358 14 6 2.0399 -0.7212 -1.2494 15 7 1.6524 0.0355 -2.4424 16 6 0.3744 -0.2422 -3.1028 17 6 2.4845 1.0023 -2.9404 18 1 3.5377 0.9833 -2.7020 19 6 1.9744 2.0067 -3.7515 20 7 0.6726 2.1672 -3.8601 21 14 3.1355 3.1303 -4.6888 22 1 4.5398 2.7449 -4.3977 23 1 2.8788 3.0031 -6.1459 24 1 2.9112 4.5365 -4.2675 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1264 -0.7995 1.2054 29 1 1.6055 -1.7198 1.2950 30 1 3.4244 1.2354 2.4893 31 1 2.7768 2.5169 4.4880 32 1 -0.2201 -0.9688 2.7044 33 1 -0.2953 0.4002 6.9623 34 1 -1.5494 1.6426 6.6507 35 1 3.1263 -0.7994 -1.2058 36 1 1.6053 -1.7198 -1.2953 37 1 -0.3813 0.4540 -2.7391 38 1 0.4890 -0.1239 -4.1803 39 1 0.0647 -1.2633 -2.8803 40 1 0.3160 2.8689 -4.4272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208221678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:55 Heat of formation + Delta-G solvation = -20.954106 kcal Electronic energy + Delta-G solvation = -21486.835275 eV Core-core repulsion = 18268.308295 eV Total energy + Delta-G solvation = -3218.526980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16199 -38.56971 -36.40023 -36.28466 -33.86815 -31.20485 -30.41397 -29.62490 -26.87704 -26.28569 -25.41441 -25.12272 -22.92772 -22.21787 -20.93382 -19.34176 -17.93386 -17.48942 -17.28863 -16.58484 -16.21885 -14.99465 -14.60693 -14.48161 -14.07798 -13.85531 -13.81793 -13.73028 -13.28987 -13.01650 -12.77342 -12.59372 -12.07469 -11.88282 -11.65719 -11.21006 -11.13026 -10.87297 -10.82361 -10.63268 -10.53864 -10.30709 -10.02952 -9.93660 -9.76508 -9.62173 -8.75027 -8.48286 -7.96127 -6.67416 -5.66315 -3.10533 1.19104 1.27257 2.72060 3.38320 3.40777 3.47958 3.49724 3.62244 4.50777 4.52140 4.55184 4.72444 4.98822 5.07795 5.15074 5.30278 5.45545 5.49044 5.56268 5.61453 5.86889 5.97764 6.07094 6.09444 6.10949 6.23619 6.31994 6.39837 6.44941 6.54225 6.65408 6.76152 6.83639 6.86211 7.12382 7.15255 7.22287 7.45666 7.81726 7.89049 8.46351 9.30742 9.94904 10.43656 11.38686 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025347 B = 0.003898 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.386241 B = 7181.527213 C = 7487.055074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.073 0.927 4 C -0.075 4.075 5 C -0.051 4.051 6 C -0.108 4.108 7 C -0.097 4.097 8 C 0.014 3.986 9 C 0.030 3.970 10 C -0.096 4.096 11 O -0.311 6.311 12 C 0.214 3.786 13 O -0.313 6.313 14 C 0.158 3.842 15 N -0.601 5.601 16 C 0.164 3.836 17 C -0.250 4.250 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.909 5.909 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.042 0.958 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.040 0.960 39 H -0.005 1.005 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 -5.182 17.935 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.091 0.909 4 C -0.113 4.113 5 C -0.052 4.052 6 C -0.126 4.126 7 C -0.115 4.115 8 C -0.030 4.030 9 C -0.014 4.014 10 C -0.114 4.114 11 O -0.228 6.228 12 C 0.102 3.898 13 O -0.230 6.230 14 C 0.030 3.970 15 N -0.323 5.323 16 C 0.020 3.980 17 C -0.379 4.379 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.555 5.555 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.013 0.987 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.324 -4.967 17.883 18.563 hybrid contribution 0.241 0.914 -0.180 0.963 sum -0.082 -4.053 17.703 18.161 Atomic orbital electron populations 1.21886 0.95838 1.00225 1.02057 1.21895 0.96217 1.01012 0.93589 0.90866 1.20761 1.01177 0.98043 0.91357 1.19796 0.92848 0.96604 0.95940 1.20887 1.00721 0.95880 0.95127 1.20044 0.92955 1.01799 0.96721 1.19753 0.95945 0.95991 0.91317 1.19772 0.86090 0.98909 0.96666 1.19992 0.97183 1.00500 0.93758 1.87350 1.32588 1.75816 1.27011 1.25546 0.90243 0.87041 0.86996 1.87331 1.48885 1.43816 1.42920 1.20879 0.97266 0.93156 0.85694 1.43956 1.20378 1.41472 1.26511 1.20849 0.87305 0.92980 0.96870 1.19263 0.90042 1.02750 1.25887 0.91383 1.24990 0.95647 0.97475 1.01662 1.70071 1.10059 1.33829 1.41515 0.86218 0.80260 0.80597 0.79689 1.20393 1.21751 1.21845 0.94267 0.90733 0.94312 0.90841 0.91249 0.84364 0.85016 0.84858 0.90259 0.85525 0.93987 0.94600 0.94976 0.94110 0.98667 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.33 37.16 0.31 -2.29 16 2 C -0.11 -1.89 2.58 -90.62 -0.23 -2.12 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.08 -1.04 4.84 -27.89 -0.13 -1.17 16 5 C -0.05 -0.71 4.71 -104.62 -0.49 -1.20 16 6 C -0.11 -1.40 9.69 -39.58 -0.38 -1.78 16 7 C -0.10 -1.24 10.06 -39.47 -0.40 -1.64 16 8 C 0.01 0.19 7.15 -39.09 -0.28 -0.09 16 9 C 0.03 0.43 7.15 -39.09 -0.28 0.15 16 10 C -0.10 -1.33 7.97 -39.47 -0.31 -1.65 16 11 O -0.31 -4.18 11.40 -45.69 -0.52 -4.70 16 12 C 0.21 2.11 8.89 101.05 0.90 3.01 16 13 O -0.31 -4.09 11.40 -45.70 -0.52 -4.61 16 14 C 0.16 3.13 5.18 -4.04 -0.02 3.11 16 15 N -0.60 -14.91 2.75 -181.11 -0.50 -15.41 16 16 C 0.16 4.05 7.86 59.85 0.47 4.52 16 17 C -0.25 -6.81 9.68 -15.06 -0.15 -6.96 16 18 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 19 C 0.00 0.00 5.14 -17.43 -0.09 -0.09 16 20 N -0.91 -26.54 10.55 55.49 0.59 -25.95 16 21 Si 0.90 21.94 29.57 -169.99 -5.03 16.91 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H 0.04 0.68 6.26 -51.93 -0.33 0.35 16 26 H 0.07 1.63 5.55 -51.93 -0.29 1.34 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.13 1.72 8.04 -52.49 -0.42 1.30 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 36 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 37 H 0.03 0.85 5.89 -51.93 -0.31 0.54 16 38 H 0.04 1.09 7.22 -51.93 -0.37 0.71 16 39 H -0.01 -0.11 7.83 -51.93 -0.41 -0.52 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -31.15 323.91 -8.07 -39.22 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.87 Total: -2.14 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.09 Total: -8.20 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.09 Total: -41.36 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.04 Total: -9.31 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.15 -8.07 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208221678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.265 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds