Wall clock time and date at job start Thu Apr 9 2020 13:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46892 * 2 1 4 4 C 1.52993 * 109.47303 * 120.00593 * 2 1 3 5 5 C 1.50702 * 109.47080 * 294.99611 * 4 2 1 6 6 C 1.38253 * 119.92981 * 269.98243 * 5 4 2 7 7 C 1.38234 * 120.14562 * 179.79186 * 6 5 4 8 8 C 1.38552 * 120.02643 * 0.43012 * 7 6 5 9 9 C 1.39260 * 119.82772 * 359.56460 * 8 7 6 10 10 C 1.38230 * 119.92839 * 90.00010 * 5 4 2 11 11 O 1.36502 * 108.64315 * 180.24727 * 9 8 7 12 12 C 1.43984 * 105.48223 * 342.72741 * 11 9 8 13 13 O 1.36504 * 131.52998 * 179.88522 * 8 7 6 14 14 C 1.53006 * 109.46568 * 240.00494 * 2 1 3 15 15 N 1.46496 * 109.47494 * 65.00087 * 14 2 1 16 16 C 1.46507 * 119.99858 * 269.99920 * 15 14 2 17 17 C 1.36932 * 120.00324 * 89.99488 * 15 14 2 18 18 H 1.07999 * 119.99895 * 21.71242 * 17 15 14 19 19 C 1.38817 * 120.00324 * 201.71148 * 17 15 14 20 20 N 1.31614 * 119.99598 * 11.51491 * 19 17 15 21 21 Si 1.86797 * 120.00187 * 191.51811 * 19 17 15 22 22 H 1.48502 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47400 * 119.99788 * 21 19 17 24 24 H 1.48498 * 109.47039 * 239.99982 * 21 19 17 25 25 H 1.09000 * 109.46772 * 299.99346 * 1 2 3 26 26 H 1.09001 * 109.47337 * 59.99590 * 1 2 3 27 27 H 1.08996 * 109.46892 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46924 * 175.00016 * 4 2 1 29 29 H 1.08996 * 109.47448 * 54.99637 * 4 2 1 30 30 H 1.08005 * 119.92648 * 0.04369 * 6 5 4 31 31 H 1.07997 * 119.98976 * 180.32918 * 7 6 5 32 32 H 1.08002 * 119.98943 * 359.97438 * 10 5 4 33 33 H 1.09001 * 110.57256 * 268.54159 * 12 11 9 34 34 H 1.09006 * 110.56847 * 145.67289 * 12 11 9 35 35 H 1.09001 * 109.46853 * 184.99834 * 14 2 1 36 36 H 1.09002 * 109.47045 * 304.99531 * 14 2 1 37 37 H 1.08999 * 109.47129 * 95.26523 * 16 15 14 38 38 H 1.08997 * 109.47108 * 215.27093 * 16 15 14 39 39 H 1.09003 * 109.46955 * 335.26757 * 16 15 14 40 40 H 0.97005 * 120.00199 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6415 0.0569 2.4765 6 6 2.4830 1.0323 2.9783 7 6 2.1199 1.7518 4.1014 8 6 0.9145 1.4904 4.7325 9 6 0.0668 0.5080 4.2270 10 6 0.4354 -0.2063 3.0985 11 8 -1.0471 0.4459 5.0137 12 6 -0.6902 1.1132 6.2386 13 8 0.3318 2.0441 5.8358 14 6 2.0399 -0.7212 -1.2494 15 7 1.6524 0.0355 -2.4424 16 6 0.3744 -0.2422 -3.1028 17 6 2.4845 1.0023 -2.9404 18 1 3.5377 0.9833 -2.7020 19 6 1.9744 2.0067 -3.7515 20 7 0.6726 2.1672 -3.8601 21 14 3.1355 3.1303 -4.6888 22 1 4.5398 2.7449 -4.3977 23 1 2.8788 3.0031 -6.1459 24 1 2.9112 4.5365 -4.2675 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1264 -0.7995 1.2054 29 1 1.6055 -1.7198 1.2950 30 1 3.4244 1.2354 2.4893 31 1 2.7768 2.5169 4.4880 32 1 -0.2201 -0.9688 2.7044 33 1 -0.2953 0.4002 6.9623 34 1 -1.5494 1.6426 6.6507 35 1 3.1263 -0.7994 -1.2058 36 1 1.6053 -1.7198 -1.2953 37 1 -0.3813 0.4540 -2.7391 38 1 0.4890 -0.1239 -4.1803 39 1 0.0647 -1.2633 -2.8803 40 1 0.3160 2.8689 -4.4272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208221678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:52:54 Heat of formation + Delta-G solvation = -38.463990 kcal Electronic energy + Delta-G solvation = -21487.594560 eV Core-core repulsion = 18268.308295 eV Total energy + Delta-G solvation = -3219.286265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.10099 -39.67828 -37.97658 -37.26543 -35.46975 -32.95381 -31.46246 -30.97592 -28.46025 -27.54422 -27.23464 -26.22840 -23.95793 -23.59110 -22.47556 -20.79966 -18.88491 -18.64024 -18.39933 -18.25364 -17.21101 -16.71570 -16.06016 -15.64846 -15.42663 -15.37955 -15.10638 -14.82876 -14.59131 -14.27391 -13.98403 -13.91922 -13.48349 -13.26911 -12.96188 -12.90238 -12.72450 -12.63761 -12.29028 -12.08374 -12.00784 -11.91865 -11.81602 -11.55443 -11.31081 -11.24757 -10.56928 -9.77351 -8.99540 -8.66588 -7.76274 -5.21932 0.16120 0.26045 1.47620 1.49087 1.58856 1.81664 2.54079 2.55558 2.59829 3.37765 3.52086 3.78406 3.82057 3.91936 4.06488 4.09219 4.26757 4.31143 4.33804 4.48608 4.51796 4.57324 4.82372 4.89378 4.92354 4.98012 5.05410 5.09569 5.16345 5.22905 5.25335 5.35444 5.41852 5.47332 5.54425 5.67115 5.68913 5.77288 5.88910 6.16250 6.40323 7.22725 7.97204 8.39883 9.27278 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025347 B = 0.003898 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.386241 B = 7181.527213 C = 7487.055074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.039 0.961 4 C -0.063 4.063 5 C -0.062 4.062 6 C -0.110 4.110 7 C -0.102 4.102 8 C 0.002 3.998 9 C 0.013 3.987 10 C -0.103 4.103 11 O -0.328 6.328 12 C 0.205 3.795 13 O -0.327 6.327 14 C 0.153 3.847 15 N -0.617 5.617 16 C 0.180 3.820 17 C -0.253 4.253 18 H 0.073 0.927 19 C -0.056 4.056 20 N -0.941 5.941 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.294 1.294 24 H -0.296 1.296 25 H 0.042 0.958 26 H 0.032 0.968 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.158 0.842 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.026 0.974 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 -6.086 19.461 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 H 0.057 0.943 4 C -0.101 4.101 5 C -0.062 4.062 6 C -0.128 4.128 7 C -0.120 4.120 8 C -0.042 4.042 9 C -0.031 4.031 10 C -0.122 4.122 11 O -0.245 6.245 12 C 0.094 3.906 13 O -0.244 6.244 14 C 0.027 3.973 15 N -0.340 5.340 16 C 0.035 3.965 17 C -0.384 4.384 18 H 0.091 0.909 19 C -0.251 4.251 20 N -0.589 5.589 21 Si 0.792 3.208 22 H -0.188 1.188 23 H -0.221 1.221 24 H -0.224 1.224 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.158 0.842 33 H 0.123 0.877 34 H 0.175 0.825 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.028 0.972 39 H 0.045 0.955 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.789 -5.899 19.449 20.339 hybrid contribution -0.125 1.150 -0.534 1.274 sum 0.664 -4.749 18.914 19.513 Atomic orbital electron populations 1.21772 0.96234 1.00962 1.00145 1.21612 0.95680 0.99281 0.94927 0.94279 1.20616 1.02218 0.98222 0.89004 1.19832 0.93103 0.97094 0.96179 1.21145 1.01247 0.95382 0.95055 1.20329 0.93014 1.02102 0.96571 1.20024 0.96357 0.96062 0.91743 1.19976 0.86605 0.99360 0.97144 1.20142 0.97428 1.00784 0.93826 1.87313 1.32670 1.76338 1.28167 1.26085 0.90939 0.87474 0.86106 1.87299 1.49553 1.44859 1.42657 1.21094 0.98028 0.93581 0.84614 1.44186 1.19935 1.41371 1.28475 1.20569 0.87038 0.94016 0.94858 1.19610 0.90683 1.02780 1.25280 0.90904 1.25716 0.96947 0.99298 1.03119 1.70247 1.11659 1.34507 1.42461 0.85250 0.79205 0.78366 0.77961 1.18822 1.22144 1.22387 0.93885 0.94843 0.92178 0.89142 0.89298 0.82822 0.83110 0.84189 0.87728 0.82487 0.93068 0.92408 0.97435 0.97172 0.95529 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 8.33 71.98 0.60 -4.19 16 2 C -0.09 -3.22 2.58 -10.79 -0.03 -3.25 16 3 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.06 -1.56 4.84 29.85 0.14 -1.41 16 5 C -0.06 -1.58 4.71 -19.86 -0.09 -1.67 16 6 C -0.11 -2.66 9.69 22.27 0.22 -2.44 16 7 C -0.10 -2.46 10.06 22.34 0.22 -2.24 16 8 C 0.00 0.06 7.15 22.59 0.16 0.22 16 9 C 0.01 0.37 7.15 22.59 0.16 0.53 16 10 C -0.10 -2.73 7.97 22.34 0.18 -2.55 16 11 O -0.33 -8.41 11.40 -76.07 -0.87 -9.28 16 12 C 0.20 3.65 8.89 113.37 1.01 4.65 16 13 O -0.33 -8.09 11.40 -76.10 -0.87 -8.96 16 14 C 0.15 5.77 5.18 86.38 0.45 6.22 16 15 N -0.62 -30.41 2.75 -726.92 -2.00 -32.41 16 16 C 0.18 8.96 7.86 127.77 1.00 9.97 16 17 C -0.25 -13.78 9.68 84.04 0.81 -12.97 16 18 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 19 C -0.06 -3.18 5.14 84.86 0.44 -2.75 16 20 N -0.94 -56.46 10.55 21.65 0.23 -56.23 16 21 Si 0.96 45.51 29.57 68.60 2.03 47.53 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 25 H 0.04 1.47 6.26 -2.39 -0.01 1.46 16 26 H 0.03 1.47 5.55 -2.39 -0.01 1.45 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.09 1.96 8.08 -2.38 -0.02 1.94 16 29 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 30 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.14 3.39 8.04 -2.91 -0.02 3.37 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.16 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.05 1.84 8.03 -2.39 -0.02 1.82 16 36 H 0.06 1.94 7.86 -2.39 -0.02 1.92 16 37 H 0.01 0.41 5.89 -2.39 -0.01 0.40 16 38 H 0.01 0.53 7.22 -2.39 -0.02 0.51 16 39 H 0.03 1.12 7.83 -2.39 -0.02 1.10 16 40 H 0.24 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -68.10 323.91 4.82 -63.28 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.02 Total: 7.94 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 5.27 Total: -11.88 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -1.77 Total: -88.64 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -1.74 Total: -18.24 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -68.10 4.82 -63.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208221678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.819 kcal (2) G-P(sol) polarization free energy of solvation -68.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds