Wall clock time and date at job start Thu Apr 9 2020 13:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 N 1.46900 * 109.47027 * 2 1 4 4 C 1.47960 * 111.00129 * 170.00020 * 3 2 1 5 5 C 1.53935 * 86.18604 * 222.41916 * 4 3 2 6 6 O 1.42902 * 113.73679 * 138.07570 * 5 4 3 7 7 C 1.35738 * 116.99668 * 151.90705 * 6 5 4 8 8 C 1.41192 * 120.28916 * 90.00270 * 7 6 5 9 9 C 1.41178 * 120.26255 * 359.74127 * 8 7 6 10 10 H 1.07998 * 119.99933 * 25.01969 * 9 8 7 11 11 C 1.39927 * 119.99884 * 205.01573 * 9 8 7 12 12 N 1.30874 * 119.99812 * 17.45559 * 11 9 8 13 13 Si 1.86794 * 119.99944 * 197.45470 * 11 9 8 14 14 H 1.48505 * 109.47299 * 59.99887 * 13 11 9 15 15 H 1.48498 * 109.47357 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47416 * 300.00151 * 13 11 9 17 17 C 1.40779 * 119.47193 * 179.72080 * 8 7 6 18 18 C 1.36488 * 120.02173 * 359.97438 * 17 8 7 19 19 C 1.38777 * 120.58274 * 359.97438 * 18 17 8 20 20 C 1.38711 * 120.53341 * 0.04368 * 19 18 17 21 21 O 1.36016 * 120.01753 * 179.97438 * 20 19 18 22 22 C 1.42902 * 116.99996 * 359.94403 * 21 20 19 23 23 C 1.48197 * 111.06952 * 70.57068 * 3 2 1 24 24 H 1.09005 * 109.47449 * 299.99603 * 1 2 3 25 25 H 1.09005 * 109.47789 * 59.99640 * 1 2 3 26 26 H 1.09000 * 109.47274 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47449 * 240.00397 * 2 1 3 28 28 H 1.08997 * 109.47273 * 120.00026 * 2 1 3 29 29 H 1.08998 * 113.75865 * 108.10174 * 4 3 2 30 30 H 1.09006 * 113.76170 * 336.73490 * 4 3 2 31 31 H 1.09000 * 113.73708 * 269.26253 * 5 4 3 32 32 H 0.96998 * 119.99655 * 180.02562 * 12 11 9 33 33 H 1.08001 * 119.98372 * 179.97438 * 17 8 7 34 34 H 1.07995 * 119.70868 * 180.02562 * 18 17 8 35 35 H 1.07993 * 119.73379 * 180.02562 * 19 18 17 36 36 H 1.09009 * 109.46587 * 299.99468 * 22 21 20 37 37 H 1.08995 * 109.47412 * 59.99247 * 22 21 20 38 38 H 1.08997 * 109.46751 * 179.97438 * 22 21 20 39 39 H 1.08999 * 113.75880 * 23.23695 * 23 3 2 40 40 H 1.08997 * 113.82064 * 251.80766 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 3.4788 1.4315 0.2399 5 6 3.1837 2.6197 1.1730 6 8 3.9302 2.5935 2.3913 7 6 4.1998 3.7891 2.9745 8 6 3.3030 4.3411 3.9151 9 6 2.1155 3.6563 4.2527 10 1 2.0594 2.5839 4.1381 11 6 1.0113 4.3670 4.7359 12 7 0.9391 5.6620 4.5608 13 14 -0.3596 3.4675 5.6307 14 1 0.1918 2.7984 6.8363 15 1 -1.4052 4.4396 6.0394 16 1 -0.9551 2.4494 4.7284 17 6 3.6027 5.5794 4.5139 18 6 4.7526 6.2367 4.1845 19 6 5.6357 5.6952 3.2611 20 6 5.3638 4.4768 2.6565 21 8 6.2364 3.9560 1.7524 22 6 7.4123 4.7182 1.4722 23 6 1.7634 2.0406 1.3041 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8899 29 1 4.0605 1.6997 -0.6421 30 1 3.8673 0.5536 0.7562 31 1 3.2182 3.5883 0.6744 32 1 0.1738 6.1547 4.8961 33 1 2.9224 6.0094 5.2341 34 1 4.9777 7.1862 4.6473 35 1 6.5418 6.2269 3.0109 36 1 7.1275 5.6931 1.0764 37 1 7.9857 4.8519 2.3894 38 1 8.0205 4.1908 0.7374 39 1 1.6490 1.3412 2.1323 40 1 0.9770 2.7946 1.2709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225842818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:02 Heat of formation + Delta-G solvation = -21.595006 kcal Electronic energy + Delta-G solvation = -22184.454519 eV Core-core repulsion = 18965.899748 eV Total energy + Delta-G solvation = -3218.554771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.65317 -38.76160 -36.75020 -35.40895 -33.50342 -31.98691 -29.46948 -28.56684 -26.50481 -26.31421 -25.42770 -24.98094 -21.73152 -20.85410 -20.58067 -19.32359 -17.89817 -16.83254 -15.86405 -15.69733 -15.50015 -14.97923 -14.82519 -14.78988 -14.25003 -13.66046 -13.37099 -13.10822 -12.91364 -12.65621 -12.17298 -12.01963 -11.91061 -11.67078 -11.42862 -11.31377 -11.12784 -11.03961 -10.77738 -10.71562 -10.53115 -10.21340 -10.04173 -9.95087 -9.55500 -9.20794 -8.63197 -8.49197 -7.47070 -6.97006 -6.79907 -4.46410 2.61619 2.87021 3.00981 3.03633 3.16265 3.83533 4.21065 4.29462 4.50486 4.77085 5.10108 5.28418 5.42926 5.47080 5.60298 5.62830 5.68917 5.76391 5.80164 5.87424 5.90556 6.01876 6.09696 6.15392 6.16863 6.29014 6.42442 6.46093 6.61769 6.69059 6.80711 6.91347 7.08285 7.17177 7.42232 7.59328 7.71006 7.88188 8.00300 8.36437 8.39744 8.68235 8.76182 9.16563 10.03767 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.009367 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.122013 B = 2988.480394 C = 5390.083468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.020 3.980 3 N -0.485 5.485 4 C 0.003 3.997 5 C 0.075 3.925 6 O -0.297 6.297 7 C -0.067 4.067 8 C 0.128 3.872 9 C -0.433 4.433 10 H 0.086 0.914 11 C 0.076 3.924 12 N -0.782 5.782 13 Si 0.908 3.092 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.263 1.263 17 C -0.180 4.180 18 C -0.076 4.076 19 C -0.320 4.320 20 C 0.136 3.864 21 O -0.321 6.321 22 C 0.035 3.965 23 C -0.003 4.003 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.284 0.716 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.629 -4.329 -4.657 6.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 N -0.210 5.210 4 C -0.125 4.125 5 C 0.017 3.983 6 O -0.212 6.212 7 C -0.112 4.112 8 C 0.125 3.875 9 C -0.462 4.462 10 H 0.104 0.896 11 C -0.144 4.144 12 N -0.406 5.406 13 Si 0.732 3.268 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.187 1.187 17 C -0.199 4.199 18 C -0.095 4.095 19 C -0.340 4.340 20 C 0.091 3.909 21 O -0.235 6.235 22 C -0.061 4.061 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.214 -4.222 -5.259 6.852 hybrid contribution -0.299 -0.198 1.015 1.077 sum 0.915 -4.420 -4.244 6.196 Atomic orbital electron populations 1.21719 0.95017 1.01135 1.02599 1.22527 0.96380 0.91294 1.00670 1.68516 1.06753 1.14243 1.31488 1.24216 0.90590 0.98993 0.98737 1.24037 0.90307 0.97451 0.86516 1.86097 1.72177 1.26694 1.36273 1.17870 0.96280 0.92898 1.04174 1.17607 0.91006 0.90921 0.87979 1.19483 0.95583 0.95736 1.35368 0.89620 1.25986 0.99760 0.94762 0.93843 1.69847 1.29160 1.08167 1.33424 0.86359 0.79605 0.80139 0.80738 1.18613 1.20217 1.18746 1.20940 0.97175 0.97948 1.03855 1.20223 0.94521 0.97883 0.96833 1.20290 1.04005 0.98926 1.10820 1.19183 0.89795 0.92264 0.89618 1.86069 1.31288 1.47260 1.58898 1.22789 0.86878 0.96268 1.00181 1.24498 0.99719 0.98811 0.90134 0.92481 0.92119 0.92696 0.91203 0.94296 0.89598 0.90934 0.89972 0.90547 0.86069 0.89065 0.88475 0.93655 0.93616 0.89839 0.90672 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.98 37.15 0.37 -1.53 16 2 C 0.02 0.29 5.54 -3.83 -0.02 0.26 16 3 N -0.49 -8.22 6.26 -238.27 -1.49 -9.71 16 4 C 0.00 0.06 7.81 -2.76 -0.02 0.04 16 5 C 0.07 1.54 4.54 -25.79 -0.12 1.43 16 6 O -0.30 -7.10 9.16 -33.46 -0.31 -7.40 16 7 C -0.07 -1.69 5.67 -38.22 -0.22 -1.90 16 8 C 0.13 3.36 5.58 -106.70 -0.60 2.76 16 9 C -0.43 -11.02 8.61 -37.83 -0.33 -11.34 16 10 H 0.09 2.17 7.63 -52.49 -0.40 1.76 16 11 C 0.08 1.82 5.14 -17.33 -0.09 1.73 16 12 N -0.78 -19.19 10.97 55.55 0.61 -18.58 16 13 Si 0.91 18.04 29.59 -169.99 -5.03 13.01 16 14 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 15 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 17 C -0.18 -4.55 8.64 -39.25 -0.34 -4.89 16 18 C -0.08 -1.75 9.96 -40.01 -0.40 -2.15 16 19 C -0.32 -7.20 9.05 -39.21 -0.35 -7.55 16 20 C 0.14 3.22 6.69 -39.17 -0.26 2.96 16 21 O -0.32 -6.84 10.28 -34.33 -0.35 -7.20 16 22 C 0.03 0.55 9.81 101.05 0.99 1.54 16 23 C 0.00 -0.06 6.86 -2.62 -0.02 -0.08 16 24 H 0.06 0.80 7.55 -51.93 -0.39 0.41 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.56 7.70 -51.93 -0.40 0.16 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.22 7.79 -51.93 -0.40 0.81 16 31 H 0.08 1.81 7.97 -51.93 -0.41 1.40 16 32 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 33 H 0.12 3.12 6.17 -52.49 -0.32 2.79 16 34 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.10 1.91 6.27 -52.49 -0.33 1.58 16 36 H 0.04 0.68 7.66 -51.92 -0.40 0.28 16 37 H 0.05 0.68 7.65 -51.93 -0.40 0.28 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.47 7.77 -51.93 -0.40 1.06 16 40 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -27.33 330.83 -8.94 -36.27 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.96 Total: 7.37 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -1.40 Total: -18.73 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: -0.88 Total: -28.30 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.66 Total: -14.60 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.33 -8.94 -36.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.673 kcal (2) G-P(sol) polarization free energy of solvation -27.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds