Wall clock time and date at job start Thu Apr 9 2020 13:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 N 1.46900 * 109.47027 * 2 1 4 4 C 1.47960 * 111.00129 * 170.00020 * 3 2 1 5 5 C 1.53935 * 86.18604 * 222.41916 * 4 3 2 6 6 O 1.42902 * 113.73679 * 138.07570 * 5 4 3 7 7 C 1.35738 * 116.99668 * 151.90705 * 6 5 4 8 8 C 1.41192 * 120.28916 * 90.00270 * 7 6 5 9 9 C 1.41178 * 120.26255 * 359.74127 * 8 7 6 10 10 H 1.07998 * 119.99933 * 25.01969 * 9 8 7 11 11 C 1.39927 * 119.99884 * 205.01573 * 9 8 7 12 12 N 1.30874 * 119.99812 * 17.45559 * 11 9 8 13 13 Si 1.86794 * 119.99944 * 197.45470 * 11 9 8 14 14 H 1.48505 * 109.47299 * 59.99887 * 13 11 9 15 15 H 1.48498 * 109.47357 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47416 * 300.00151 * 13 11 9 17 17 C 1.40779 * 119.47193 * 179.72080 * 8 7 6 18 18 C 1.36488 * 120.02173 * 359.97438 * 17 8 7 19 19 C 1.38777 * 120.58274 * 359.97438 * 18 17 8 20 20 C 1.38711 * 120.53341 * 0.04368 * 19 18 17 21 21 O 1.36016 * 120.01753 * 179.97438 * 20 19 18 22 22 C 1.42902 * 116.99996 * 359.94403 * 21 20 19 23 23 C 1.48197 * 111.06952 * 70.57068 * 3 2 1 24 24 H 1.09005 * 109.47449 * 299.99603 * 1 2 3 25 25 H 1.09005 * 109.47789 * 59.99640 * 1 2 3 26 26 H 1.09000 * 109.47274 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47449 * 240.00397 * 2 1 3 28 28 H 1.08997 * 109.47273 * 120.00026 * 2 1 3 29 29 H 1.08998 * 113.75865 * 108.10174 * 4 3 2 30 30 H 1.09006 * 113.76170 * 336.73490 * 4 3 2 31 31 H 1.09000 * 113.73708 * 269.26253 * 5 4 3 32 32 H 0.96998 * 119.99655 * 180.02562 * 12 11 9 33 33 H 1.08001 * 119.98372 * 179.97438 * 17 8 7 34 34 H 1.07995 * 119.70868 * 180.02562 * 18 17 8 35 35 H 1.07993 * 119.73379 * 180.02562 * 19 18 17 36 36 H 1.09009 * 109.46587 * 299.99468 * 22 21 20 37 37 H 1.08995 * 109.47412 * 59.99247 * 22 21 20 38 38 H 1.08997 * 109.46751 * 179.97438 * 22 21 20 39 39 H 1.08999 * 113.75880 * 23.23695 * 23 3 2 40 40 H 1.08997 * 113.82064 * 251.80766 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 3.4788 1.4315 0.2399 5 6 3.1837 2.6197 1.1730 6 8 3.9302 2.5935 2.3913 7 6 4.1998 3.7891 2.9745 8 6 3.3030 4.3411 3.9151 9 6 2.1155 3.6563 4.2527 10 1 2.0594 2.5839 4.1381 11 6 1.0113 4.3670 4.7359 12 7 0.9391 5.6620 4.5608 13 14 -0.3596 3.4675 5.6307 14 1 0.1918 2.7984 6.8363 15 1 -1.4052 4.4396 6.0394 16 1 -0.9551 2.4494 4.7284 17 6 3.6027 5.5794 4.5139 18 6 4.7526 6.2367 4.1845 19 6 5.6357 5.6952 3.2611 20 6 5.3638 4.4768 2.6565 21 8 6.2364 3.9560 1.7524 22 6 7.4123 4.7182 1.4722 23 6 1.7634 2.0406 1.3041 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8899 29 1 4.0605 1.6997 -0.6421 30 1 3.8673 0.5536 0.7562 31 1 3.2182 3.5883 0.6744 32 1 0.1738 6.1547 4.8961 33 1 2.9224 6.0094 5.2341 34 1 4.9777 7.1862 4.6473 35 1 6.5418 6.2269 3.0109 36 1 7.1275 5.6931 1.0764 37 1 7.9857 4.8519 2.3894 38 1 8.0205 4.1908 0.7374 39 1 1.6490 1.3412 2.1323 40 1 0.9770 2.7946 1.2709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:01 Heat of formation + Delta-G solvation = -38.252863 kcal Electronic energy + Delta-G solvation = -22185.176858 eV Core-core repulsion = 18965.899748 eV Total energy + Delta-G solvation = -3219.277110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.23389 -40.37821 -38.42993 -37.15794 -35.31864 -33.23111 -31.31002 -30.23684 -28.01436 -27.77073 -26.94977 -26.66459 -23.16762 -22.63663 -22.20990 -20.86522 -19.65528 -18.55160 -17.62086 -17.26791 -17.09895 -16.58645 -16.36896 -16.19818 -15.76016 -15.23891 -14.86300 -14.67481 -14.49882 -14.15396 -13.73194 -13.57774 -13.46507 -13.16439 -12.91788 -12.81365 -12.55333 -12.42285 -12.39625 -12.16041 -12.06841 -11.83621 -11.64007 -11.60030 -11.26439 -11.00544 -10.30601 -9.92264 -9.33659 -8.77303 -8.60534 -6.36815 0.81234 1.05175 1.36978 1.46907 1.52345 2.17317 2.62382 2.71272 2.90332 3.11774 3.68298 3.73739 4.02328 4.11783 4.19188 4.27312 4.33878 4.47342 4.48630 4.52961 4.58273 4.65937 4.70469 4.78044 4.85627 4.90607 4.92820 5.01720 5.06108 5.08407 5.18882 5.26553 5.34811 5.41166 5.75198 5.91052 6.03291 6.06000 6.12129 6.49370 6.66175 6.81016 6.89996 7.34783 8.25871 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.009367 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.122013 B = 2988.480394 C = 5390.083468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.016 3.984 3 N -0.484 5.484 4 C 0.019 3.981 5 C 0.062 3.938 6 O -0.312 6.312 7 C -0.089 4.089 8 C 0.100 3.900 9 C -0.457 4.457 10 H 0.075 0.925 11 C 0.042 3.958 12 N -0.809 5.809 13 Si 0.972 3.028 14 H -0.261 1.261 15 H -0.264 1.264 16 H -0.259 1.259 17 C -0.205 4.205 18 C -0.077 4.077 19 C -0.318 4.318 20 C 0.129 3.871 21 O -0.337 6.337 22 C 0.025 3.975 23 C 0.006 3.994 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.038 0.962 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.291 0.709 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -5.090 -5.505 7.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 N -0.209 5.209 4 C -0.109 4.109 5 C 0.004 3.996 6 O -0.227 6.227 7 C -0.134 4.134 8 C 0.096 3.904 9 C -0.485 4.485 10 H 0.093 0.907 11 C -0.175 4.175 12 N -0.433 5.433 13 Si 0.793 3.207 14 H -0.185 1.185 15 H -0.188 1.188 16 H -0.183 1.183 17 C -0.225 4.225 18 C -0.095 4.095 19 C -0.338 4.338 20 C 0.084 3.916 21 O -0.251 6.251 22 C -0.070 4.070 23 C -0.123 4.123 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.056 0.944 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.654 -4.976 -6.125 8.063 hybrid contribution -0.292 0.056 1.167 1.205 sum 1.363 -4.920 -4.957 7.116 Atomic orbital electron populations 1.21707 0.93998 1.02603 1.01815 1.22665 0.97297 0.89521 1.01705 1.68517 1.06526 1.16231 1.29584 1.24167 0.91101 0.97372 0.98308 1.24204 0.91377 0.97949 0.86034 1.86018 1.72810 1.26457 1.37446 1.18141 0.97213 0.93437 1.04641 1.17967 0.91886 0.91758 0.88742 1.19536 0.96459 0.95329 1.37224 0.90662 1.26709 1.01540 0.95396 0.93887 1.69881 1.30210 1.09365 1.33889 0.85385 0.76858 0.79126 0.79327 1.18507 1.18818 1.18329 1.20939 0.98315 0.98485 1.04754 1.20546 0.93688 0.98666 0.96614 1.20636 1.04765 0.98576 1.09795 1.19299 0.89875 0.92440 0.89978 1.86036 1.32541 1.48501 1.58028 1.23172 0.85265 0.96875 1.01684 1.24288 0.98300 0.98462 0.91246 0.94148 0.91997 0.90129 0.88929 0.94356 0.87861 0.90220 0.92123 0.89771 0.87272 0.86301 0.85314 0.92796 0.92616 0.86398 0.91354 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.98 71.98 0.72 -2.74 16 2 C 0.02 0.43 5.54 86.30 0.48 0.91 16 3 N -0.48 -15.99 6.26 -910.93 -5.70 -21.69 16 4 C 0.02 0.63 7.81 86.41 0.67 1.31 16 5 C 0.06 2.62 4.54 31.24 0.14 2.76 16 6 O -0.31 -15.34 9.16 -76.72 -0.70 -16.04 16 7 C -0.09 -4.63 5.67 23.15 0.13 -4.50 16 8 C 0.10 5.43 5.58 -21.21 -0.12 5.31 16 9 C -0.46 -24.25 8.61 23.40 0.20 -24.05 16 10 H 0.08 4.00 7.63 -2.91 -0.02 3.98 16 11 C 0.04 2.05 5.14 85.24 0.44 2.49 16 12 N -0.81 -40.77 10.97 21.83 0.24 -40.53 16 13 Si 0.97 37.44 29.59 68.60 2.03 39.47 16 14 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 15 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 16 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 17 C -0.21 -10.71 8.64 22.48 0.19 -10.51 16 18 C -0.08 -3.52 9.96 21.99 0.22 -3.31 16 19 C -0.32 -13.95 9.05 22.51 0.20 -13.75 16 20 C 0.13 6.13 6.69 22.54 0.15 6.28 16 21 O -0.34 -14.00 10.28 -79.83 -0.82 -14.82 16 22 C 0.02 0.71 9.81 113.37 1.11 1.82 16 23 C 0.01 0.23 6.86 86.37 0.59 0.82 16 24 H 0.04 1.10 7.55 -2.38 -0.02 1.08 16 25 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 27 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.04 1.04 7.70 -2.39 -0.02 1.02 16 29 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.08 2.57 7.79 -2.38 -0.02 2.55 16 31 H 0.06 2.79 7.97 -2.39 -0.02 2.77 16 32 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 33 H 0.11 5.83 6.17 -2.91 -0.02 5.82 16 34 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.13 4.72 6.27 -2.91 -0.02 4.70 16 36 H 0.05 1.47 7.66 -2.38 -0.02 1.45 16 37 H 0.06 1.50 7.65 -2.39 -0.02 1.48 16 38 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.07 2.75 7.77 -2.39 -0.02 2.74 16 40 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -60.66 330.83 1.20 -59.46 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 1.02 Total: 31.31 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 5.14 Total: -37.15 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -5.46 Total: -62.22 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.52 Total: -30.86 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -60.66 1.20 -59.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.204 kcal (2) G-P(sol) polarization free energy of solvation -60.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds