Wall clock time and date at job start Thu Apr 9 2020 13:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47242 * 2 1 4 4 C 1.53000 * 109.46992 * 120.00451 * 2 1 3 5 5 N 1.46911 * 109.46982 * 184.99967 * 4 2 1 6 6 C 1.46892 * 110.99796 * 66.04148 * 5 4 2 7 7 C 1.46896 * 110.99886 * 189.99630 * 5 4 2 8 8 O 1.42907 * 109.46811 * 239.99859 * 2 1 3 9 9 C 1.35638 * 116.99522 * 84.96076 * 8 2 1 10 10 C 1.38660 * 120.16253 * 354.51668 * 9 8 2 11 11 C 1.38096 * 120.09038 * 179.75088 * 10 9 8 12 12 C 1.38684 * 120.41648 * 0.54957 * 11 10 9 13 13 C 1.37702 * 120.31955 * 359.70391 * 12 11 10 14 14 C 1.39839 * 119.90284 * 0.02562 * 13 12 11 15 15 C 1.47534 * 120.20518 * 180.02562 * 14 13 12 16 16 O 1.21815 * 119.99816 * 179.97438 * 15 14 13 17 17 C 1.41826 * 120.00114 * 359.97405 * 15 14 13 18 18 H 1.07995 * 120.00056 * 0.02562 * 17 15 14 19 19 C 1.40328 * 119.99985 * 180.02562 * 17 15 14 20 20 N 1.30540 * 120.00110 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99943 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47236 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47750 * 119.99783 * 21 19 17 24 24 H 1.48505 * 109.47234 * 239.99949 * 21 19 17 25 25 H 1.09003 * 109.47000 * 299.99833 * 1 2 3 26 26 H 1.09005 * 109.47332 * 59.99770 * 1 2 3 27 27 H 1.09004 * 109.47163 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47277 * 304.99307 * 4 2 1 29 29 H 1.08992 * 109.47591 * 65.00025 * 4 2 1 30 30 H 1.09001 * 109.47433 * 60.00075 * 6 5 4 31 31 H 1.09005 * 109.46750 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47854 * 300.00030 * 6 5 4 33 33 H 1.09005 * 109.46892 * 59.99916 * 7 5 4 34 34 H 1.08995 * 109.47194 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47731 * 300.00038 * 7 5 4 36 36 H 1.07997 * 119.95684 * 0.02562 * 10 9 8 37 37 H 1.07997 * 119.79036 * 180.25735 * 11 10 9 38 38 H 1.07997 * 119.84133 * 179.72550 * 12 11 10 39 39 H 1.08007 * 120.04831 * 179.97438 * 13 12 11 40 40 H 0.96997 * 119.99952 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5041 -0.6177 1.3111 6 6 3.9250 0.7747 1.5151 7 6 4.0499 -1.4915 2.3581 8 8 2.0063 -0.6737 -1.1668 9 6 2.1114 0.0610 -2.3022 10 6 1.6585 1.3713 -2.3286 11 6 1.7709 2.1195 -3.4838 12 6 2.3256 1.5657 -4.6279 13 6 2.7761 0.2645 -4.6222 14 6 2.6739 -0.5036 -3.4581 15 6 3.1549 -1.8982 -3.4445 16 8 3.0645 -2.5638 -2.4282 17 6 3.7226 -2.4641 -4.6145 18 1 3.8031 -1.8740 -5.5154 19 6 4.1796 -3.7908 -4.6017 20 7 4.0827 -4.5040 -3.5126 21 14 4.9279 -4.5358 -6.1425 22 1 4.9229 -3.5274 -7.2327 23 1 6.3245 -4.9550 -5.8618 24 1 4.1305 -5.7176 -6.5585 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6054 -0.2619 2.1370 29 1 1.7516 -1.7715 1.2055 30 1 3.5085 1.1469 2.4511 31 1 5.0132 0.8229 1.5567 32 1 3.5659 1.3879 0.6885 33 1 3.7814 -2.5261 2.1443 34 1 5.1354 -1.3957 2.3820 35 1 3.6379 -1.2016 3.3247 36 1 1.2213 1.8087 -1.4432 37 1 1.4204 3.1409 -3.4977 38 1 2.4049 2.1579 -5.5275 39 1 3.2069 -0.1626 -5.5158 40 1 4.3989 -5.4209 -3.5036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233525804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:12 Heat of formation + Delta-G solvation = -41.111650 kcal Electronic energy + Delta-G solvation = -22078.089641 eV Core-core repulsion = 18858.688565 eV Total energy + Delta-G solvation = -3219.401077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.67501 -37.72908 -36.29982 -35.82215 -32.54279 -31.92475 -30.40077 -28.91237 -27.45961 -26.79966 -26.54526 -22.98708 -22.68651 -21.70472 -20.02861 -19.58037 -17.52158 -16.41845 -15.63544 -15.53736 -15.22186 -14.91096 -14.40104 -14.32563 -14.15043 -13.75088 -13.20287 -13.03949 -12.62679 -12.41065 -12.28803 -12.23596 -11.99268 -11.68334 -11.56324 -11.48898 -11.30866 -11.26824 -11.10370 -10.80879 -10.64166 -10.28449 -10.25373 -10.01506 -9.94685 -8.84612 -8.09143 -8.05885 -7.27981 -7.20657 -6.10944 -4.70978 1.91944 2.19876 3.12245 3.20949 3.25262 3.87221 4.10051 4.12080 4.20793 4.78079 4.96731 5.20519 5.23614 5.34922 5.40063 5.43694 5.48665 5.53208 5.65065 5.69178 5.71799 5.81620 5.88328 6.01063 6.01691 6.02255 6.10997 6.12971 6.27250 6.35049 6.46192 6.81592 7.05343 7.05724 7.22531 7.24325 7.28790 7.40922 7.61378 8.19465 8.32315 8.96536 9.03353 10.50416 10.75698 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.006436 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.683106 B = 4349.297781 C = 5603.322583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.077 3.923 3 H 0.066 0.934 4 C 0.065 3.935 5 N -0.533 5.533 6 C 0.023 3.977 7 C 0.030 3.970 8 O -0.246 6.246 9 C 0.158 3.842 10 C -0.235 4.235 11 C -0.093 4.093 12 C -0.180 4.180 13 C -0.059 4.059 14 C -0.137 4.137 15 C 0.392 3.608 16 O -0.510 6.510 17 C -0.524 4.524 18 H 0.071 0.929 19 C 0.082 3.918 20 N -0.738 5.738 21 Si 0.901 3.099 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.017 0.983 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 10.069 6.772 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.019 3.981 3 H 0.084 0.916 4 C -0.063 4.063 5 N -0.256 5.256 6 C -0.125 4.125 7 C -0.118 4.118 8 O -0.157 6.157 9 C 0.110 3.890 10 C -0.253 4.253 11 C -0.112 4.112 12 C -0.198 4.198 13 C -0.077 4.077 14 C -0.139 4.139 15 C 0.285 3.715 16 O -0.396 6.396 17 C -0.556 4.556 18 H 0.089 0.911 19 C -0.141 4.141 20 N -0.368 5.368 21 Si 0.726 3.274 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.151 0.849 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.336 9.228 7.002 12.055 hybrid contribution -0.058 0.393 -0.089 0.407 sum -3.394 9.622 6.914 12.325 Atomic orbital electron populations 1.22353 0.95579 1.03484 1.02229 1.22399 0.93249 0.96393 0.86010 0.91615 1.22161 0.87497 1.02341 0.94308 1.61767 1.09632 1.07306 1.46897 1.22439 1.01248 0.89605 0.99234 1.22340 1.00208 0.98045 0.91187 1.86584 1.79172 1.35135 1.14775 1.19427 0.93101 0.89318 0.87112 1.21090 1.09637 0.94942 0.99674 1.20779 0.99032 0.98534 0.92839 1.20907 1.04496 0.96326 0.98092 1.21398 0.96017 0.92700 0.97633 1.21558 1.00908 1.00840 0.90617 1.17974 0.80863 0.83108 0.89578 1.90564 1.53836 1.60998 1.34213 1.20921 1.38112 0.97343 0.99181 0.91130 1.25934 0.94337 0.97225 0.96568 1.69989 1.32069 1.07916 1.26797 0.86410 0.79109 0.79483 0.82426 1.18504 1.20014 1.20035 0.91835 0.91635 0.91197 0.93771 0.89309 0.96241 0.91381 0.91544 0.90908 0.91470 0.96406 0.86525 0.87177 0.86976 0.84933 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.17 37.16 0.34 -2.13 16 2 C 0.08 1.28 2.18 -26.73 -0.06 1.22 16 3 H 0.07 1.01 4.51 -51.93 -0.23 0.78 16 4 C 0.06 1.01 4.62 -3.82 -0.02 0.99 16 5 N -0.53 -8.86 4.97 -251.26 -1.25 -10.11 16 6 C 0.02 0.32 9.33 60.06 0.56 0.88 16 7 C 0.03 0.43 9.57 60.06 0.57 1.00 16 8 O -0.25 -5.59 7.83 -40.45 -0.32 -5.90 16 9 C 0.16 3.54 6.62 -38.61 -0.26 3.28 16 10 C -0.23 -4.25 8.24 -39.48 -0.33 -4.58 16 11 C -0.09 -1.55 10.04 -39.47 -0.40 -1.95 16 12 C -0.18 -3.16 10.02 -39.61 -0.40 -3.56 16 13 C -0.06 -1.25 9.43 -39.18 -0.37 -1.62 16 14 C -0.14 -3.42 5.90 -104.69 -0.62 -4.03 16 15 C 0.39 11.57 6.91 -34.42 -0.24 11.34 16 16 O -0.51 -16.71 13.71 -16.75 -0.23 -16.94 16 17 C -0.52 -14.89 8.86 -37.43 -0.33 -15.22 16 18 H 0.07 1.83 6.02 -52.49 -0.32 1.51 16 19 C 0.08 2.26 5.50 -17.31 -0.10 2.17 16 20 N -0.74 -21.88 11.73 55.57 0.65 -21.22 16 21 Si 0.90 19.88 29.56 -169.99 -5.03 14.86 16 22 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.92 6.91 -51.93 -0.36 0.56 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.09 1.49 8.06 -51.93 -0.42 1.07 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 32 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 33 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 34 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 35 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.12 1.79 5.43 -52.49 -0.28 1.50 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.13 2.68 6.21 -52.48 -0.33 2.36 16 40 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -34.72 328.47 -8.47 -43.19 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.63 Total: 3.40 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.63 Total: -12.21 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: -0.60 Total: -31.33 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.55 Total: -22.85 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.72 -8.47 -43.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.076 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds