Wall clock time and date at job start Thu Apr 9 2020 13:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47168 * 2 1 4 4 C 1.46498 * 119.99898 * 270.00217 * 3 2 1 5 5 C 1.52999 * 109.46831 * 269.99840 * 4 3 2 6 6 C 1.34774 * 119.99638 * 89.99585 * 3 2 1 7 7 O 1.21286 * 119.99489 * 179.97438 * 6 3 2 8 8 C 1.50695 * 120.00211 * 0.02562 * 6 3 2 9 9 C 1.50708 * 109.47041 * 179.97438 * 8 6 3 10 10 C 1.38128 * 120.03216 * 264.99738 * 9 8 6 11 11 C 1.38272 * 120.06572 * 179.97438 * 10 9 8 12 12 C 1.38323 * 120.14143 * 359.95990 * 11 10 9 13 13 C 1.38076 * 120.06727 * 0.02562 * 12 11 10 14 14 C 1.38855 * 120.03760 * 84.95359 * 9 8 6 15 15 O 1.35751 * 120.06572 * 0.04474 * 14 9 8 16 16 C 1.34834 * 116.99793 * 174.38256 * 15 14 9 17 17 H 1.07996 * 119.99771 * 5.05403 * 16 15 14 18 18 C 1.38655 * 119.99684 * 185.06032 * 16 15 14 19 19 N 1.31553 * 119.99590 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00134 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46815 * 90.00762 * 20 18 16 22 22 H 1.48504 * 109.47212 * 210.00151 * 20 18 16 23 23 H 1.48492 * 109.47289 * 330.00491 * 20 18 16 24 24 H 1.09001 * 109.47215 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47127 * 300.00396 * 1 2 3 26 26 H 1.09001 * 109.47168 * 60.00148 * 1 2 3 27 27 H 1.08994 * 109.46635 * 239.99904 * 2 1 3 28 28 H 1.08995 * 109.46789 * 119.99960 * 2 1 3 29 29 H 1.08996 * 109.47524 * 29.99592 * 4 3 2 30 30 H 1.09000 * 109.47193 * 150.00441 * 4 3 2 31 31 H 1.08999 * 109.47295 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47112 * 300.00274 * 5 4 3 33 33 H 1.08995 * 109.47445 * 60.00270 * 5 4 3 34 34 H 1.09002 * 109.47379 * 59.99962 * 8 6 3 35 35 H 1.08993 * 109.47066 * 299.99180 * 8 6 3 36 36 H 1.07999 * 119.96352 * 359.97438 * 10 9 8 37 37 H 1.07999 * 119.92945 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.96357 * 180.02562 * 12 11 10 39 39 H 1.08005 * 120.03398 * 179.72842 * 13 12 11 40 40 H 0.97008 * 120.00232 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2429 2.0165 1.1672 7 8 2.6476 3.1598 1.1672 8 6 1.9922 1.3059 2.4723 9 6 2.3190 2.2291 3.6178 10 6 3.5657 2.1807 4.2105 11 6 3.8665 3.0278 5.2612 12 6 2.9211 3.9265 5.7215 13 6 1.6732 3.9798 5.1329 14 6 1.3676 3.1298 4.0778 15 8 0.1415 3.1797 3.4973 16 6 -0.7721 3.9924 4.0654 17 1 -0.4900 4.6275 4.8920 18 6 -2.0739 4.0125 3.5884 19 7 -2.9654 4.8051 4.1430 20 14 -2.5616 2.9143 2.1582 21 1 -3.0360 1.6065 2.6778 22 1 -3.6501 3.5636 1.3843 23 1 -1.3868 2.6996 1.2758 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.8891 2.3448 -2.6546 32 1 4.3883 2.2155 -0.9507 33 1 3.8745 0.7622 -1.8407 34 1 2.6227 0.4187 2.5299 35 1 0.9444 1.0115 2.5302 36 1 4.3062 1.4806 3.8530 37 1 4.8418 2.9878 5.7234 38 1 3.1592 4.5870 6.5421 39 1 0.9339 4.6787 5.4956 40 1 -3.8761 4.8195 3.8091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250011449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:23 Heat of formation + Delta-G solvation = -41.214658 kcal Electronic energy + Delta-G solvation = -22239.340252 eV Core-core repulsion = 19019.934709 eV Total energy + Delta-G solvation = -3219.405543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.93924 -38.87491 -36.51496 -35.84601 -32.85313 -32.31726 -31.54706 -29.44141 -29.10644 -26.98566 -25.18552 -23.55994 -23.04955 -21.45446 -20.78794 -18.67203 -17.79760 -17.11388 -16.85787 -16.17267 -15.34736 -14.88858 -14.48303 -14.07690 -14.01121 -13.78156 -13.67803 -13.62707 -13.22046 -12.74945 -12.66235 -12.38085 -12.30827 -12.21536 -11.96529 -11.71869 -11.55211 -11.29161 -11.07662 -10.96597 -10.79021 -10.69513 -10.55800 -10.14666 -9.40073 -9.33783 -8.84721 -8.50941 -8.06582 -7.27967 -6.38593 -4.04071 2.10555 2.37231 3.08225 3.19493 3.21972 3.23960 3.37249 4.23735 4.51009 4.83045 4.89940 4.94649 5.11829 5.12170 5.25339 5.32277 5.36608 5.39188 5.42711 5.51155 5.66071 5.73185 5.79020 5.84252 5.86645 5.89851 6.01676 6.13948 6.19092 6.29857 6.37682 6.62592 6.75043 6.84473 7.18509 7.23114 7.37621 7.61946 7.68391 7.84668 8.08611 8.60799 8.97092 9.60265 10.69487 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012224 B = 0.008669 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.956179 B = 3229.047220 C = 4889.367646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.109 3.891 3 N -0.623 5.623 4 C 0.111 3.889 5 C -0.164 4.164 6 C 0.520 3.480 7 O -0.521 6.521 8 C -0.082 4.082 9 C -0.144 4.144 10 C -0.067 4.067 11 C -0.205 4.205 12 C -0.075 4.075 13 C -0.220 4.220 14 C 0.176 3.824 15 O -0.214 6.214 16 C -0.385 4.385 17 H 0.106 0.894 18 C 0.064 3.936 19 N -0.881 5.881 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.257 1.257 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.575 -11.075 -7.965 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.015 4.015 3 N -0.359 5.359 4 C -0.012 4.012 5 C -0.222 4.222 6 C 0.309 3.691 7 O -0.395 6.395 8 C -0.121 4.121 9 C -0.146 4.146 10 C -0.086 4.086 11 C -0.224 4.224 12 C -0.094 4.094 13 C -0.239 4.239 14 C 0.123 3.877 15 O -0.119 6.119 16 C -0.461 4.461 17 H 0.123 0.877 18 C -0.139 4.139 19 N -0.520 5.520 20 Si 0.724 3.276 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.181 1.181 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.150 0.850 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.456 -10.472 -8.168 16.303 hybrid contribution -0.498 -0.277 -0.527 0.776 sum 8.958 -10.749 -8.695 16.474 Atomic orbital electron populations 1.22312 0.96000 1.02163 1.03308 1.21506 0.94474 0.82631 1.02870 1.48072 1.67487 1.14342 1.05987 1.21325 0.96000 0.98960 0.84874 1.22112 0.97413 1.01342 1.01373 1.20809 0.76532 0.86761 0.85027 1.90690 1.44278 1.17501 1.87078 1.20388 1.03852 0.97606 0.90268 1.18350 0.94511 1.01125 1.00632 1.20462 0.94143 0.98324 0.95628 1.20585 0.99482 1.01057 1.01253 1.20796 0.93115 0.97179 0.98261 1.21250 0.98375 1.03863 1.00396 1.18815 0.85696 0.92372 0.90771 1.83539 1.18056 1.60209 1.50135 1.20762 0.88873 1.19130 1.17304 0.87675 1.24421 0.94182 0.97075 0.98231 1.69644 1.03901 1.37263 1.41144 0.86299 0.78755 0.80339 0.82241 1.19855 1.20878 1.18083 0.91525 0.91653 0.92417 0.90668 0.90215 0.91116 0.89960 0.91968 0.92202 0.92918 0.89175 0.88255 0.87216 0.87500 0.87288 0.84980 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.19 5.93 -4.04 -0.02 1.16 16 3 N -0.62 -9.18 2.47 -173.70 -0.43 -9.61 16 4 C 0.11 1.46 6.13 -4.04 -0.02 1.44 16 5 C -0.16 -1.81 10.24 37.16 0.38 -1.43 16 6 C 0.52 9.73 7.67 -10.99 -0.08 9.65 16 7 O -0.52 -11.95 15.61 5.55 0.09 -11.87 16 8 C -0.08 -1.42 4.11 -29.03 -0.12 -1.54 16 9 C -0.14 -2.97 4.39 -104.43 -0.46 -3.43 16 10 C -0.07 -1.22 9.68 -39.61 -0.38 -1.60 16 11 C -0.20 -3.65 10.04 -39.54 -0.40 -4.05 16 12 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 13 C -0.22 -5.01 9.17 -39.40 -0.36 -5.37 16 14 C 0.18 4.22 6.62 -39.11 -0.26 3.97 16 15 O -0.21 -5.73 7.73 0.03 0.00 -5.73 16 16 C -0.38 -11.05 9.95 30.89 0.31 -10.74 16 17 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 18 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 19 N -0.88 -25.84 13.96 55.48 0.77 -25.07 16 20 Si 0.90 21.70 28.62 -169.99 -4.86 16.84 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.99 7.22 -51.93 -0.38 0.61 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 28 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 29 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.08 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 1.20 7.31 -51.93 -0.38 0.82 16 35 H 0.10 1.78 6.74 -51.93 -0.35 1.43 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 3.13 5.64 -52.48 -0.30 2.84 16 40 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -33.14 334.95 -6.68 -39.82 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.76 Total: 4.41 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.54 Total: -13.85 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.35 Total: -34.67 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.09 Total: -17.60 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.14 -6.68 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250011449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.391 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds