Wall clock time and date at job start Thu Apr 9 2020 13:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47168 * 2 1 4 4 C 1.46498 * 119.99898 * 270.00217 * 3 2 1 5 5 C 1.52999 * 109.46831 * 269.99840 * 4 3 2 6 6 C 1.34774 * 119.99638 * 89.99585 * 3 2 1 7 7 O 1.21286 * 119.99489 * 179.97438 * 6 3 2 8 8 C 1.50695 * 120.00211 * 0.02562 * 6 3 2 9 9 C 1.50708 * 109.47041 * 179.97438 * 8 6 3 10 10 C 1.38128 * 120.03216 * 264.99738 * 9 8 6 11 11 C 1.38272 * 120.06572 * 179.97438 * 10 9 8 12 12 C 1.38323 * 120.14143 * 359.95990 * 11 10 9 13 13 C 1.38076 * 120.06727 * 0.02562 * 12 11 10 14 14 C 1.38855 * 120.03760 * 84.95359 * 9 8 6 15 15 O 1.35751 * 120.06572 * 0.04474 * 14 9 8 16 16 C 1.34834 * 116.99793 * 174.38256 * 15 14 9 17 17 H 1.07996 * 119.99771 * 5.05403 * 16 15 14 18 18 C 1.38655 * 119.99684 * 185.06032 * 16 15 14 19 19 N 1.31553 * 119.99590 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00134 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46815 * 90.00762 * 20 18 16 22 22 H 1.48504 * 109.47212 * 210.00151 * 20 18 16 23 23 H 1.48492 * 109.47289 * 330.00491 * 20 18 16 24 24 H 1.09001 * 109.47215 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47127 * 300.00396 * 1 2 3 26 26 H 1.09001 * 109.47168 * 60.00148 * 1 2 3 27 27 H 1.08994 * 109.46635 * 239.99904 * 2 1 3 28 28 H 1.08995 * 109.46789 * 119.99960 * 2 1 3 29 29 H 1.08996 * 109.47524 * 29.99592 * 4 3 2 30 30 H 1.09000 * 109.47193 * 150.00441 * 4 3 2 31 31 H 1.08999 * 109.47295 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47112 * 300.00274 * 5 4 3 33 33 H 1.08995 * 109.47445 * 60.00270 * 5 4 3 34 34 H 1.09002 * 109.47379 * 59.99962 * 8 6 3 35 35 H 1.08993 * 109.47066 * 299.99180 * 8 6 3 36 36 H 1.07999 * 119.96352 * 359.97438 * 10 9 8 37 37 H 1.07999 * 119.92945 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.96357 * 180.02562 * 12 11 10 39 39 H 1.08005 * 120.03398 * 179.72842 * 13 12 11 40 40 H 0.97008 * 120.00232 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2429 2.0165 1.1672 7 8 2.6476 3.1598 1.1672 8 6 1.9922 1.3059 2.4723 9 6 2.3190 2.2291 3.6178 10 6 3.5657 2.1807 4.2105 11 6 3.8665 3.0278 5.2612 12 6 2.9211 3.9265 5.7215 13 6 1.6732 3.9798 5.1329 14 6 1.3676 3.1298 4.0778 15 8 0.1415 3.1797 3.4973 16 6 -0.7721 3.9924 4.0654 17 1 -0.4900 4.6275 4.8920 18 6 -2.0739 4.0125 3.5884 19 7 -2.9654 4.8051 4.1430 20 14 -2.5616 2.9143 2.1582 21 1 -3.0360 1.6065 2.6778 22 1 -3.6501 3.5636 1.3843 23 1 -1.3868 2.6996 1.2758 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.8891 2.3448 -2.6546 32 1 4.3883 2.2155 -0.9507 33 1 3.8745 0.7622 -1.8407 34 1 2.6227 0.4187 2.5299 35 1 0.9444 1.0115 2.5302 36 1 4.3062 1.4806 3.8530 37 1 4.8418 2.9878 5.7234 38 1 3.1592 4.5870 6.5421 39 1 0.9339 4.6787 5.4956 40 1 -3.8761 4.8195 3.8091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250011449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:23 Heat of formation + Delta-G solvation = -61.890483 kcal Electronic energy + Delta-G solvation = -22240.236823 eV Core-core repulsion = 19019.934709 eV Total energy + Delta-G solvation = -3220.302114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40560 -40.44664 -38.22960 -37.12445 -34.52604 -34.03726 -32.73046 -30.82407 -30.48136 -28.44356 -27.18191 -24.51583 -24.22690 -23.16329 -22.30523 -19.95711 -19.74984 -18.88911 -18.11203 -17.38306 -16.84891 -16.62987 -15.92854 -15.73705 -15.62879 -15.34577 -14.86157 -14.79723 -14.66409 -14.30453 -14.10702 -13.88474 -13.81800 -13.44400 -13.07920 -12.99650 -12.91793 -12.65530 -12.54085 -12.43931 -12.17542 -12.02005 -11.93153 -11.86743 -11.29294 -10.93284 -10.81756 -9.68210 -9.63186 -9.01656 -8.52079 -6.23036 0.52269 0.73560 1.22787 1.28765 1.44855 1.70283 2.11047 2.23651 2.76741 3.11350 3.11754 3.73240 3.88488 4.01324 4.09469 4.20837 4.23578 4.30164 4.36130 4.47118 4.51379 4.52486 4.59756 4.66136 4.74354 4.79841 4.92306 4.95259 4.99547 5.04167 5.26013 5.28628 5.36347 5.44020 5.61423 5.69819 5.74949 5.78874 5.90653 6.27883 6.43551 6.82585 7.27345 7.58526 8.60011 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012224 B = 0.008669 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.956179 B = 3229.047220 C = 4889.367646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.102 3.898 3 N -0.617 5.617 4 C 0.104 3.896 5 C -0.153 4.153 6 C 0.512 3.488 7 O -0.579 6.579 8 C -0.081 4.081 9 C -0.145 4.145 10 C -0.067 4.067 11 C -0.184 4.184 12 C -0.081 4.081 13 C -0.247 4.247 14 C 0.131 3.869 15 O -0.236 6.236 16 C -0.395 4.395 17 H 0.076 0.924 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.965 3.035 21 H -0.255 1.255 22 H -0.272 1.272 23 H -0.264 1.264 24 H 0.096 0.904 25 H 0.027 0.973 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.134 -14.623 -9.501 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 N -0.351 5.351 4 C -0.018 4.018 5 C -0.211 4.211 6 C 0.302 3.698 7 O -0.458 6.458 8 C -0.121 4.121 9 C -0.147 4.147 10 C -0.085 4.085 11 C -0.202 4.202 12 C -0.099 4.099 13 C -0.267 4.267 14 C 0.082 3.918 15 O -0.144 6.144 16 C -0.472 4.472 17 H 0.094 0.906 18 C -0.188 4.188 19 N -0.566 5.566 20 Si 0.787 3.213 21 H -0.179 1.179 22 H -0.197 1.197 23 H -0.189 1.189 24 H 0.115 0.885 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.157 0.843 35 H 0.109 0.891 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.039 -14.071 -9.709 20.910 hybrid contribution -1.017 0.787 0.029 1.287 sum 11.022 -13.284 -9.680 19.790 Atomic orbital electron populations 1.22326 0.96825 1.03492 1.01201 1.21867 0.93737 0.80634 1.05699 1.48207 1.65856 1.15718 1.05296 1.21494 0.98376 0.97040 0.84927 1.22013 0.94900 1.02996 1.01183 1.21038 0.76117 0.86198 0.86467 1.90663 1.47353 1.19813 1.87987 1.20483 1.04395 0.98476 0.88702 1.18870 0.94500 1.00247 1.01063 1.21055 0.93776 0.98728 0.94940 1.21185 1.00513 0.98617 0.99905 1.21152 0.91860 0.98125 0.98777 1.21316 0.99775 1.04093 1.01478 1.19449 0.85722 0.94425 0.92189 1.83486 1.18942 1.60766 1.51160 1.20694 0.90026 1.19501 1.16982 0.90640 1.25247 0.93951 0.98649 1.00993 1.69737 1.04487 1.39273 1.43136 0.85315 0.78115 0.79150 0.78725 1.17886 1.19721 1.18862 0.88495 0.95411 0.92842 0.86817 0.88392 0.88194 0.93657 0.90279 0.94745 0.90447 0.84254 0.89121 0.82698 0.82959 0.84472 0.87838 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.81 10.24 71.98 0.74 -3.08 16 2 C 0.10 1.83 5.93 86.38 0.51 2.34 16 3 N -0.62 -16.91 2.47 -821.84 -2.03 -18.94 16 4 C 0.10 2.57 6.13 86.38 0.53 3.10 16 5 C -0.15 -2.98 10.24 71.98 0.74 -2.25 16 6 C 0.51 18.78 7.67 87.66 0.67 19.45 16 7 O -0.58 -27.13 15.61 -3.05 -0.05 -27.18 16 8 C -0.08 -2.70 4.11 29.10 0.12 -2.58 16 9 C -0.15 -5.84 4.39 -19.74 -0.09 -5.92 16 10 C -0.07 -2.20 9.68 22.25 0.22 -1.98 16 11 C -0.18 -5.88 10.04 22.30 0.22 -5.65 16 12 C -0.08 -3.05 10.04 22.25 0.22 -2.83 16 13 C -0.25 -11.87 9.17 22.39 0.21 -11.67 16 14 C 0.13 6.57 6.62 22.57 0.15 6.72 16 15 O -0.24 -13.36 7.73 -22.80 -0.18 -13.54 16 16 C -0.40 -24.41 9.95 67.92 0.68 -23.73 16 17 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 18 C 0.01 0.56 5.49 84.83 0.47 1.03 16 19 N -0.93 -57.18 13.96 21.61 0.30 -56.88 16 20 Si 0.96 46.62 28.62 68.60 1.96 48.59 16 21 H -0.25 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 24 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.03 0.79 7.22 -2.39 -0.02 0.78 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.11 1.24 8.07 -2.39 -0.02 1.23 16 28 H 0.10 1.42 6.44 -2.39 -0.02 1.41 16 29 H 0.10 1.87 8.07 -2.39 -0.02 1.85 16 30 H 0.04 1.46 7.42 -2.39 -0.02 1.44 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.14 3.10 7.31 -2.39 -0.02 3.08 16 35 H 0.09 3.20 6.74 -2.39 -0.02 3.19 16 36 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 39 H 0.10 5.44 5.64 -2.91 -0.02 5.43 16 40 H 0.28 16.06 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -80.22 334.95 6.42 -73.81 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.03 Total: 21.18 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 5.38 Total: -27.04 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -1.73 Total: -75.82 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.22 Total: -40.71 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.96 Total: 48.59 kcal Total: -80.22 6.42 -73.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250011449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.915 kcal (2) G-P(sol) polarization free energy of solvation -80.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds